TCONS_00069894 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069894
Unique NameTCONS_00069894
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3937

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069894 ID=TCONS_00069894|Name=TCONS_00069894|organism=Clytia hemisphaerica|type=transcript|length=3937bp
CAGACAATTTGCAATCTTTTGAGGAAAGACAACGACGTGCATATCACTTG
CTTGCAATCTTTAGTAATCATGAGACGAACTGTTTGCCGATTGGCTAAAT
GCGCTCCATTACCAAGCATCATCAAAGCCAAACTTGTTCCAATCCGTCTT
GCACAAATGCCAGAAGAAATCGCTTTAAGATGGATCATCATGGCTGAAAC
AGCTGCCGAACCAGAACTCCTCACACCACTCATCGAAATCATCAACGATG
TGAAAATCCCAACCATCCTTCGTGAAAGATGTATCTTAGCTTTACGCCCA
TTGTTACCAAGAATGCACACCAAAATCACTGCAACTTTACTCCGCGACAT
TGTAGAGAAAAAAGACCTCCCCTCTGGAATGAAAGTCTTAATGTACACCG
TACTTTTGGAGCGACCAACACCAATTGTCATTCACACTATCGTCCAAAAA
TTGATGACTATCGAAACATGTGAATTCAGAAGACAATTTGTCTACGAGAC
TATCTTATCCTTGATTCACAACAAAGAAATCCCCATCTCAAGAGAAACac
gCTTGGCATGCCAATACGCATTGACCGTTCTCCGAAGACAAGAAACCATC
TACAACCGTCTTACACGCCCTTCCATCATCCCAAGCAACACAATGACCAC
CCTCCGCCCATTGAGCAACGCCAACATTCGATTGACCATGAAAAACCAAG
TTCATTTGACCAGAGAATCATCCATGCCAAGACATTTGATCCACAACACC
GAAATTGAAATCTTAGGAAGACGAATCAATCTTTTGGATGTCGATTTACA
CGTGACCGGACTTCAACAATTAATCAACAAAATGATTAAGATTACTCCAG
AAGAAACTGTCATCCAACCATTGGAAATTGTCTCCACCATCAGAGTGCTT
GACGAACCAATGATGACTTTATACAAACGAGTTCAACGCAACGAAGCCAA
ACCCACTTTACTGGAGAAAGTCTTACCAAAAGATTTCGTTTTgtggaaaa
atttggctgaagaATTAAACAAAGACTTGACCATGGAGACTGAAAAGACA
ATGATGCCAGTCGAGCTTTTGATGATTCTTCCAACATCGACTGGTCTTCC
ATTAACCATGGAATTGAACACTATCTTGCACTACAAAATGAAGACaaaga
tgaacgttgaaacaccAAGCCTCTTCGATTTACCGAAACTCGCCTTCCAA
GAAAAAGacttgaaattgaaagccaGCTTGAACTTGAGATCAACCTTGAC
AGCTATCACCAGAGTGTTCATCGAAACAAGATTTGTCACTATCGGATTGA
AGAACTGTCGTGACGTCAGCACCATGTTGGACACTCGAACCAACATGACC
TTCAACCCTGAAACTATGAAGATTGCCAGTGACCTTCAAATGCCCAAAAT
ACCTGAAATTATGACCACTGAAGTTCACACCGAGCTTTTCATTGAACAAC
GAGTTGGACCAAAGAAGATCAACAAAGTCATCCCTACCATGATGGAACAT
ATCATGCCACGAGTTCACATCCTTGGAGAACCTCTGAAAACAACTGAAGA
ATTACACTCCAGAATCACATTGAAAGTTGGTGAAAAATACATCTCCGTCG
ATGAAAAAACAAGAGAAGTCATCCTGGCTGAACAGCCAATGAAATGGATT
GTTATTCCAAGACCAACCAATCAACGTTTCGTCGCATTACGGCATCCAAC
TCTTGGTTACGTCACTATTGACATGACAACCAAAGCTTTGAAAATCTCCA
CCGAAAAGCCAACATACTTCTTCATTGAGCATCACACTTTGGGAATTCAA
TTGAAAACCTTGGTACCACGTGACTTACCCACGATCCCCACTTTAGAAGA
GTTGAAGAAGCTTCAAAAACCAGTCATGGATTTGGTCATGCAATTCCAAT
CTCAACAATTGACAGATGAGATCATTCAAAGATTTGTCCTATGGAGAAAC
GTTGACCCACAAAAGGCTCTCCAAATCGTCTACGTTCGATTCTTGAACAA
CAAAGCTTCCATTGCACCCATCAAAGACACTGAATTGTCGATCCAAAAAC
AAATCATTGAATCTTCTACTGAACGAATCCGTTGTGAAGCAAGAAACCGT
GGAACCTGTTTGACCAAACAATCTCCAATCCTCCCAATCTGTATGTATGG
AGTCTTACCAAGACAAACTGTCCTGAATATCGATGCCCTCTTCATGCCAA
TGCTCTTTGAAGTTGCATTACCCGACCACTTGAAGAAAATCCACCTTGAA
CACACTTTGAAGACTGAAAACAAATTGGACATCAGCTTGACCAGAATTCA
ATTGATTGGAATGGAAAAAGAAATCAGACTTCGATTGGTTTTGGATGAAG
AGAGAATGCCACGTGAAATCACCATTGAACAATTTGCCAAAGGATTAACT
CAAGGAAATTTGGCTTGCTTACGACTTGCACCCACACCAAACTCATTCGA
ATTTTACATGAGCTTCGATCCTAAATGCATGATCAAACACGTTGAGATCA
CACCAGTAGCAATAACCAACAAATTGTGGCCACGATTACATATGGAATTC
AACTGGTTCGTCCGATTGGAGAAACTTCCATTACCCATCAGAAGAACTAT
CATCTCAATCTTGCAAACCATCTTCAATCCAGCAACCATCCATGGAATCG
AACGTCTTCCTTTGGAGATCACAACCAAAGAAATCTTCCCTGAATCAGAA
ATCACTAAAGGTACATTGTCCTTGAGAAAGCTTGGACCAGCATTGTTATC
CGTCAAATTAAACTCACCCTTCTTACCAGCATTCGAAATGGAAATTCCAA
TCTCAAAAAGAATCGAATCCTTACCAGGAATCTATGGTCCAAAAACTCTC
ACCAGATTCACTAAACTTGCAACAAGACGTGTCTGCACTCTCTTGAGAGA
CACGATGACtacttttgatgatgttgaTTATAAATTCACAATGCCAACAC
CAAAATGTGAACAAATTCTTGTTGaaacaacaaaagaattgaGAGGTGTC
AAAGTAACCACACAAAAAGCTGGACGATTCCAAATCCTTCGATTGAGAAT
TAATGATGTCATTGTTGAAGTTGTTCCTACCAAAGAAACTGTTATTCCAA
CCGTCAAGATCAACGGCAAAGAAACCGAAGTCAAACCTGACCAAAAAATA
ATCTTACCAAACAAACTTGTCATGATAGTACGATGGGTTGAAGACCTCAG
AGAATTCAGAATCGTGATTAATCATCTTATGATGGAATTGAGCATGAGAT
CAGGAAACATCATCTCTATTGCTATGGAACCAACTGTCTACATGGGACAA
GTTCACGGTATGTGCGGTCACATGGATATGGAGAAAAGCAAAGAAATGAT
GACACCTGAAAAAGTTGCTGTTACAGACCctgaattgtttattttgactt
gGTTGAACCCAGCTACCAAATGCACACAGAAAGAATGTCCAATGATCCGA
TCTGTCATTCCAACCGAAGCTGGATGTCGTCCAATCATGGCTTTGCCAAC
ATGCATGGAAAAATGTCAACCCATAAAAGAAGTTCTCATTAAAGAAGTTC
CAGTGAAATGCGCTCGTGGTGAACAAAAAATGCTTCCTATGAAAGTTCCA
ATTGAGTGTCAATGTACTTGCTAGACATTTAACCCATTTTGCCAAACCCA
AAGTCTTTTTCTCTAGAAGTGCTAATCTTTTTTTAATACTTATTcaattt
atattattttgtagattttataaaacttatgaaaaactaaaaaaatattt
ctacagCAGCAAAGTTGCAAAACCTTActgaaatttgaattatttatcAT
CCTTGAATCaatactaaaaaaaaacaatcaggTTTGAAAagatcgttttc
aaaatacACTTGCTATGATTTATAATCTAAATATATGGTTTGCAAACTAG
TTGGCCTATAAATTTTGAACGAATTACAAAAATAAGT
Run BLAST on NCBI

protein sequence of TCONS_00069894-protein

>TCONS_00069894-protein ID=TCONS_00069894-protein|Name=TCONS_00069894-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1207bp
QTICNLLRKDNDVHITCLQSLVIMRRTVCRLAKCAPLPSIIKAKLVPIRL
AQMPEEIALRWIIMAETAAEPELLTPLIEIINDVKIPTILRERCILALRP
LLPRMHTKITATLLRDIVEKKDLPSGMKVLMYTVLLERPTPIVIHTIVQK
LMTIETCEFRRQFVYETILSLIHNKEIPISRETRLACQYALTVLRRQETI
YNRLTRPSIIPSNTMTTLRPLSNANIRLTMKNQVHLTRESSMPRHLIHNT
EIEILGRRINLLDVDLHVTGLQQLINKMIKITPEETVIQPLEIVSTIRVL
DEPMMTLYKRVQRNEAKPTLLEKVLPKDFVLWKNLAEELNKDLTMETEKT
MMPVELLMILPTSTGLPLTMELNTILHYKMKTKMNVETPSLFDLPKLAFQ
EKDLKLKASLNLRSTLTAITRVFIETRFVTIGLKNCRDVSTMLDTRTNMT
FNPETMKIASDLQMPKIPEIMTTEVHTELFIEQRVGPKKINKVIPTMMEH
IMPRVHILGEPLKTTEELHSRITLKVGEKYISVDEKTREVILAEQPMKWI
VIPRPTNQRFVALRHPTLGYVTIDMTTKALKISTEKPTYFFIEHHTLGIQ
LKTLVPRDLPTIPTLEELKKLQKPVMDLVMQFQSQQLTDEIIQRFVLWRN
VDPQKALQIVYVRFLNNKASIAPIKDTELSIQKQIIESSTERIRCEARNR
GTCLTKQSPILPICMYGVLPRQTVLNIDALFMPMLFEVALPDHLKKIHLE
HTLKTENKLDISLTRIQLIGMEKEIRLRLVLDEERMPREITIEQFAKGLT
QGNLACLRLAPTPNSFEFYMSFDPKCMIKHVEITPVAITNKLWPRLHMEF
NWFVRLEKLPLPIRRTIISILQTIFNPATIHGIERLPLEITTKEIFPESE
ITKGTLSLRKLGPALLSVKLNSPFLPAFEMEIPISKRIESLPGIYGPKTL
TRFTKLATRRVCTLLRDTMTTFDDVDYKFTMPTPKCEQILVETTKELRGV
KVTTQKAGRFQILRLRINDVIVEVVPTKETVIPTVKINGKETEVKPDQKI
ILPNKLVMIVRWVEDLREFRIVINHLMMELSMRSGNIISIAMEPTVYMGQ
VHGMCGHMDMEKSKEMMTPEKVAVTDPELFILTWLNPATKCTQKECPMIR
SVIPTEAGCRPIMALPTCMEKCQPIKEVLIKEVPVKCARGEQKMLPMKVP
IECQCTC
Run BLAST on NCBI

transcript from alignment at scaffold_511:285053..291729+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069894 ID=TCONS_00069894|Name=TCONS_00069894|organism=Clytia hemisphaerica|type=transcript|length=6677bp|location=Sequence derived from alignment at scaffold_511:285053..291729+ (Clytia hemisphaerica)
CAGACAATTTGCAATCTTTTGAGGAAAGACAACGACGTGCATATCACTTG
CTTGCAATCTTTAGTAATCATGAGACGAACTGTTTGCCGATTGGCTAAAT
GCGCTCCATTACCAAGCGTAAGTAATTTCTCTTACTTTGAAATGTCTTCA
gaagtacagttgacgctctctaattcgatcttcaaggggaatcggatttt
catcgaataagggggcttatcgaatagtagaacgtcgtttatgagagttt
cttgttgacggggactttaaatttcatcgaataagggagcctatcgaata
gtagaacgtcgtttatgagagtttcttgttgacggggactttaaatttca
tcgaataagggagcctatcgaatagtagaacgtcggataagagagcgtca
actgtatatgtGAAGATTTAATCTGATGATTCTCTCTCGGCAGTACAATA
TCGTGAATTTTACAGATGATAAAATATCGGGACATTTGCAGTGTCATTTA
TCAGGGCATGAACCGAGAAATAGGACAAGCAAGACATCAATCTCGTcctt
taaaaaataaactttaagTAAGATAAGAGCCGCAGTCGATCTTATGAACA
ATTCGGATTTCAGattctttacttttgagatCCTATTTTTCAATAGATCA
TCAAAGCCAAACTTGTTCCAATCCGTCTTGCACAAATGCCAGAAGAAATC
GCTTTAAGATGGATCATCATGGCTGAAACAGCTGCCGAACCAGAACTCCT
CACACCACTCATCGAAATCATCAACGATGTGAAAATCCCAACCATCCTTC
GTGAAAGATGTATCTTAGCTTTACGCCCATTGTTACCAAGAATGCACACC
AAAATCACTGCAACTTTACTCCGCGACATTGTAGAGAAAAAAGACCTCCC
CTCTGGAATGAAAGTCTTAATGTACACCGTACTTTTGGAGCGACCAACAC
CAATTGTCATTCACACTATCGTCCAAAAATTGATGACTATCGAAACATGT
GAATTCAGAAGACAATTTGTCTACGAGACTATCTTATCCTTGATTCACAA
CAAAGAAATCCCCATCTCAAGAGAAACGTAAGAACAGTTTTCCTCTCTTT
TGAAACTTTAAATTGATTGCAATCTTGATTAGCAATTCGTTCAATGTAAC
TTGATGTTGCCTTACAAACGACCTTTGGCTGAATCTAAAACCTGCTCATC
ATTAAAACCTGACaacatgttttatttttcagacgCTTGGCATGCCAATA
CGCATTGACCGTTCTCCGAAGACAAGAAACCATCTACAACCGTCTTACAC
GCCCTTCCATCATCCCAAGCAACACAATGACCACCCTCCGCCCATTGAGC
AACGCCAACATTCGATTGACCATGAAAAACCAAGTTCATTTGACCAGAGA
ATCATCCATGCCAAGACATTTGATCCACAACACCGAAATTGAAATCTTAG
GAAGACGAATCAATCTTTTGGATGTCGATTTACACGTGACCGGACTTCAA
CAATTAATCAACAAAATGATTAAGGTATTACATTCATCTATATTACCAAA
CTCTTTTTCGCAGAAAATACAGAAACCAAATCGAACGTGTGTTTTTGGGT
TGTTAAACAGGCTAACGCACTGTTATCAAACATTAACCTTGAAATTGTCC
AATTTTATCATTGGCTAAGCTACAaatatgaatttataatttgcaaaatt
tagAGCCTTAGCACTTATTGAAACAAACACGAAGAATCTAATAAAGTCGA
TGAAAGAACTTGGAGCAAATTCGATTAACTTTCTCAAATTCCTAACTGGA
TAAACTTTATTAATTTGAATATTTGTTTACAGATTACTCCAGAAAAAACT
GTCATCNAAATTCCTAACTGGATAAACTTTATTAATTTGAATATTTGTTT
ACAGATTACTCCAGAAGAAACTGTCATCCAACCATTGGAAATTGTCTCCA
CCATCAGAGTGCTTGACGAACCAATGATGACTTTATACAAACGAGTTCAA
CGCAACGAAGCCAAACCCACTTTACTGGAGAAAGTCTTACCAAAAGATTT
CGTTTTgtggaaaaatttggctgaagaATTAAACAAAGACTTGACCATGG
AGACTGAAAAGGTACTTTGGAACAAATCTTGTTACATCCATAACTTTCTA
CAATTGGAGCTTACAAATTGTCTAATCATTATGATACCACGAgtaaacaa
gaaaatattttactatAGATTGTGGCATAGTTTTGGACATTTTAGCTATG
AATCTTTTTAGGGTTGGAAACTTGGAGCCATTTCAAAAACTCCTAACTCA
AATCATTTTATCTATTTTCCTCTCTTTAGACAATGATGCCAGTCGAGCTT
TTGATGATTCTTCCAACATCGACTGGTCTTCCATTAACCATGGAATTGAA
CACTATCTTGCACTACAAAATGAAGACaaagatgaacgttgaaacaccAA
GCCTCTTCGATTTACCGAAACTCGCCTTCCAAGAAAAAGacttgaaattg
aaagccaGCTTGAACTTGAGGTAAGAGAAATCCTTTTTATAATATAAacc
taaaatcaattttagccATAGCTTACATTTTAATCTTCCTACTCTTAGNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNccccccccccc
cccccccagaccttattaggaccccccgtttattaatttttaagaatttt
tttacttgacaaAAAGAAGTCCCCGTATCTTGCTCCAAAAAGTCTGATTT
TAGCCAATATTTACCTTACAGTACAATTTTCCTTTCTTTACAAAAGCAGT
CAATTTGCTTTTAGAACTTTGATAACCTAAGATGAGTTTAAAAGATATAT
TTCATACAGCTAATTTTAAAGTAAGTCTGTAACTCTATTCTAACTCTAAA
GTAACTCTATTCGTCATTTTTCTAGATCAACCTTGACAGCTATCACCAGA
GTGTTCATCGAAACAAGATTTGTCACTATCGGATTGAAGAACTGTCGTGA
CGTCAGCACCATGTTGGACACTCGAACCAACATGACCTTCAACCCTGAAA
CTATGAAGATTGCCAGTGACCTTCAAATGCCCAAAATACCTGAAATTATG
ACCACTGAAGTTCACACCGAGCTTTTCATTGAACAACGAGTTGGACCAAA
GAAGATCAACAAAGTCATCCCTACCATGATGGAACATATCATGCCACGAG
TTCACATCCTTGGAGAACCTCTGAAAACAACTGAAGAATTACACTCCAGA
ATCACATTGAAAGTTGGTGAAAAATACATCTCCGTCGATGAAAAAACAAG
AGAAGTCATCCTGGCTGAACAGCCAATGAAATGGATTGTTATTCCAAGAC
CAACCAATCAACGTTTCGTCGCATTACGGCATCCAACTCTTGGTTACGTC
ACTATTGACATGACAACCAAAGCTTTGAAAATCTCCACCGAAAAGCCAAC
ATACTTCTTCATTGAGCATCACACTTTGGGAATTCAATTGAAAACCTTGG
TACCACGTGACTTACCCACGATCCCCACTTTAGAAGAGTTGAAGAAGCTT
CAAAAACCAGTCATGGATTTGGTCATGCAATTCCAATCTCAACAATTGAC
AGATGAGATCATTCAAAGATTTGTCCTATGGAGAAACGTAAGGACTTCTT
TAAACTATCATTAGTTTCTGCTTCATATCccattctttgtttttattaat
tgttGTATCAACTGCAAAGCAGAAAAAAGAACATCAACTACATAAATTGT
AATTTTTAGGTTGACCCACAAAAGGCTCTCCAAATCGTCTACGTTCGATT
CTTGAACAACAAAGCTTCCATTGCACCCATCAAAGACACTGAATTGTCGA
TCCAAAAACAAATCATTGAATCTTCTACTGAACGAATCCGTTGTGAAGCA
AGAAACCGTGGAACCTGTTTGACCAAACAATCTCCAATCCTCCCAATCTG
TATGTATGGAGTCTTACCAAGACAAACTGTCCTGAATATCGATGCCCTCT
TCATGCCAATGCTCTTTGAAGTTGCATTACCCGACCACTTGAAGAAAATC
CACCTTGAACACACTTTGAAGACTGAAAACAAATTGGACATCAGCTTGAC
CAGAGTacgtttgattttttatatattCAAAGCTTTTGGTAATACTCTTG
CAATGAAATAGCAACTTCAATTTTCCTCACAATAATAAATTTAAAGAAGA
TTTGCAAtattcaaaaatctaaaaaagaacCTTTTTTTCTCTTCGACTCT
TTTAGATTCAATTGATTGGAATGGAAAAAGAAATCAGACTTCGATTGGTT
TTGGATGAAGAGAGAATGCCACGTGAAATCACCATTGAACAATTTGCCAA
AGGATTAACTCAAGGAAATTTGGCTTGCTTACGACTTGCACCCACACCAA
ACTCATTCGAATTTTACATGAGCTTCGATCCTAAATGCATGATCAAACAC
GTTGAGGTTAGTATTATTACCACATTGTTTATGAAGTCAAAAATGTGTAA
AGACTCAAAGTTAATGGGATATATTCAAGTTAAACAATATATTCAAGTTA
AAACAATATATTCAACATTTTAAGCTTTCCGAACTGTTAACAATCAACAT
AAAATTTCGAACATCTCTTAGCTTGCTTGAAGAATCAGTTCTGAAGTGAA
GTAAAGTCTATAACATTTCACTTTTATCTACCATCCAATAGATCACACCA
GTAGCAATAACCAACAAATTGTGGCCACGATTACATATGGAATTCAACTG
GTTCGTCCGATTGGAGAAACTTCCATTACCCATCAGAAGAACTATCATCT
CAATCTTGCAAACCATCTTCAATCCAGCAACCATCCATGGAATCGAACGT
CTTCCTTTGGAGATCACAACCAAAGAAATCTTCCCTGAATCAGAAATCAC
TAAAGGTACATTGTCCTTGAGAAAGCTTGGACCAGCATTGTTATCCGTCA
AATTAAACTCACCCTTCTTACCAGCATTCGAAATGGAAATTCCAATCTCA
AAAAGAATCGAATCCTTACCAGGAATCTATGGTCCAAAAACTCTCACCAG
ATTCACTAAACTTGCAACAAGACGTGTCTGCACTCTCTTGAGAGACACGA
TGACtacttttgatgatgttgaTTATAAATTCACAATGCCAACACCAAAA
TGTGAACAAATTCTTGTTGaaacaacaaaagaattgaGAGGTGTCAAAGT
AACCACACAAAAAGCTGGACGATTCCAAATCCTTCGATTGAGAATTAATG
ATGTCATTGTTGAAGTTGTTCCTACCAAAGAAACTGTTATTCCAACCGTC
AAGGTGAGCTTTTACCATATATAATCTTGTTCTACTTTTTTGACTTGAAC
TTTAGTGAGAGCTGTAAAGGAAAACTGTTTAcattaaataagaaaaataa
aaaggtcaaaGTAAAGTCTCaacaaatgaaatatttttcttttcttcacc
TAGATCAACGGCAAAGAAACCGAAGTCAAACCTGACCAAAAAATAATCTT
ACCAAACAAACTTGTCATGATAGTACGATGGGTTGAAGACCTCAGAGAAT
TCAGAATCGTGATTAATCATCTTATGATGGAATTGAGCATGAGATCAGGA
AACATCATCTCTATTGCTATGGAACCAACTGTCTACATGGGACAAGTTCA
CGGTATGTGCGGTCACATGGATATGGAGAAAAGCAAAGAAATGATGACAC
CTGAAAAAGTTGCTGTTACAGACCctgaattgtttattttgacttgGTTG
AACCCAGCTACCAAATGCACACAGAAAGGTTaggagaaaataattttaaa
tttcaacataAAACGTTGACTTTTTTCATGAGAAAAACCTTGATGGTATT
CACATCAATTTCAgtgctttttttttaaagtcataCATCCAAACTGTAAT
ATCAATGTCCAAAGTGTTTAACTTAactgtttaaattttgaaaaagctaA
TAAGACAgaaaaaagatgttaattacaCGTAATGGATGTGATAGTAATAA
CCTCTTATAACCTCTTTTATTAGAATGTCCAATGATCCGATCTGTCATTC
CAACCGAAGCTGGATGTCGTCCAATCATGGCTTTGCCAACATGCATGGAA
AAATGTCAACCCATAAAAGAAGTTCTCATTAAAGAAGTTCCAGTGAAATG
CGCTCGTGGTGAACAAAAAATGCTTCCTATGAAAGTTCCAATTGAGTGTC
AATGTACTTGCTAGACATTTAACCCATTTTGCCAAACCCAAAGTCTTTTT
CTCTAGAAGTGCTAATCTTTTTTTAATACTTATTcaatttatattatttt
gtagattttataaaacttatgaaaaactaaaaaaatatttctacagCAGC
AAAGTTGCAAAACCTTActgaaatttgaattatttatcATCCTTGAATCa
atactaaaaaaaaacaatcaggTTTGAAAagatcgttttcaaaatacACT
TGCTATGATTTATAATCTAAATATATGGTTTGCAAACTAGTTGGCCTATA
AATTTTGAACGAATTACAAAAATAAGT

Coding sequence (CDS) from alignment at scaffold_511:285053..291729+

>TCONS_00069894 ID=TCONS_00069894|Name=TCONS_00069894|organism=Clytia hemisphaerica|type=CDS|length=3624bp|location=Sequence derived from alignment at scaffold_511:285053..291729+ (Clytia hemisphaerica)
CAGACAATTTGCAATCTTTTGAGGAAAGACAACGACGTGCATATCACTTG
CTTGCAATCTTTAGTAATCATGAGACGAACTGTTTGCCGATTGGCTAAAT
GCGCTCCATTACCAAGCATCATCAAAGCCAAACTTGTTCCAATCCGTCTT
GCACAAATGCCAGAAGAAATCGCTTTAAGATGGATCATCATGGCTGAAAC
AGCTGCCGAACCAGAACTCCTCACACCACTCATCGAAATCATCAACGATG
TGAAAATCCCAACCATCCTTCGTGAAAGATGTATCTTAGCTTTACGCCCA
TTGTTACCAAGAATGCACACCAAAATCACTGCAACTTTACTCCGCGACAT
TGTAGAGAAAAAAGACCTCCCCTCTGGAATGAAAGTCTTAATGTACACCG
TACTTTTGGAGCGACCAACACCAATTGTCATTCACACTATCGTCCAAAAA
TTGATGACTATCGAAACATGTGAATTCAGAAGACAATTTGTCTACGAGAC
TATCTTATCCTTGATTCACAACAAAGAAATCCCCATCTCAAGAGAAACac
gCTTGGCATGCCAATACGCATTGACCGTTCTCCGAAGACAAGAAACCATC
TACAACCGTCTTACACGCCCTTCCATCATCCCAAGCAACACAATGACCAC
CCTCCGCCCATTGAGCAACGCCAACATTCGATTGACCATGAAAAACCAAG
TTCATTTGACCAGAGAATCATCCATGCCAAGACATTTGATCCACAACACC
GAAATTGAAATCTTAGGAAGACGAATCAATCTTTTGGATGTCGATTTACA
CGTGACCGGACTTCAACAATTAATCAACAAAATGATTAAGATTACTCCAG
AAGAAACTGTCATCCAACCATTGGAAATTGTCTCCACCATCAGAGTGCTT
GACGAACCAATGATGACTTTATACAAACGAGTTCAACGCAACGAAGCCAA
ACCCACTTTACTGGAGAAAGTCTTACCAAAAGATTTCGTTTTgtggaaaa
atttggctgaagaATTAAACAAAGACTTGACCATGGAGACTGAAAAGACA
ATGATGCCAGTCGAGCTTTTGATGATTCTTCCAACATCGACTGGTCTTCC
ATTAACCATGGAATTGAACACTATCTTGCACTACAAAATGAAGACaaaga
tgaacgttgaaacaccAAGCCTCTTCGATTTACCGAAACTCGCCTTCCAA
GAAAAAGacttgaaattgaaagccaGCTTGAACTTGAGATCAACCTTGAC
AGCTATCACCAGAGTGTTCATCGAAACAAGATTTGTCACTATCGGATTGA
AGAACTGTCGTGACGTCAGCACCATGTTGGACACTCGAACCAACATGACC
TTCAACCCTGAAACTATGAAGATTGCCAGTGACCTTCAAATGCCCAAAAT
ACCTGAAATTATGACCACTGAAGTTCACACCGAGCTTTTCATTGAACAAC
GAGTTGGACCAAAGAAGATCAACAAAGTCATCCCTACCATGATGGAACAT
ATCATGCCACGAGTTCACATCCTTGGAGAACCTCTGAAAACAACTGAAGA
ATTACACTCCAGAATCACATTGAAAGTTGGTGAAAAATACATCTCCGTCG
ATGAAAAAACAAGAGAAGTCATCCTGGCTGAACAGCCAATGAAATGGATT
GTTATTCCAAGACCAACCAATCAACGTTTCGTCGCATTACGGCATCCAAC
TCTTGGTTACGTCACTATTGACATGACAACCAAAGCTTTGAAAATCTCCA
CCGAAAAGCCAACATACTTCTTCATTGAGCATCACACTTTGGGAATTCAA
TTGAAAACCTTGGTACCACGTGACTTACCCACGATCCCCACTTTAGAAGA
GTTGAAGAAGCTTCAAAAACCAGTCATGGATTTGGTCATGCAATTCCAAT
CTCAACAATTGACAGATGAGATCATTCAAAGATTTGTCCTATGGAGAAAC
GTTGACCCACAAAAGGCTCTCCAAATCGTCTACGTTCGATTCTTGAACAA
CAAAGCTTCCATTGCACCCATCAAAGACACTGAATTGTCGATCCAAAAAC
AAATCATTGAATCTTCTACTGAACGAATCCGTTGTGAAGCAAGAAACCGT
GGAACCTGTTTGACCAAACAATCTCCAATCCTCCCAATCTGTATGTATGG
AGTCTTACCAAGACAAACTGTCCTGAATATCGATGCCCTCTTCATGCCAA
TGCTCTTTGAAGTTGCATTACCCGACCACTTGAAGAAAATCCACCTTGAA
CACACTTTGAAGACTGAAAACAAATTGGACATCAGCTTGACCAGAATTCA
ATTGATTGGAATGGAAAAAGAAATCAGACTTCGATTGGTTTTGGATGAAG
AGAGAATGCCACGTGAAATCACCATTGAACAATTTGCCAAAGGATTAACT
CAAGGAAATTTGGCTTGCTTACGACTTGCACCCACACCAAACTCATTCGA
ATTTTACATGAGCTTCGATCCTAAATGCATGATCAAACACGTTGAGATCA
CACCAGTAGCAATAACCAACAAATTGTGGCCACGATTACATATGGAATTC
AACTGGTTCGTCCGATTGGAGAAACTTCCATTACCCATCAGAAGAACTAT
CATCTCAATCTTGCAAACCATCTTCAATCCAGCAACCATCCATGGAATCG
AACGTCTTCCTTTGGAGATCACAACCAAAGAAATCTTCCCTGAATCAGAA
ATCACTAAAGGTACATTGTCCTTGAGAAAGCTTGGACCAGCATTGTTATC
CGTCAAATTAAACTCACCCTTCTTACCAGCATTCGAAATGGAAATTCCAA
TCTCAAAAAGAATCGAATCCTTACCAGGAATCTATGGTCCAAAAACTCTC
ACCAGATTCACTAAACTTGCAACAAGACGTGTCTGCACTCTCTTGAGAGA
CACGATGACtacttttgatgatgttgaTTATAAATTCACAATGCCAACAC
CAAAATGTGAACAAATTCTTGTTGaaacaacaaaagaattgaGAGGTGTC
AAAGTAACCACACAAAAAGCTGGACGATTCCAAATCCTTCGATTGAGAAT
TAATGATGTCATTGTTGAAGTTGTTCCTACCAAAGAAACTGTTATTCCAA
CCGTCAAGATCAACGGCAAAGAAACCGAAGTCAAACCTGACCAAAAAATA
ATCTTACCAAACAAACTTGTCATGATAGTACGATGGGTTGAAGACCTCAG
AGAATTCAGAATCGTGATTAATCATCTTATGATGGAATTGAGCATGAGAT
CAGGAAACATCATCTCTATTGCTATGGAACCAACTGTCTACATGGGACAA
GTTCACGGTATGTGCGGTCACATGGATATGGAGAAAAGCAAAGAAATGAT
GACACCTGAAAAAGTTGCTGTTACAGACCctgaattgtttattttgactt
gGTTGAACCCAGCTACCAAATGCACACAGAAAGAATGTCCAATGATCCGA
TCTGTCATTCCAACCGAAGCTGGATGTCGTCCAATCATGGCTTTGCCAAC
ATGCATGGAAAAATGTCAACCCATAAAAGAAGTTCTCATTAAAGAAGTTC
CAGTGAAATGCGCTCGTGGTGAACAAAAAATGCTTCCTATGAAAGTTCCA
ATTGAGTGTCAATGTACTTGCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043529XLOC_043529Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069894-exon-scaffold_511-1491911889:285053..285169TCONS_00069894-exon-scaffold_511-1491911889:285053..285169Clytia hemisphaericaexon
TCONS_00069894-exon-scaffold_511-1510915933:285053..285169TCONS_00069894-exon-scaffold_511-1510915933:285053..285169Clytia hemisphaericaexon
TCONS_00069894-exon-scaffold_511-1575043694:285053..285169TCONS_00069894-exon-scaffold_511-1575043694:285053..285169Clytia hemisphaericaexon
TCONS_00069894-exon-scaffold_511-1491911889:285699..286129TCONS_00069894-exon-scaffold_511-1491911889:285699..286129Clytia hemisphaericaexon
TCONS_00069894-exon-scaffold_511-1510915933:285699..286129TCONS_00069894-exon-scaffold_511-1510915933:285699..286129Clytia hemisphaericaexon
TCONS_00069894-exon-scaffold_511-1575043694:285699..286129TCONS_00069894-exon-scaffold_511-1575043694:285699..286129Clytia hemisphaericaexon
TCONS_00069894-exon-scaffold_511-1491911889:286285..286576TCONS_00069894-exon-scaffold_511-1491911889:286285..286576Clytia hemisphaericaexon
TCONS_00069894-exon-scaffold_511-1510915933:286285..286576TCONS_00069894-exon-scaffold_511-1510915933:286285..286576Clytia hemisphaericaexon
TCONS_00069894-exon-scaffold_511-1575043694:286285..286576TCONS_00069894-exon-scaffold_511-1575043694:286285..286576Clytia hemisphaericaexon
TCONS_00069894-exon-scaffold_511-1491911889:286957..287163TCONS_00069894-exon-scaffold_511-1491911889:286957..287163Clytia hemisphaericaexon
TCONS_00069894-exon-scaffold_511-1510915933:286957..287163TCONS_00069894-exon-scaffold_511-1510915933:286957..287163Clytia hemisphaericaexon
TCONS_00069894-exon-scaffold_511-1575043694:286957..287163TCONS_00069894-exon-scaffold_511-1575043694:286957..287163Clytia hemisphaericaexon
TCONS_00069894-exon-scaffold_511-1491911889:287382..287572TCONS_00069894-exon-scaffold_511-1491911889:287382..287572Clytia hemisphaericaexon
TCONS_00069894-exon-scaffold_511-1510915933:287382..287572TCONS_00069894-exon-scaffold_511-1510915933:287382..287572Clytia hemisphaericaexon
TCONS_00069894-exon-scaffold_511-1575043694:287382..287572TCONS_00069894-exon-scaffold_511-1575043694:287382..287572Clytia hemisphaericaexon
TCONS_00069894-exon-scaffold_511-1491911889:288128..288839TCONS_00069894-exon-scaffold_511-1491911889:288128..288839Clytia hemisphaericaexon
TCONS_00069894-exon-scaffold_511-1510915933:288128..288839TCONS_00069894-exon-scaffold_511-1510915933:288128..288839Clytia hemisphaericaexon
TCONS_00069894-exon-scaffold_511-1575043694:288128..288839TCONS_00069894-exon-scaffold_511-1575043694:288128..288839Clytia hemisphaericaexon
TCONS_00069894-exon-scaffold_511-1491911889:288962..289306TCONS_00069894-exon-scaffold_511-1491911889:288962..289306Clytia hemisphaericaexon
TCONS_00069894-exon-scaffold_511-1510915933:288962..289306TCONS_00069894-exon-scaffold_511-1510915933:288962..289306Clytia hemisphaericaexon
TCONS_00069894-exon-scaffold_511-1575043694:288962..289306TCONS_00069894-exon-scaffold_511-1575043694:288962..289306Clytia hemisphaericaexon
TCONS_00069894-exon-scaffold_511-1491911889:289458..289658TCONS_00069894-exon-scaffold_511-1491911889:289458..289658Clytia hemisphaericaexon
TCONS_00069894-exon-scaffold_511-1510915933:289458..289658TCONS_00069894-exon-scaffold_511-1510915933:289458..289658Clytia hemisphaericaexon
TCONS_00069894-exon-scaffold_511-1575043694:289458..289658TCONS_00069894-exon-scaffold_511-1575043694:289458..289658Clytia hemisphaericaexon
TCONS_00069894-exon-scaffold_511-1491911889:289894..290505TCONS_00069894-exon-scaffold_511-1491911889:289894..290505Clytia hemisphaericaexon
TCONS_00069894-exon-scaffold_511-1510915933:289894..290505TCONS_00069894-exon-scaffold_511-1510915933:289894..290505Clytia hemisphaericaexon
TCONS_00069894-exon-scaffold_511-1575043694:289894..290505TCONS_00069894-exon-scaffold_511-1575043694:289894..290505Clytia hemisphaericaexon
TCONS_00069894-exon-scaffold_511-1491911889:290656..290980TCONS_00069894-exon-scaffold_511-1491911889:290656..290980Clytia hemisphaericaexon
TCONS_00069894-exon-scaffold_511-1510915933:290656..290980TCONS_00069894-exon-scaffold_511-1510915933:290656..290980Clytia hemisphaericaexon
TCONS_00069894-exon-scaffold_511-1575043694:290656..290980TCONS_00069894-exon-scaffold_511-1575043694:290656..290980Clytia hemisphaericaexon
TCONS_00069894-exon-scaffold_511-1491911889:291226..291729TCONS_00069894-exon-scaffold_511-1491911889:291226..291729Clytia hemisphaericaexon
TCONS_00069894-exon-scaffold_511-1510915933:291226..291729TCONS_00069894-exon-scaffold_511-1510915933:291226..291729Clytia hemisphaericaexon
TCONS_00069894-exon-scaffold_511-1575043694:291226..291729TCONS_00069894-exon-scaffold_511-1575043694:291226..291729Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069894-proteinTCONS_00069894-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_511supercontigscaffold_511:285053..291729 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.38637	4.64007	12.9948	9.17136	1.43736	1.19667	0.831983	0.881981	0.425029	0.357601	0.366379	0.354927	0.221521	0.36151	0.0972687	0.243563	2.34325	1.36197	0.0809305	0.296408	74.0325	69.1376	3771.88	3970.73	74.3324	15.6298	1100.77	1435.5	33816.2	29748.9
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001846VWF_type-D
IPR015255Vitellinogen_open_b-sht
IPR011030Vitellinogen_superhlx
IPR015819Lipid_transp_b-sht_shell
Vocabulary: Molecular Function
TermDefinition
GO:0005319lipid transporter activity
Vocabulary: Biological Process
TermDefinition
GO:0006869lipid transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006869 lipid transport
molecular_function GO:0005319 lipid transporter activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069894 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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