|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069886 ID=TCONS_00069886|Name=TCONS_00069886|organism=Clytia hemisphaerica|type=transcript|length=3050bpRun BLAST on NCBI protein sequence of TCONS_00069886-protein >TCONS_00069886-protein ID=TCONS_00069886-protein|Name=TCONS_00069886-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1016bp LNSNINTVEEFVDHLTFLSRLSDDIPKLEIKYTEIIKLFNAAFHYKAILTRun BLAST on NCBI transcript from alignment at scaffold_511:194493..202958+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00069886 ID=TCONS_00069886|Name=TCONS_00069886|organism=Clytia hemisphaerica|type=transcript|length=8466bp|location=Sequence derived from alignment at scaffold_511:194493..202958+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_511:194493..202958+ >TCONS_00069886 ID=TCONS_00069886|Name=TCONS_00069886|organism=Clytia hemisphaerica|type=CDS|length=3048bp|location=Sequence derived from alignment at scaffold_511:194493..202958+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00069886 vs. Swiss-Prot (Human)
Match: DYH6 (Dynein heavy chain 6, axonemal OS=Homo sapiens GN=DNAH6 PE=2 SV=3) HSP 1 Score: 802.357 bits (2071), Expect = 0.000e+0 Identity = 441/1028 (42.90%), Postives = 638/1028 (62.06%), Query Frame = 1
Query: 19 TVEEFVDHLTFLSRLSDDIPKLEIKYTEIIKLFNAAFHYKAILTEEEKALYKTLGPCFHQLKSLVMYCEAKKDSKIQSFSEELDTIIEGFSRKLHQLANQIRNPSLLEYDPSYDVMETIVF-LKEDLQQLSDKAKSFANYXXXXXXXXXXXXXXXXXPIHSIFNPKPVSKVVDLQNDLSIVEKDLMLRQLLWQSLNEWDQLHQKWIETAFNFLDVNLLQKEVTRFVQTIYLMEKGLPPNQLVPSLKTKVHLFKYAMPVVISLRNPALKSRHWDEITCLI-GVVIKGDKYLTLGRLLDLQMFAYKDRISEISSQASNEQTLEQMLQKVIDFWKKTDLELLAH-SSRDVAIISGIDEIISMLDDSMVTISNIRGSRFHLFLQAQVNEWERKLNLFSRTFEEWVSVQRNWLYLETVFSAQDIQRQLPQEAKLFAQVDKNWRDIMRRTIDKPNALQAATSSGLLEVLQGCSSTLEKIHHSLEDYLETKRLVFSRFYFLSNDELLDILANSKNVKQVQVYLPKCFFNVNRLKFGMTQRAPVPICG---------------MISEEGEYMELTKSLKARGQVEQWLTNVESAMFDSVRNHLKKSLPELH---RTDFMKWIYQQH-GQIVLTSAQITFTSEVETILRHSPQTNSNDNQSLSDIGHGLKRKLDRLATVVLTESSLNK--RNVIISLMILLVHERDTVKNLIAQNVNEHNDFQWNRQLRYYWDDKQNNCFINQSIASFTYGYEYLGCTSRLVITPLTDRCFLTLTGAMHFHLXXXXXXXXXXXKSESVKDLAKALGKQCIVFNCSEDMGFKVMGRLLSGLAQSGSWCCLDEFNRIDREVLSVVAQQMHILRTAKLNKSVRFMFEGRDIRLNPTCGVFITMNPGYAGRQELPDNLKSLFRPVSMVIPDNTLIAEICLLSNGFTAAMKLSNKLVNIYELCKRQLSKQDHYDFGLRAIKAVLIMAGEKNRSRKTGSLSSIEERILKQAIQDSIQPKLITDDLKIFQQLFHDAFPTNDVNEQEPCLIEKAI 3030
T E+V L FL + + I LE + + +++ Y+ E+ A++ T+ P +++ + ++S I+ F L + +E + +++++ Q ++P +L+ D + I+ L+ L L +A + +Y+++F VSK L+ V +L L+QLLW S +EWD+L Q+W+++ F+ LD +L +V+++ + + +EKGLPPN +VP LK KV K +PV+I LRNP LK+RHW I + ++ + LTL RL L +F + I +IS QAS E LE +L+KV D WK T+ +L H S+DV I+ G D+I +LDDS + ++ + SR+ L+ +V+EW+++L LF++T EEW++ QRNWLYLE++F+A DIQRQLP EAK+F QVDK+W++IMR+ PNAL+AAT GLLE Q ++ L++I LE YLE+KR++F RFYFLSNDELL+ILA ++N + VQ +L KCF ++++L+F + A I G M+S EGE + L K LKARG VE+WL VE AMF S+R K ++ + RTD W+ H Q++LT +QI + ++ L +SN Q+L + +L+ LA +V + SL K RN++ +L+ + VH RD V L+ V F W RQLRYYWD +NC +++ +TYGYEYLG RLVITPLTDRC+L L GA+ LGGAP GPAGTGK+E+ KDLAKAL QC+VFNCS+ + +K+MGR SGLAQSG+WCC DEFNRID EVLSV+AQQ+ +R AK K RFMFEGR+I+L TC FITMNPGYAGR ELPDNLK+LFRP +M++P+ LIAE+ L S GF ++ L+ K+ +Y+LC QLS+QDHYDFG+RA+K+VL+MAG R + E+ +L +A+QDS PK +TDD +F + D FP + E + +++ I
Sbjct: 726 TTTEYVHSLLFLDEIQERIESLEDEGNIVTQMYKLMEQYQVPTPPEDFAVFATMKPSIVAVRNAIDKSVGDRESSIKQFCVHLGSDLEELNNEVNEVKLQAQDPQILDISADQDKIRLILNNLQSVLADLQKRAFQYKSYQKNFKVE--------------------VSKFEALEE----VSAELKLKQLLWDSFSEWDKLQQEWLKSKFDCLDPEVLNGQVSKYAKFVTQLEKGLPPNSVVPQLKYKVEKMKEKLPVIIDLRNPTLKARHWAAIEQTVDATLVDAEIPLTLERLSQLHVFDFGQEIQDISGQASGEAALEAILKKVEDSWKTTEFVILPHRDSKDVFILGGTDDIQVLLDDSTINVATLASSRYLGPLKTRVDEWQKQLALFNQTLEEWLTCQRNWLYLESIFNAPDIQRQLPAEAKMFLQVDKSWKEIMRKVNRLPNALRAATQPGLLETFQNNNALLDQIQKCLEAYLESKRVIFPRFYFLSNDELLEILAQTRNPQAVQPHLRKCFDSISKLEFALMPPAEGKIPGIDGEPEKVYTNDILAMLSPEGERVSLGKGLKARGNVEEWLGKVEEAMFTSLRRLCKAAIADYQGKLRTD---WVVAGHPSQVILTVSQIMWCRDLTECLETE---HSNHIQALKNFEKVNFERLNALAAIV--QGSLPKLHRNILTALITIDVHARDIVTELVQSKVETVESFDWQRQLRYYWDIDLDNCVARMALSQYTYGYEYLGACPRLVITPLTDRCYLCLMGALQLDLGGAPAGPAGTGKTETTKDLAKALAIQCVVFNCSDGLDYKMMGRFFSGLAQSGAWCCFDEFNRIDIEVLSVIAQQLITIRNAKAAKLSRFMFEGREIKLVMTCAAFITMNPGYAGRTELPDNLKALFRPFAMMVPNYALIAEVILYSEGFESSKILARKMTQMYKLCSEQLSQQDHYDFGMRAVKSVLVMAGSLKRENPDLN----EDVVLIRALQDSNLPKFLTDDALLFSGIISDLFPGVQIPEHDYGILQSTI 1717 The following BLAST results are available for this feature:
BLAST of TCONS_00069886 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.