TCONS_00069772 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069772
Unique NameTCONS_00069772
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1053

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069772 ID=TCONS_00069772|Name=TCONS_00069772|organism=Clytia hemisphaerica|type=transcript|length=1053bp
GTGGAGATCGGTGATGAATGCACAAGCAAAAGTGATAAGAAGAATATTTA
TTTCGACATTGATTTCCAAAGATCCTCAACTGTCACCTCAAAAATCAGGA
TCATGAAGTCCAAAAAGTATGATCTTGGATATTTTAAAAACCTTGTGACG
AAAAAGCTACCCGTTTACCTCCAGGCACTTTCACCAACAAAGAATGGAAA
AATCTTTTTTAATGAGCTTCTGGGCAGTAGTGCTACTCTGCTTCATGAAA
ATTTGCCATTTGACCATTCCGTATTCACTTCTATTTCTGTAAGCGACATA
TTAAACGAAGAGCCAGATGGAACATTTACCGTGAAAGGTCAAATCAAGTG
GATTGGTGAAGCACGTTCTATAATGAGAAATGGTTACAACAAATCTGTGC
GTCATGCGAAATTGGTGGATCAAGCTGGAGATGCAATCAACATATCTATT
TGGGGTGGACTTATCGAGAAAGCTGTCACCATGAAAACTTTCAAGTTCAC
AAAAGTAGCTGTCTCGCACTTTAGAGGAGTTAATTTGACGACCACATGGG
ATTCAGATATAACTGAAGACAGTGATGAGGATGGTGTAAGCTATGCATGG
GAGAACATTCCTATTAATGAAAACAAATCTATGTGCTGCCCAACTGTATT
AGCTGCCAAAGTTGAGCAGTATTTCATCTGTATATTCTGCAAGAAGAAAC
TAGAAAGACCTTCCAATAGCAAGATTTCTAAAGTTTCATGTGGGCCGTGC
GAACGTTCTATGCCCTTAAAAAGGTGCAAACTTGCCACCATCTGCGAAAT
AACCTTTGATTATGCACACAACCAAACTACCTTAACAGCCTTTAATGATG
TGGTTGTCAACTTTTTTGGTGAGAATCTAAATGTTGATCAGTTAGAGGAT
TGTATATTACAGATGGACCAACCCTTACGGAAACTAAATGCTcgtattcc
attgaaaacgaatATAGAATGcattaaaatagaataaaattctaggttca
aaactttgatgaatttctaatTCATTGGGTATCAAAATGTATTTAAATTC
TAG
Run BLAST on NCBI

protein sequence of TCONS_00069772-protein

>TCONS_00069772-protein ID=TCONS_00069772-protein|Name=TCONS_00069772-protein|organism=Clytia hemisphaerica|type=polypeptide|length=328bp
VEIGDECTSKSDKKNIYFDIDFQRSSTVTSKIRIMKSKKYDLGYFKNLVT
KKLPVYLQALSPTKNGKIFFNELLGSSATLLHENLPFDHSVFTSISVSDI
LNEEPDGTFTVKGQIKWIGEARSIMRNGYNKSVRHAKLVDQAGDAINISI
WGGLIEKAVTMKTFKFTKVAVSHFRGVNLTTTWDSDITEDSDEDGVSYAW
ENIPINENKSMCCPTVLAAKVEQYFICIFCKKKLERPSNSKISKVSCGPC
ERSMPLKRCKLATICEITFDYAHNQTTLTAFNDVVVNFFGENLNVDQLED
CILQMDQPLRKLNARIPLKTNIECIKIE
Run BLAST on NCBI

transcript from alignment at scaffold_507:242344..243841-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069772 ID=TCONS_00069772|Name=TCONS_00069772|organism=Clytia hemisphaerica|type=transcript|length=1498bp|location=Sequence derived from alignment at scaffold_507:242344..243841- (Clytia hemisphaerica)
GTGGAGATCGGTGATGAATGCACAAGCAAAAGTGATAAGAAGAATATTTA
TTTCGACATTGATTTCCAAAGATCCTCAACTGTCACCTCAAAAATCAGGA
TCATGAAGTCCAAAAAGTATGATCTTGGATATTTTAAAAACCTTGTGACG
AAAAAGCTACCCGTTTACCTCCAGGCACTTTCACCAACAAAGAATGGAAA
AATCTTTTTTAATGAGCTTCTGGGCAGTAGTGCTACTCTGCTTCATGAAA
ATTTGCCATTTGACCATTCCGTATTCACTTCTATTTCTGTAAGCGACATA
TTAAACGAAGAGCCAGATGGAACATTTACCGTGAAAGGTCAAATCAAGTG
GATTGGTGAAGCACGTTCTATAATGAGAAATGGTTACAACAAATCTGTGC
GTCATGCGAAATTGGTGGATCAAGCTGGAGATGCAATCAACATATCTATT
TGGGGTGGACTTATCGAGAAAGCTGTCACCATGAAAACTTTCAAGTTCAC
AAAAGTAGCTGTCTCGCACTTTAGAGGAGTTAATTTGACGACCACATGGG
ATTCAGATATAACTGAAGACAGTGATGAGGATGGTGTAAGCTATGCATGG
GAGAACATTCCTATTAATGAAAACAAATCTATGTGCCCGGGGGGGTACTA
AGGCAAAATGGGTTACGGGGATGATCCGCTGGTCAGGGTACCTTTTTTAA
CCTCCACGAGTCCCTGGTAGGGTCGCAAAAACACGAAAATAGAAAAATCA
GTCCCTCGTCGGGTGCCTATTTTTGGAAAATTTGGGGAAAAAGTAGAAAA
TTTGAGAAAATTTTGGAATTTCAGTCCCATTCAGGGTCTCTTTTTTCGCA
AATTTCGAGTCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGACAA
CATTCCTATTAATGAAAACAAATCTATGTGCTGCCCAACTGTATTAGCTG
CCAAAGTTGAGCAGTATTTCATCTGTATATTCTGCAAGAAGAAACTAGAA
AGACCTTCCAATAGCAAGATTTCTAAAGTTTCATGTGGGCCGTGCGAACG
TTCTATGCCCTTAAAAAGGTGCAAACTTGCCACCATCTGCGAAATAACCT
TTGATTATGCACACAACCAAACTACCTTAACAGCCTTTAATGATGTGGTT
GTCAACTTTTTTGGTGAGAATCTAAATGTTGATCAGTTAGAGGATTGTAT
ATTACAGATGGACCAACCCTTACGGAAACTAAATGCTCGTATTCCATTGA
AAACGAATATAGAATGCATTAAAATAGAATAAAATTCTAGGTTCAAAACT
TTGATGAATTTCTAATTCATTGGGTATCAAAATGTATTTAAATTCTAG

Coding sequence (CDS) from alignment at scaffold_507:242344..243841-

>TCONS_00069772 ID=TCONS_00069772|Name=TCONS_00069772|organism=Clytia hemisphaerica|type=CDS|length=987bp|location=Sequence derived from alignment at scaffold_507:242344..243841- (Clytia hemisphaerica)
GTGGAGATCGGTGATGAATGCACAAGCAAAAGTGATAAGAAGAATATTTA
TTTCGACATTGATTTCCAAAGATCCTCAACTGTCACCTCAAAAATCAGGA
TCATGAAGTCCAAAAAGTATGATCTTGGATATTTTAAAAACCTTGTGACG
AAAAAGCTACCCGTTTACCTCCAGGCACTTTCACCAACAAAGAATGGAAA
AATCTTTTTTAATGAGCTTCTGGGCAGTAGTGCTACTCTGCTTCATGAAA
ATTTGCCATTTGACCATTCCGTATTCACTTCTATTTCTGTAAGCGACATA
TTAAACGAAGAGCCAGATGGAACATTTACCGTGAAAGGTCAAATCAAGTG
GATTGGTGAAGCACGTTCTATAATGAGAAATGGTTACAACAAATCTGTGC
GTCATGCGAAATTGGTGGATCAAGCTGGAGATGCAATCAACATATCTATT
TGGGGTGGACTTATCGAGAAAGCTGTCACCATGAAAACTTTCAAGTTCAC
AAAAGTAGCTGTCTCGCACTTTAGAGGAGTTAATTTGACGACCACATGGG
ATTCAGATATAACTGAAGACAGTGATGAGGATGGTGTAAGCTATGCATGG
GAGAACATTCCTATTAATGAAAACAAATCTATGTGCTGCCCAACTGTATT
AGCTGCCAAAGTTGAGCAGTATTTCATCTGTATATTCTGCAAGAAGAAAC
TAGAAAGACCTTCCAATAGCAAGATTTCTAAAGTTTCATGTGGGCCGTGC
GAACGTTCTATGCCCTTAAAAAGGTGCAAACTTGCCACCATCTGCGAAAT
AACCTTTGATTATGCACACAACCAAACTACCTTAACAGCCTTTAATGATG
TGGTTGTCAACTTTTTTGGTGAGAATCTAAATGTTGATCAGTTAGAGGAT
TGTATATTACAGATGGACCAACCCTTACGGAAACTAAATGCTCGTATTCC
ATTGAAAACGAATATAGAATGCATTAAAATAGAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043446XLOC_043446Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069772-proteinTCONS_00069772-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069772-exon-scaffold_507-1575043694:243236..243841TCONS_00069772-exon-scaffold_507-1575043694:243236..243841Clytia hemisphaericaexon
TCONS_00069772-exon-scaffold_507-1575043694:242344..242790TCONS_00069772-exon-scaffold_507-1575043694:242344..242790Clytia hemisphaericaexon
TCONS_00069772-exon-scaffold_507-1510915933:243236..243841TCONS_00069772-exon-scaffold_507-1510915933:243236..243841Clytia hemisphaericaexon
TCONS_00069772-exon-scaffold_507-1510915933:242344..242790TCONS_00069772-exon-scaffold_507-1510915933:242344..242790Clytia hemisphaericaexon
TCONS_00069772-exon-scaffold_507-1491911889:243236..243841TCONS_00069772-exon-scaffold_507-1491911889:243236..243841Clytia hemisphaericaexon
TCONS_00069772-exon-scaffold_507-1491911889:242344..242790TCONS_00069772-exon-scaffold_507-1491911889:242344..242790Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_507supercontigscaffold_507:242344..243841 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.20512	0.459672	0.805688	0.404086	33.5404	24.703	14.4158	18.1575	12.4612	16.6531	10.6763	10.8244	6.51568	5.35099	4.02538	5.9328	9.50585	7.35705	1.91854	6.34701	7.29147	10.1002	2.06241	2.75567	4.92934	4.94704	7.22498	5.92219	3.52432	2.26405
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069772 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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