TCONS_00069781 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00069781
Unique Name	TCONS_00069781
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2172

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_508:117312..127197+
coding sequence from alignment at scaffold_508:117312..127197+

transcript sequence

>TCONS_00069781 ID=TCONS_00069781|Name=TCONS_00069781|organism=Clytia hemisphaerica|type=transcript|length=2172bp
AGATGAGTATGGATGTGACGCCTTAAATCAGTACTCACAGTTCTTGCATC
TCAGATggattttttaaagcaaattctatttttttcaataattttcttta
cAATTTCATGTCTCATTGAAACAGTTAAAGCATGGCAAAGTTGTCTGCCT
CTGGAGAGTGGCTTTTGGCAGAGTCAACCGTTCCAAATTGTGGTCCTGTG
GAGTTACAAAATAATTCTAAACTTCGTTCTTCCTCGTTTTTTGATTCAAG
AATATGCTATGAATGTGGTCACAATTTCCGTGCATGTGATTGTAAGACCT
GTTTAAAATGTGGAACACCTTTTATGACATATTTTGGGACTGGCTTCATT
AAAGGAAGATCTCATTGCAGAGTTTGCGCTTCACCAGTTTGTGTCACCTG
TATCGTGGTTATCAAAGGACTTGAAAAGGTATGTACGCGGTGccatttga
aacaaaaagaagaagagatATGTACAGAAAAGGCATTATCAGCTATCTGT
GAAGATAAATTTGGATTAGatGATTCATATGCAAATGTTTCGAAACTGAA
AACATTATCACAGAAAACTGATGCGCTCTTTGAGGCTGTGAAAAAAGgtt
TAGACCATGTGATGTTGACGTTGTTTAACAGTGGGTGCAGTGTGGACAGT
GTTGACTTCAAACAAAACACACCATTGTTTTATGCTGCAGAGGGAGGCTA
TTTACAGTGCATCGTTCTCTTGTTGGAAAAAGGTGCCAATATCAATGCAA
AAAATAATGTTGGCTGGACTCCATTACATGCAGTTTCTTGGAAAGGCAAA
TTAGAAAATTACACTGAATGTGCCAAATACTTGATCGAGATGGGAGCCGA
CGTGCTTTGTGAAAGTAATACCAAAGAGACAGCAGGCGATGTTGCACAAC
GATGCCATTCCAACGCTGATCTCGTGCAAATTCTCAAAGCTGCAGAAGTG
GAAGTTGCCATGAGAGAAGTTGGACGGAAAGTAACAAATTTATTAGCATC
AGCACCTACTTTGAAAGAACAACAATTTTGTCGATTGCTGTCCACGTTGC
TTCGTTATATCAAACAACATGCAGTCAATGCTATGGAGACCAGCCCTAAA
GAGAAGAAAAGTGAAACGGAAAAAGAAAATCCTAAAGAAGgagaaaaaga
ggaaaagaagaaaagtgaTCAAAAAGAGAATGAGGAAGAACAGgaaGGAG
TATCCCAAAAACGACTTTGTCATAAATGTAGAGGACCGACTTTATTGGGT
TCTTCTCCTTCACAAAGCGAGAAACCGAAAGCAGATGTTGAACCCATTGT
TCGCCCTTCTACTCCTAAATCACCTCCACCGCTACCTCCCGACGTCATTC
AAAATCTTGCCGAGATCAAACGATTAGAGAGAGAAAAATCGGATTGGGAA
GAAAGATGTCGAAAGTTGATGTCCTCCATTGCTTTGTCTACCAAGGATCA
CGAGAAACAGATTGAGGAGCTTCAAAATCAAATGCaacatttgaaagaag
aaaacCAAAACATCAAAACCAAGCGAGATGCAACATACGAAAACAAACTT
GCGAAGCTTCGACAAGAAAGTGAAGTTCAAATCAAAGAGATGGAAGAGAG
AGTTGATGAAAGCGAACAAGAGAAGACAGAAGTGCTCGTTCTGCAAACAC
AACACAAATTAACGTGGATACCTGACGACCTTGTGCACGAATGTCAAATC
AGTAAATGTAGAGCGCCTTTCACAAAGacgaCTCGTAAACACCACTGTCG
GTGCTGTGGTCGAGTGTTTTGCGCAAAATGCTCTCAACAAAAAGTCAAAC
TGGAACGTTTTGGATACACGAAACCAGTTCGTGTGTGTAATGTCTGTTAT
GCGCtgatcgatgacgtcatcagttagGTAATGTTGCCAGtcatattttt
attgttttctagAAAATATTTCATAACTTTTTATAGTATAATTCTGCATT
TTTGATTATCGGCAAGGAAGAAAAAATGTTCCCTTTCGTAAATAATAAAG
GCATTTTGTATCAGATGATACAGCAATACGAAAAATCTTGCTAATTTTAG
CCTACATATTCATATGGCCAAtgaagtctgtctcaaaataatctCNTAAT
ACGAAAAATCTTGCTAATTTTTGCCTACATATTCATATGGCCAAtgaagt
ctgtctcaaaataatctCCAAC

Run BLAST on NCBI

protein sequence of TCONS_00069781-protein

>TCONS_00069781-protein ID=TCONS_00069781-protein|Name=TCONS_00069781-protein|organism=Clytia hemisphaerica|type=polypeptide|length=581bp
MAKLSASGEWLLAESTVPNCGPVELQNNSKLRSSSFFDSRICYECGHNFR
ACDCKTCLKCGTPFMTYFGTGFIKGRSHCRVCASPVCVTCIVVIKGLEKV
CTRCHLKQKEEEICTEKALSAICEDKFGLDDSYANVSKLKTLSQKTDALF
EAVKKGLDHVMLTLFNSGCSVDSVDFKQNTPLFYAAEGGYLQCIVLLLEK
GANINAKNNVGWTPLHAVSWKGKLENYTECAKYLIEMGADVLCESNTKET
AGDVAQRCHSNADLVQILKAAEVEVAMREVGRKVTNLLASAPTLKEQQFC
RLLSTLLRYIKQHAVNAMETSPKEKKSETEKENPKEGEKEEKKKSDQKEN
EEEQEGVSQKRLCHKCRGPTLLGSSPSQSEKPKADVEPIVRPSTPKSPPP
LPPDVIQNLAEIKRLEREKSDWEERCRKLMSSIALSTKDHEKQIEELQNQ
MQHLKEENQNIKTKRDATYENKLAKLRQESEVQIKEMEERVDESEQEKTE
VLVLQTQHKLTWIPDDLVHECQISKCRAPFTKTTRKHHCRCCGRVFCAKC
SQQKVKLERFGYTKPVRVCNVCYALIDDVIS

Run BLAST on NCBI

transcript from alignment at scaffold_508:117312..127197+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00069781 ID=TCONS_00069781|Name=TCONS_00069781|organism=Clytia hemisphaerica|type=transcript|length=9886bp|location=Sequence derived from alignment at scaffold_508:117312..127197+ (Clytia hemisphaerica)
AGATGAGTATGGATGTGACGCCTTAAATCAGTACTCACAGTTCTTGCATC
TCAGATggattttttaaagcaaattctatttttttcaataattttcttta
cAATTTCATGTCTCATTGAAACAGTTAAAGCATGGCAAAGTTGTCTGCCT
CTGGAGAGTGGCTTTTGGCAGAGTCAACCGTTCCAAATTGTGGTCCTGTG
GAGTTACAAAATAATTCTAAACTTCGTTCTTGTAAGTATTAAAGCATATT
AAATCCGAGCTAAAATACTGTTTGTACAAGTCAAAAATCCTGTACATAAA
TACAAAATATGTCTCAAAACTTTGCGAACTCTTGACCTCAAAACTATTTT
CCAGTTCCCATTCTTCGTATGATCCTATTAGTTACTCCTTGATAGAGAAG
AACATTTTGAAAGAGTCTTGACGATTTTCTAAGAATTGAGATAATCAACT
TCAAGGGTTTAATTTCCtgataatttttgaacaaaaaacgTAGGAATTAT
TATTTATCATTATGAATTAATTTATTTGTTAATGCAGGTCAGGTTCTATC
TACAAAATTATATACAATTCTAATTGACAGAAAAAACTGATGTGGACCTG
TAggctaaaaaatgaaaaaataaagtgacCACTGCAAAGACAAAGCGTCT
GATTACATGCAAAACTTGAGAAGTTAGGATAAGGTTTAGTTTTATTTTAG
TTGGGGGTCGATACTAAAATTATGATATTTAGTGGTACGTGATGGTATac
caaaaaatcttaaaaattattttagtacAACGGGGTACTAAGATACCAAA
AAGATGGTATCTAGactaaaatttgagatttttttagtaaattggtacta
aaatttgtaattttcatAATTCAAGAAtcgttttcagaatttttagggaa
tttttcagaatttttgcaatttttcaaaaaaattaaaattttctcaggTA
AATAAAGTTTCTcaagttcaattatttttgcaTTCAGTCAAATGTCTTTA
AATTTTGTTCAATTCATAAACATTgtttaaaattataaattttttagaaa
aattaatattatgttgcaaaaatcagcgCAATGGTCCAGAGATGACAAAA
TTTGTTCCTAAAAGACCAAAATTGGGGGTGGTCTTTGTGTCTAAATGTAT
CTAAAAAACTATAGTACATGGGTACTAAAACACCACATCTCTAAAATGGG
GTGGTGGTATGCAAGAAATTCTCGAACACTCTttagtactcatatatgtc
tgaggttttatttataagtagGGTATGTATTATTAAGGCaagtaataaat
aaaatattcaaGGTTTAAAGGATTGATGCCTTGTATAGTACtggaaaaat
ttttctggaattAAAGCAAGAAAGTTGTGAGAGTTTGGAGGCAAAAATGC
TTGGATGTAATTTTGGAAGAATTGAATAAATAATATGAATAATATCATAC
ATAGGATCCATCCCCCCCCCCAgagaaagaaattttgtcgccattttcag
ccattttaactttcagaaatacaaaatttttcccattgcgTGGGATACAA
ACATCACAGTggcttaaaaatgagaaaacatactTTTGGAACCCCTGAGA
CTCAAGGGGATATTCCACGCTCATTCTTAGCTGGTTTACCTTTTAACCCG
TTAAGTGCCACTGGAATTATATGAGATTGACATGTCTGGATGATAGAATG
GTTGgttgtaaaattatcaaaattatcaGCCAATTAAAGGGTCCTCCTtt
acacaaaaattgaaaattcaacctttctccTTTTGTCGACAGATTtcctt
gaaatctttgaaaactagCAGAAAGTTTGTAGTATATAAAAATCTCTTGA
AACCCTCGAAAATTATAGTCAAAAATTACACccttgaatttgttgaaaaa
gaagtGCTGGCCGCCATGGAAGTATTTTCCCGGGAATgacaaaagagtaa
aaaatccctttttgtatttttaacaataaagaaattaaaaagggggtaac
tcaaagttggggggttactttagaattctaaaaattttgaggGTACCAAA
ATGATTGGGGGTACCTACATTTTTTGGGGGTACCTATACCCTGGAGGACC
CTATGTCATAGGGGTGTTATGATTATCTTttggtacacttttttttttta
taagaacaattttataagaacaatgaggctcaaaaatgccaaaaaataag
aacaatttaagaacaatcctgagcCTGGAGTTGCTGAGTTTTAGGTAAAA
TAAGGGCCAAATTAATGAAATTAGGGCTCAAACCCAAAAATACccccaaa
tttgccctaaaaataagaacaggataagaacaatttgaggctcgaagtgc
caaaaaaataagaacagccgagcctcgacaaaaatttactggttcttata
aaaaaaaaagtgtagtctAACAGGATCACTCacttctacaatcagtgcca
taacatattggcacttttggctaatttaccatttttcgaaaattgaagtt
cgagcgagaatgtcaatttcaggccttcaacttgatttcatcaattatta
gacttttaaggaaaatatttttcaaaatccttGATTTTTTTAACTGCTTT
TGCAATCGAGGCCATTTTTCGAGGACATGTATATGCATATTGGACTATTA
AAATAAAGCAATTTAACCCTAATTTTAGAATAGACAGAAAGATAAAATGA
TGAAACTCTTATTAATCTCAAAGCCATACATGTCAAACACGAATGAAAGT
AACTGAGCCAGCCAGAGAtcaggaaaaaacaaaaaatctcaatttaTATA
AAAGTGGACTCTTCTTCTGCTAAATGGTTTACAAAGAGGGTGTGGATTGG
GTTAACAGCCAAATAATTCAAACGATATGCTTTTTCTAATATATGGTCCA
TGCACCGCAAACTACCTAGGAAATTATATTCCAAAACATTTCGggcaatt
ttgataaaagaattGTTTACATGTATTAAAGCTTCAACTTTACAATTAAG
ATTTTAACCTTTTTGTGTTATTTTATTGTAGCTAGATTTATGATAGTTGA
AAATTGTTCGTGtggaaatattgatttttgatatCGCCACAATAcatatg
ttgttttttttcattgtagCCTCGTTTTTTGATTCAAGAATATGCTATGA
ATGTGGTCACAATTTCCGTGCATGTGATTGTAAGGTAAAGCTTAATTTTA
GGAATTATTCCTCTCTCGAGATAACATTCTTTTCTATTGAAGAATTGTTG
CAAATATGATATTTAAAAATAACAACTTTACAATAAAAAGGTAGTATTCT
GATAACTATTAAATCTCTTTTTATAGACCTGTTTAAAATGTGGAACACCT
TTTATGACATATTTTGGGACTGGCTTCATTAAAGGAAGGTTAGCGAGGAG
ACATTTAACTTCATTATCTTTTCTTACTATAATTgtaaaaaaacattatt
aattatTTAAGGCTGTAAAATGAATGTCCTTTGTCATATTGCAGATCTCA
TTGCAGAGTTTGCGCTTCACCAGTTTGTGTCACCTGTATCGTGGTTATCA
AAGGACTTGAAAAGGTGATATTTTGTAGTTGTTTAAGTGCAGTTTTACAT
GCTTTACATACTTTCTCTCCAGTTTAATAGCNAGTTGTTTAAGTGCAGTT
TTACATACTTTACATACTTTCTCTCCAGTTTAATAGCACCAGAGATTACT
TTAGGATGGTCTGAAAAATAAACTCTTGAAAAGAGGAATGATGAAGAATG
AATCAAAGTAACGCTAGGATGAAGAACTGCAACTCAGTTGGAATCAAAAT
TTGTATCACAACAcataaaattaatttctttaaaGAGGGTTTTCGTTCGA
AACCATTCTGGGTATTATCTACCACTATCCATATAAGCTTAAAAAACGTC
TGGAATAAGATTATTAGGTAATAGAACTTGcgataaaagaaacaaaaatt
gagATTGAATGAGCCTCGTGCGTTCCCAGGTTATATAATTTTGTTGGCTT
TTGGGTAGTTTTTAGTGTTTGTATTTTTGTGATTGCTGTGTTTATGTTTC
TGCTTAGCATTTTAAACTTTGTATCTATTNattatatatttttgttggtt
tgtttagTGTTTGTATTTTTGTGATTGCTGTGTTTATGTTTCTGCTTAGC
ATTTTAAACTTTATatctattggtttgttggttctttcctttttttgcat
aaaattctcatttcttgacagaatcATGTTGGATTGGTttaatttatata
tttagaaaaattctaaaaaatataaaataactgtataattataaaaatat
tagtctctttttatgtttcatttagTTTAGCACTTTCCACACTTCCTCTC
CTTGAGGTCACATATCTGACCTTTACTATATTATATACATGATTTGTAGG
ATTATCAAAACTTCATTAGGTATGTACGCGGTGccatttgaaacaaaaag
aagaagagatATGTACAGAAAAGGCATTATCAGCTATCTGTGAAGATAAA
TTTGGATTAGGTATGTCCTAGGGGATTGGAAGATTTAATTATGTCAAATT
CTGGTTCCTTTCCATACATTTAAGCGCcttataccaaaaaaattgttttt
catattttttttcagttagtcaACAATACTCTTAGGTGTCAGGGGTATAT
NCCAtatttttttcagttagtcAACAATACTCTTAGGTGTCAGGGGTATA
TATGCGTCTTGTAAGCACGTTGATCATTATCCTATGATAAAGGGTAACTA
TCTTAGGATTGGATCATGTCGTTTGCATCGGCGTTGTAatgcttttttga
cttttttagatGATTCATATGCAAATGTTTCGAAACTGAAAACATTATCA
CAGAAAACTGATGCGCTCTTTGAGGCTGTGAAAAAAGGTTTGATTTTCTA
CGAAAAGTCCtcatttttatctcttttcgttCATGTTGCTGCATGTTCTG
GTTCTTAACGTTATTATTATATCAAACCAACATTTATATCATAATCCAAA
ACAATATATGTAAAGCTTCATTAAATTCATTCGTTTTACAGAattcttta
cttttttatttcaggttTAGACCATGTGATGTTGACGTTGTTTAACAGTG
GGTGCAGTGTGGACAGTGTTGGTATGCTTGTCTTCTAACCGTACTCAATT
TGTCAGTcgcttttttaaagatttccttttgtttttaaaaaggaaataac
aaatatttactttttctttacAGACTTCAAACAAAACACACCATTGTTTT
ATGCTGCAGAGGGAGGCTATTTACAGTGCATCGTTCTCTTGTTGGTGAGT
GTTTTCCTTGACATACAAATTTTCTCTATCTAAACTATATCATCACTATC
TACATACTTACATAAGTTAAGTAACAGCTTTTATCTCTCCTTATAGCGGC
TGAGTAGAAGAAGCGTCAGACCTTTTTATCTGTTATAACCTCTTGTGAAT
TTTAATCTTTCAGGAAAAAGGTGCCAATATCAATGCAAAAAATAATGTAA
GATTTTTAgacagatttttttatttgtgcttctaaaaataaatttaatga
aaGGAAGAATTCAAACAGTTTTTACCGGAATCCTGAAATTGTATTCATTT
CTTTCTGATAGTCGTCCATTTTTAATTTATGAAGACTGCTTTTAAAGGAT
ATATGTGGTATTATACGCTTTTGCACTTGACAATAGGTTGGCTGGACTCC
ATTACATGCAGTTTCTTGGtaattatttctaattttttaataCCGTTATA
TTCACCTTAGTGATAGTAAATAATTAATCTTAATCTTGAAAGAATCTCAT
CAGTTGTTGTTTATTTATATTAGATTTTCTTTTCTATCTTCGAATTTCAG
GAAAGGCAAATTAGAAAATTACACTGAATGTGCCAAATACTTGATCGAGG
TCggttattgttattttcttatatttatTTGAGCTTGTTTTTTAACTGTT
ACTATTAATTGCAGTTAGACCGAAAGTAATAATAACCCTCAAATAAAGAT
GATATCTTTCCATCTTGTATTACGTTAAAAACCCGAAAAGCTTGAATTCA
CCGATCGTTTGGCTCTTGCTCGTTGTAGACCTTAATGTGTAAGAATAGGA
GCCGGCTTAATAATTTATTTCTCCTTTTTACGTTAAGATGGGAGCCGACG
TGCTTTGTGAAAGTAATACCAAAGAGACAGCAGGCGATGTTGCACAACGA
TGCCATTCCAACGCTGATCTCGTGCAAATTCTCAAAGCTGCAGAAGGTTC
CTTTGATTCTTTTCACAGTAATAGTATTACAAactcaaaatttacttttt
caaacGTGTAGAAACGCTTTACAAATATGTATAAGGCTTTTTCCTGGGTA
ACCAAGCGTAACCAACTAATTTCCAATaccgcaaaaaaaaacaaaaaaac
agtgGAGATAATAAACAGTAATCATTTATCCATTTCAGTGGAAGTTGCCA
TGAGAGAAGTTGGACGGAAAGTAACAAATTTATTAGGTAAATATGATTGG
CCAACACTAATGCATTATCATCAGATGTATCAATTGCAGGGGTATCTGAT
TTAACATTTTCTGCGAGAGATTTATCAAATCGGCATTCACCAACTAGGTT
ATTTTCTTATGGAAACTAACGCAGGGAAAGTGGttctattttgataaaaa
tggatgttttagaaaatcatgaacaaaaaaaataattttgtaagCAACTT
ATTCTGGTAAGAATAAGAATCACACAAGTACCTTTTCATTTCTCTTTCAA
ATACCAGCATCAGCACCTACTTTGAAAGAACAACAATTTTGTCGATTGCT
GTCCACGTTGCTTCGTTATATCAAACAACATGCAGTCAATGCTATGGAGA
CCAGCCCTAAAGGTATGCAATAAAATTCTTTCTTCGTCTCGGACAGCAAC
AGTGTCTTTCTGGATGTTCATTATATCACACTTTTGCTTATTTTTCAGAG
AAGAAGAGTGAAACGGAAAAAGAAAATCNGTCATGCTTTCTGGATGTTCA
TTATATCATGCTTTTGCTTATTTTTCAGAGAAGAAAAGTGAAACGGAAAA
AGAAAATCCTAAAGAAGgagaaaaagaggaaaagaagaaaagtgaTCAAA
AAGAGAATGAGGAAGAACAGGTTTGTTGCTCAAAAGTGCTGACCGCTGTT
TATTatgaatattttgttttttttgtactCGGGTCCTGCCCCGTTCCCGA
TGTGTTACTGGCCAAGGGGGACGGTGGCAGTGTTTAATGATAAGCTGGTG
AGGTTTTTGCTCAAGTTattcatttgtttatttttaggaaGGAGTATCCC
AAAAACGACTTTGTCATAAATGTAGAGGTATACTTTCTTCCACACTTTAA
GACTTTTGAAATTCATCCATAGCAATTAAGTTAACTAAATCTTATATTCG
ACAACATTTTTACTTCAGGACCGACTTTATTGGGTTCTTCTCCTTCACAA
AGCGAGAAACCGAAAGCAGATGTTGAACCCATTGTTCGCCCTTCTACTCC
TAAATCACCTCCACCGCTACCTCCCGACGTCATTCAAAATGTATGCACAA
TTTCTTTTGTTCCAAAGCTTTTCTTGTTATTGTGATCCTACCAACCTCGT
TTCCCACGTATCCTAGGCTTCATTGCGTTTtcgatttcagtcaaatccgc
caaatccgccaaattttctttccgccaaaatttcttcctaagCAATTTTA
GAGGGCTCCTAAAATACGATTTGAAGTTAACTCCCTTTCTCTTCCTCGAC
CCCTATGGGTTCTAGATGAAGTGCCTTCAAATGTCGCTGCTTTATTTAGT
TACCCTTAAAAAATTCGATTTAGCTTGCCGAGATCAAACGATTAGAGAGA
GAAAAATCGGATTGGGAAGAAAGATGTCGAAAGTTGATGTCCTCCATTGC
TTTGTCTACCAAGGTAATTCCAAtaatttgaaccaaaattcGGTATGACA
TTGTTTACAAATTAAATATTTCTCCGACGCTCTCTTtgcttttgtttatt
tatattttcttgtTGCTATATCCAGGATCACGAGAAACAGATTGAGGAGC
TTCAAAATCAAATGCaacatttgaaagaagaaaacCAAAACATCAAAACC
AAGGTATTGTTCCTCCTCCGATAGACTGGTATGATTGAGATTTTTATTCT
GCGAGATAAAGTCCTAAAATTAGCTACTTTTGTAACGCTGTTGCAGATTG
ACAGACATTCGAATGTTCTCCTTTTCACTAGCGAGATGCAACATACGAAA
ACAAACTTGCGAAGCTTCGACAAGAAAGTGAAGTTCAAATCAAAGAGGTA
AAAACGTTTCTTAAGTAATCAGGTCTACCCAACTGCTGATACAGTGTACC
TGTTTGAATAAAGTCACCTACCACTTGAACTGCTCAAATCTTGTATTATC
GGTAGATCCGTAGAATAGACAGAAAATCTGCATTTTATCGCTCAACCTTT
TCGTTGACAGATGGAAGAGAGAGTTGATGAAAGCGAACAAGAGAAGACAG
AAGTGCTCGTTCTGCAAACACAACACAAATTAACGTGGATACCTGACGAC
CTTGTGCACGAATGTCAAATCAGTAAATGTAGAGCGCCTTTCACAAAGGT
acaattgtttattcttcctTTACTTTAAGTGGGTTTTTACAAGCCTGTCC
AGGCCTACCACAGagcaagaaataaaaaataaaattaattctCGGCCTTG
CGTAACATTGGTTTGGCATTTATAATCAACGATTTCTTCTTGGTTACTGA
GATGATACATCAAGGTTATGTGTTAAACGGCCACTTTTGGTTTTATTATG
CCAAATTTCAGATAAGCATCATTTGACCTTTTTGAGCcatttttactaat
ttttttttcagacgaCTCGTAAACACCACTGTCGGTGCTGTGGTCGAGTG
TTTTGCGCAAAATGCTCTCAACAAAAAGTCAAGTAAGTCACTTTCTTACG
AATACTATGTTTTTTTTGGTCTTATAGAAAATTGGAGGGCGGGTTAAAGT
CTCTTTATCAATTTTCCagtaaaaatctataaaagggtattgagatgaaa
ttttgaattttagataaAGTAAAGACTGATTTCATCTAACGGAAACATGT
TCTTTCGATACAACGTGATAAAAATCAGTTCATTTTTACATGGTAATTCC
ATATGACTGTTttatcatagtcattataaaaacactggtctggaaggctt
ttgtctctttttattgttaaaagattgagcttacgtaccaaaatctgttt
attttgctaactttttgatcatgtgattggaaaatagaccaataccaaga
ggagattttggtaacgtgatcagaAAGTATGCAAACCGCAACTTgccttt
tgtttgtaacaaaagacaattgaacaaaaagctaaaacaatacattgcca
gaccgggattttttataatgactatggttttATCAAGAAGAAAGTTTTCA
CTGATTGATTTAACttaattaaaacattttgaaatgacTTTCAGATAACT
CACTTTTTTCAGACTGGAACGTTTTGGATACACGAAACCAGTTCGTGTGT
GTAATGTCTGTTATGCGCtgatcgatgacgtcatcagttagGTAATGTTG
CCAGtcatatttttattgttttctagAAAATATTTCATAACTTTTTATAG
TATAATTCTGCATTTTTGATTATCGGCAAGGAAGAAAAAATGTTCCCTTT
CGTAAATAATAAAGGCATTTTGTATCAGATGATACAGCAATACGAAAAAT
CTTGCTAATTTTAGCCTACATATTCATATGGCCAAtgaagtctgtctcaa
aataatctCNTAATACGAAAAATCTTGCTAATTTTTGCCTACATATTCAT
ATGGCCAAtgaagtctgtctcaaaataatctCCAAC

Coding sequence (CDS) from alignment at scaffold_508:117312..127197+

>TCONS_00069781 ID=TCONS_00069781|Name=TCONS_00069781|organism=Clytia hemisphaerica|type=CDS|length=1746bp|location=Sequence derived from alignment at scaffold_508:117312..127197+ (Clytia hemisphaerica)
ATGGCAAAGTTGTCTGCCTCTGGAGAGTGGCTTTTGGCAGAGTCAACCGT
TCCAAATTGTGGTCCTGTGGAGTTACAAAATAATTCTAAACTTCGTTCTT
CCTCGTTTTTTGATTCAAGAATATGCTATGAATGTGGTCACAATTTCCGT
GCATGTGATTGTAAGACCTGTTTAAAATGTGGAACACCTTTTATGACATA
TTTTGGGACTGGCTTCATTAAAGGAAGATCTCATTGCAGAGTTTGCGCTT
CACCAGTTTGTGTCACCTGTATCGTGGTTATCAAAGGACTTGAAAAGGTA
TGTACGCGGTGccatttgaaacaaaaagaagaagagatATGTACAGAAAA
GGCATTATCAGCTATCTGTGAAGATAAATTTGGATTAGatGATTCATATG
CAAATGTTTCGAAACTGAAAACATTATCACAGAAAACTGATGCGCTCTTT
GAGGCTGTGAAAAAAGgttTAGACCATGTGATGTTGACGTTGTTTAACAG
TGGGTGCAGTGTGGACAGTGTTGACTTCAAACAAAACACACCATTGTTTT
ATGCTGCAGAGGGAGGCTATTTACAGTGCATCGTTCTCTTGTTGGAAAAA
GGTGCCAATATCAATGCAAAAAATAATGTTGGCTGGACTCCATTACATGC
AGTTTCTTGGAAAGGCAAATTAGAAAATTACACTGAATGTGCCAAATACT
TGATCGAGATGGGAGCCGACGTGCTTTGTGAAAGTAATACCAAAGAGACA
GCAGGCGATGTTGCACAACGATGCCATTCCAACGCTGATCTCGTGCAAAT
TCTCAAAGCTGCAGAAGTGGAAGTTGCCATGAGAGAAGTTGGACGGAAAG
TAACAAATTTATTAGCATCAGCACCTACTTTGAAAGAACAACAATTTTGT
CGATTGCTGTCCACGTTGCTTCGTTATATCAAACAACATGCAGTCAATGC
TATGGAGACCAGCCCTAAAGAGAAGAAAAGTGAAACGGAAAAAGAAAATC
CTAAAGAAGgagaaaaagaggaaaagaagaaaagtgaTCAAAAAGAGAAT
GAGGAAGAACAGgaaGGAGTATCCCAAAAACGACTTTGTCATAAATGTAG
AGGACCGACTTTATTGGGTTCTTCTCCTTCACAAAGCGAGAAACCGAAAG
CAGATGTTGAACCCATTGTTCGCCCTTCTACTCCTAAATCACCTCCACCG
CTACCTCCCGACGTCATTCAAAATCTTGCCGAGATCAAACGATTAGAGAG
AGAAAAATCGGATTGGGAAGAAAGATGTCGAAAGTTGATGTCCTCCATTG
CTTTGTCTACCAAGGATCACGAGAAACAGATTGAGGAGCTTCAAAATCAA
ATGCaacatttgaaagaagaaaacCAAAACATCAAAACCAAGCGAGATGC
AACATACGAAAACAAACTTGCGAAGCTTCGACAAGAAAGTGAAGTTCAAA
TCAAAGAGATGGAAGAGAGAGTTGATGAAAGCGAACAAGAGAAGACAGAA
GTGCTCGTTCTGCAAACACAACACAAATTAACGTGGATACCTGACGACCT
TGTGCACGAATGTCAAATCAGTAAATGTAGAGCGCCTTTCACAAAGacga
CTCGTAAACACCACTGTCGGTGCTGTGGTCGAGTGTTTTGCGCAAAATGC
TCTCAACAAAAAGTCAAACTGGAACGTTTTGGATACACGAAACCAGTTCG
TGTGTGTAATGTCTGTTATGCGCtgatcgatgacgtcatcagttag

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_043453	XLOC_043453	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00069781-protein	TCONS_00069781-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_508	supercontig	scaffold_508:117312..127197 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.67837	2.71754	2.20908	1.37829	7.38058	5.51675	6.51574	6.19418	5.55186	5.80205	3.42665	4.13512	6.01806	5.6576	5.89971	6.17589	6.15557	7.84516	5.65853	6.67585	6.08048	4.91086	6.36642	6.748	9.15889	10.4427	7.32907	5.62958	7.18972	7.2845

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR002110	Ankyrin_rpt
IPR000306	Znf_FYVE
IPR020683	Ankyrin_rpt-contain_dom
IPR013083	Znf_RING/FYVE/PHD
IPR017455	Znf_FYVE-rel
IPR011011	Znf_FYVE_PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0046872	metal ion binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0005515	protein binding

Blast

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BLAST of TCONS_00069781 vs. Swiss-Prot (Human)
Match: LST2 (Lateral signaling target protein 2 homolog OS=Homo sapiens GN=ZFYVE28 PE=1 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 4.355e-16
Identity = 32/64 (50.00%), Postives = 41/64 (64.06%), Query Frame = 3

Query: 1665 WIPDDLVHECQISKCRAPFTKTTRKHHCRCCGRVFCAKCSQQKVKLERFGYTKPVRVCNVCYAL 1856
            W+PD+    C  + C+APFT   RKHHCR CG++FC++CS     L R+G  KPVRVC  CY  
Sbjct:  814 WVPDEACGFC--TACKAPFTVIRRKHHCRSCGKIFCSRCSSHSAPLPRYGQVKPVRVCTHCYMF 875

The following BLAST results are available for this feature:

BLAST of TCONS_00069781 vs. Swiss-Prot (Human)

BLAST of TCONS_00069781 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
LST2	4.355e-16	50.00	Lateral signaling target protein 2 homolog OS=Homo...	[more]

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TCONS_00069781 (transcript) - C. hemisphaerica