TCONS_00069791 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069791
Unique NameTCONS_00069791
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1330

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069791 ID=TCONS_00069791|Name=TCONS_00069791|organism=Clytia hemisphaerica|type=transcript|length=1330bp
TTTTATCCTCACTACTAATTATGTCTCTTCCTAACCTTGGTTGATCTTCA
GATATTAGACGACATAATTTATAACATTGAAAGTCAAATTTAATGAGTAT
GGAATCCTTCAACCTTACAGCTCTCTGCAACCTGACACAGGAAAGGATCA
AAGAACTTTATCACATTAGTGAAAATTCTGATAAAGCTGGTGACGCAACC
TGGATATTAACTTCTGCATTCATCATATTCACCATGCAAAGTGGGTTTGG
ATTACTGGAAGCAGGGAGCGTTTCATCCAAAAACGAATGTAACATCATGG
TAAAGAATGCAGTAGATGTTATTTTTGGTGGTCTTGGCTATTGGATTTGT
GGATTTGCATTCAGCTTTGGGGAAGATGAAACATATTCAAATGCTTTCAC
CGGTTTTGGCAGCTTCTTCACTGGTTCAAGCAACGACGACAATTCAGACA
TCATTCTATCGAAATATTTCTTCCAACTTTCATTTGCTACCACTGCAACA
ACCATTGTGTCAGGAGCGATGGCCGAACGCACCAATTTAAAAGCATACAT
GTTCTTCTCATTCATTAATTTTCTATCTTACGTTTTTCCTGCTCATTGGA
TATGGGCAGAGGGTGGATATTTTAAGATGAAAGGTGTTGTAGATGTGGCG
GGATGTGGTCCAGTACATGTGGTAGGAGGAACAGCGGCCATTGTTGCTTC
CATCATACTGAAACCAAGGACAGGAGTGTTTGACCATTCCCAAGATGAAA
AGAGAAATGAATATTCAACGATGGCCTCACCTACAAATGTGGTGTTGGGA
ACGTTCATGCTTTGGTGGGGATGGCTAGGATTCAATTGTGGATCAACCTT
CGGAGTTAGCGGAGGGAAATGGAAACTAGCTTCTCGTGCTGCAGTGACTA
CTGTTAATGCTTCAGTAGGAGGAGGCATCTGGTCTGTCTTTTATTGCTAT
GTGCTCACCAAAGAATACAACCACAAACTAGATATTGGAATCTTTACCAA
CTGTATTTTGGGTGGCTTAGTTTCGATCACAGCAATTTGTGCTTTGTGCA
AGCCCTGGGAGGCATTGCTGGTTGGAATGGCAGGCGGATTTATTGTTTCG
TACGGAGTGCTATTGATAGGTAAACTGAAAATTGATGATCCAGTATCTTG
TATTCCTGTTCATTGTTTCTGCGGCATGTGGGGAATGGTGTGTGTCGGCT
TGTTTGGCGAGAAAGATGAAGTAGAGAACATCAATTTGCAATATGGCGTT
GCTAAAGGTGGACCTGCTTCATTTCTTGGCTACCAGATTGCTGCTGCATT
GGCTATTGCTGCTTGGTCTGGTGTTTCAAC
Run BLAST on NCBI

protein sequence of TCONS_00069791-protein

>TCONS_00069791-protein ID=TCONS_00069791-protein|Name=TCONS_00069791-protein|organism=Clytia hemisphaerica|type=polypeptide|length=412bp
MSMESFNLTALCNLTQERIKELYHISENSDKAGDATWILTSAFIIFTMQS
GFGLLEAGSVSSKNECNIMVKNAVDVIFGGLGYWICGFAFSFGEDETYSN
AFTGFGSFFTGSSNDDNSDIILSKYFFQLSFATTATTIVSGAMAERTNLK
AYMFFSFINFLSYVFPAHWIWAEGGYFKMKGVVDVAGCGPVHVVGGTAAI
VASIILKPRTGVFDHSQDEKRNEYSTMASPTNVVLGTFMLWWGWLGFNCG
STFGVSGGKWKLASRAAVTTVNASVGGGIWSVFYCYVLTKEYNHKLDIGI
FTNCILGGLVSITAICALCKPWEALLVGMAGGFIVSYGVLLIGKLKIDDP
VSCIPVHCFCGMWGMVCVGLFGEKDEVENINLQYGVAKGGPASFLGYQIA
AALAIAAWSGVS
Run BLAST on NCBI

transcript from alignment at scaffold_508:84588..86827-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069791 ID=TCONS_00069791|Name=TCONS_00069791|organism=Clytia hemisphaerica|type=transcript|length=2240bp|location=Sequence derived from alignment at scaffold_508:84588..86827- (Clytia hemisphaerica)
TTTTATCCTCACTACTAATTATGTCTCTTCCTAACCTTGGTTGATCTTCA
GATATTAGACGACATAATTTATAACATTGAAAGTCAAATTTAATGAGTAT
GGAATCCTTCAACCTTACAGCTCTCTGCAACCTGACACAGGAAAGGATCA
AAGAACTTTATCACATTAGTGAAAATTCTGATAAAGCTGGTGACGCAACC
TGGATATTAACTTCTGCATTCATCATATTCACCATGCAAAGTGGGTTTGG
ATTACTGGAAGCAGGTGAAAACCATCTAGCTTTATTCAATAGAATATGCA
CTGTGAATAAGTTTAAAAATGAAAGAAGCTCATCACGACGAGTGAAAATG
TGCATTTAATATTCCAAAAAGTATCAGATTAATTTTAAAAGATACCTAAA
ATATTCTGTTAAAAATTAGTTCCCTCCCTAGTTGGGAACTTAATGAAAAT
TTCACCTTTTTCCATATTTCTAACACTATTCCAGGGAGCGTTTCATCCAA
AAACGAATGTAACATCATGGTAAAGAATGCAGTAGATGTTATTTTTGGTG
GTCTTGGCTATTGGATTTGTGGATTTGCATTCAGCTTTGGGGAAGATGAA
ACATATTCAAATGCTTTCACCGGTTAGTGAAGAATTCTTACTTTTTGTTA
TTTTTACCCTTGCACAGTCTGGTCATTACACTTCTTAGTGCAGTACCCGC
TAACCGGTATTTATTCATCAGATTTCATATTTTTCAACAAAAAGAATCTA
TTTACTTTGACAGGTTTTGGCAGCTTCTTCACTGGTTCAAGCAACGACGA
CAATTCAGACATCATTCTATCGAAATATTTCTTCCAACTTTCATTTGCTA
CCACTGCAACAACCATTGTGTCAGGAGCGATGGCCGAACGCACCAATTTA
AAAGCATACATGTTCTTCTCATTCATTAATTTTCTATCTTACGTTTTTCC
TGCTCATTGGATATGGGCAGAGGGTGGATATTTTAAGATGAAAGGTGTTG
TAGATGTGGCGGGATGTGGTCCAGTACATGTGGTAGGAGGAACAGCGGCC
ATTGTTGCTTCCATCATACTGAAACCAAGGTAACATTCCTTTGTATGTCT
GCTCCTTTCTGTAAATGTATTTTTCGCACCTTAAAACATGGCGATTTCAT
GAAGGGGTTTTAAAATCATAACAACTTATCAATTGTAGGACAGGAGTGTT
TGACCATTCCCAAGATGAAAAGAGAAATGAATATTCAACGATGGCCTCAC
CTACAAATGTGGTGTTGGGAACGTTCATGCTTTGGTGGGGATGGCTAGGA
TTCAATTGTGGATCAACCTTCGGAGTTAGCGGAGGTATAAAAAAGCAAAC
TATGAAGGCCAAAATTGTGGAAGATTTATAAGAATTCTTGTCAATTTCTT
TCAATTTTAGATTGCGGTTTATTACGGATTTAAGATTTCAATGTTTAAAT
CAAAAGCTTTCTTCAAGGCGCTTCCATTATGATCTTAATTAGTGAATGTT
ATTTTCTTTTACTCGTAGGGAAATGGAAACTAGCTTCTCGTGCTGCAGTG
ACTACTGTTAATGCTTCAGTAGGAGGAGGCATCTGGTCTGTCTTTTATTG
CTATGTGCTCACCAAAGAATACAACCACAAACTAGATATTGGAATCTTTA
CCAACTGTATTTTGGGTGGCTTAGTTTCGATCACAGCAATTTGTGCTTTG
TGCAAGCCCTGGGAGGCATTGCTGGTTGGAATGGCAGGCGGATTTATTGT
TTCGTACGGTGAGTGAGCGCACAACTATCGACGGATAGTATCATTTAATT
GTAGTATCAAATCAAACTTTTGCGAGAGAATGTTTTGGAAGGCTCTAATT
ATATTGCCTTTTGAATGATCTGTCTGTCCATTGCATCATAATTGTTTTCT
TTATCTTAGGAGTGCTATTGATAGGTAAACTGAAAATTGATGATCCAGTA
TCTTGTATTCCTGTTCATTGTTTCTGCGGCATGTGGGGAATGGTGTGTGT
CGGGTGAGTGACTGTTCTTCATTTGGCCATGAAACAAATGTGTTGAAAAT
ATTCAAAATATTCATCATCATTTCATTACAATACTTAAAATATCAGCCAC
CTTTTCAGCTTGTTTGGCGAGAAAGATGAAGTAGAGAACATCAATTTGCA
ATATGGCGTTGCTAAAGGTGGACCTGCTTCATTTCTTGGCTACCAGATTG
CTGCTGCATTGGCTATTGCTGCTTGGTCTGGTGTTTCAAC

Coding sequence (CDS) from alignment at scaffold_508:84588..86827-

>TCONS_00069791 ID=TCONS_00069791|Name=TCONS_00069791|organism=Clytia hemisphaerica|type=CDS|length=1236bp|location=Sequence derived from alignment at scaffold_508:84588..86827- (Clytia hemisphaerica)
ATGAGTATGGAATCCTTCAACCTTACAGCTCTCTGCAACCTGACACAGGA
AAGGATCAAAGAACTTTATCACATTAGTGAAAATTCTGATAAAGCTGGTG
ACGCAACCTGGATATTAACTTCTGCATTCATCATATTCACCATGCAAAGT
GGGTTTGGATTACTGGAAGCAGGGAGCGTTTCATCCAAAAACGAATGTAA
CATCATGGTAAAGAATGCAGTAGATGTTATTTTTGGTGGTCTTGGCTATT
GGATTTGTGGATTTGCATTCAGCTTTGGGGAAGATGAAACATATTCAAAT
GCTTTCACCGGTTTTGGCAGCTTCTTCACTGGTTCAAGCAACGACGACAA
TTCAGACATCATTCTATCGAAATATTTCTTCCAACTTTCATTTGCTACCA
CTGCAACAACCATTGTGTCAGGAGCGATGGCCGAACGCACCAATTTAAAA
GCATACATGTTCTTCTCATTCATTAATTTTCTATCTTACGTTTTTCCTGC
TCATTGGATATGGGCAGAGGGTGGATATTTTAAGATGAAAGGTGTTGTAG
ATGTGGCGGGATGTGGTCCAGTACATGTGGTAGGAGGAACAGCGGCCATT
GTTGCTTCCATCATACTGAAACCAAGGACAGGAGTGTTTGACCATTCCCA
AGATGAAAAGAGAAATGAATATTCAACGATGGCCTCACCTACAAATGTGG
TGTTGGGAACGTTCATGCTTTGGTGGGGATGGCTAGGATTCAATTGTGGA
TCAACCTTCGGAGTTAGCGGAGGGAAATGGAAACTAGCTTCTCGTGCTGC
AGTGACTACTGTTAATGCTTCAGTAGGAGGAGGCATCTGGTCTGTCTTTT
ATTGCTATGTGCTCACCAAAGAATACAACCACAAACTAGATATTGGAATC
TTTACCAACTGTATTTTGGGTGGCTTAGTTTCGATCACAGCAATTTGTGC
TTTGTGCAAGCCCTGGGAGGCATTGCTGGTTGGAATGGCAGGCGGATTTA
TTGTTTCGTACGGAGTGCTATTGATAGGTAAACTGAAAATTGATGATCCA
GTATCTTGTATTCCTGTTCATTGTTTCTGCGGCATGTGGGGAATGGTGTG
TGTCGGCTTGTTTGGCGAGAAAGATGAAGTAGAGAACATCAATTTGCAAT
ATGGCGTTGCTAAAGGTGGACCTGCTTCATTTCTTGGCTACCAGATTGCT
GCTGCATTGGCTATTGCTGCTTGGTCTGGTGTTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043457XLOC_043457Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069791-proteinTCONS_00069791-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069791-exon-scaffold_508-1575043694:86564..86827TCONS_00069791-exon-scaffold_508-1575043694:86564..86827Clytia hemisphaericaexon
TCONS_00069791-exon-scaffold_508-1575043694:86206..86343TCONS_00069791-exon-scaffold_508-1575043694:86206..86343Clytia hemisphaericaexon
TCONS_00069791-exon-scaffold_508-1575043694:85749..86064TCONS_00069791-exon-scaffold_508-1575043694:85749..86064Clytia hemisphaericaexon
TCONS_00069791-exon-scaffold_508-1575043694:85494..85639TCONS_00069791-exon-scaffold_508-1575043694:85494..85639Clytia hemisphaericaexon
TCONS_00069791-exon-scaffold_508-1575043694:85070..85309TCONS_00069791-exon-scaffold_508-1575043694:85070..85309Clytia hemisphaericaexon
TCONS_00069791-exon-scaffold_508-1575043694:84825..84918TCONS_00069791-exon-scaffold_508-1575043694:84825..84918Clytia hemisphaericaexon
TCONS_00069791-exon-scaffold_508-1575043694:84588..84719TCONS_00069791-exon-scaffold_508-1575043694:84588..84719Clytia hemisphaericaexon
TCONS_00069791-exon-scaffold_508-1510915933:86564..86827TCONS_00069791-exon-scaffold_508-1510915933:86564..86827Clytia hemisphaericaexon
TCONS_00069791-exon-scaffold_508-1510915933:86206..86343TCONS_00069791-exon-scaffold_508-1510915933:86206..86343Clytia hemisphaericaexon
TCONS_00069791-exon-scaffold_508-1510915933:85749..86064TCONS_00069791-exon-scaffold_508-1510915933:85749..86064Clytia hemisphaericaexon
TCONS_00069791-exon-scaffold_508-1510915933:85494..85639TCONS_00069791-exon-scaffold_508-1510915933:85494..85639Clytia hemisphaericaexon
TCONS_00069791-exon-scaffold_508-1510915933:85070..85309TCONS_00069791-exon-scaffold_508-1510915933:85070..85309Clytia hemisphaericaexon
TCONS_00069791-exon-scaffold_508-1510915933:84825..84918TCONS_00069791-exon-scaffold_508-1510915933:84825..84918Clytia hemisphaericaexon
TCONS_00069791-exon-scaffold_508-1510915933:84588..84719TCONS_00069791-exon-scaffold_508-1510915933:84588..84719Clytia hemisphaericaexon
TCONS_00069791-exon-scaffold_508-1491911889:86564..86827TCONS_00069791-exon-scaffold_508-1491911889:86564..86827Clytia hemisphaericaexon
TCONS_00069791-exon-scaffold_508-1491911889:86206..86343TCONS_00069791-exon-scaffold_508-1491911889:86206..86343Clytia hemisphaericaexon
TCONS_00069791-exon-scaffold_508-1491911889:85749..86064TCONS_00069791-exon-scaffold_508-1491911889:85749..86064Clytia hemisphaericaexon
TCONS_00069791-exon-scaffold_508-1491911889:85494..85639TCONS_00069791-exon-scaffold_508-1491911889:85494..85639Clytia hemisphaericaexon
TCONS_00069791-exon-scaffold_508-1491911889:85070..85309TCONS_00069791-exon-scaffold_508-1491911889:85070..85309Clytia hemisphaericaexon
TCONS_00069791-exon-scaffold_508-1491911889:84825..84918TCONS_00069791-exon-scaffold_508-1491911889:84825..84918Clytia hemisphaericaexon
TCONS_00069791-exon-scaffold_508-1491911889:84588..84719TCONS_00069791-exon-scaffold_508-1491911889:84588..84719Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_508supercontigscaffold_508:84588..86827 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0316483	0	0	0.0350578	0.128039	0.101178	0.0406889	0.190462	1.70684	2.34544	1.05811	1.11711	0.252579	0.262306	0.0179709	0.0385712	0.570198	0.292217	1.44664	1.79545	0.94858	0.492535	0.94347	0.72579	1.56305	1.48596	4.07923	5.00186	0	0.071578
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR024041NH4_transpt_AmtB-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0008519ammonium transmembrane transporter activity
Vocabulary: Biological Process
TermDefinition
GO:0015696ammonium transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015696 ammonium transport
cellular_component GO:0016020 membrane
molecular_function GO:0008519 ammonium transmembrane transporter activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069791 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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