TCONS_00069955 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069955
Unique NameTCONS_00069955
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1728

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069955 ID=TCONS_00069955|Name=TCONS_00069955|organism=Clytia hemisphaerica|type=transcript|length=1728bp
CTCCCACGCAATTTTTGATATATAATTCTACATTCAGCATAGTTTAGCAA
CCTTACACGAAAAGATTTTTTGAGAGATACTTTTGGAGACACAGTGTAAC
CGCATGGATTAAAGGAGGCGATGAGTCaaactttaattaaaaaattttca
taaaaaattatcgacTAAGGATATATAACTAGCGTTTGGATTGAGTTCCA
AAATTAGTATCGAGTCAACGCCTAAACAGGATGAAGGTGTTCAAATTTTG
CTGCCTTCTGGCAGTGATTGTTTTGACTGTAGCGAAACCCAATCAAGGAA
ATGACGATGAGAAGCGAGTCGATAAACTATTAGACGATATCAAAGAAGCT
GATACCTTGATCAAGAACgaaatcaaaactttgaaaggaATAAaaaaaga
aattgcGTCAGACAGCACCAAAAAACCTTGGACTACCGGAAGATCTTGGA
CCACTGGAAGACCTTGGACTACCGGAAGATCTTGGACCACCGGAAGATCT
TGGACCACCGGAAGACCTTGGACTACCAGAAGATCTTGGACTACCAGAAG
ACCTTGGACTACCGGAAAACCTTGGACTACTGGAAGATCTTGGACTACCG
GAAGATCTTGGACTACCGGAAGACCTTGGACTACCGGAAGATCTTGGACT
ACCGGAAGACCTTGGACTACCAGAAGATCTTGGACTACCGGAAGACCTTG
GACTACCGGAAGATCTTGGACCACCGGAAAACCTTGGACTACTGGAAGAT
CTTGGACTACCGGAAGACCTTGGACTACCAGAAGATCTTGGACTACCGGA
AGACCTTGGACTACCGGAAGATCTTGGACCACAGGAAAACCTTGGACTAC
TGGAAGACCTTGGACTACCGGAAGATCTTGGACTACTGGAAGACCTTGGA
CTACCGTAAGACCTTGGACCACCGGAAAACCTTGGACTACCGGAAGATAT
TGGACTACCGGAAGATCTTGGACTACCGGAAGACCTTGGACTACCAGAAG
ATCTTGGACTACCGGAAGACCTTGGACTCCCGGAAGATCTTGGACCACCG
GAAAACCTTGGACTACTGGAAGACCTTGGACTACCGGAAGATCTTGGACT
ACCGGAAGACCTTGGACTACCGTAAGACCTTGGATCACCGGAAAACCTTG
GACTATCGGAAGATATTGGACTACCGGAAGATCTTGGACTACCGGAAGAC
CTTGGACTACCGGAAGATCTTGGACCACCGGAAAACCTTGGACTACTGGA
AGACCTTGGACTACTGGAAGACCTTGGACTACCGGAAGATCTTGGACTAC
CGGAAGACCTTGGACTACCGGAAGATCTTGGACCACCGGAAAACCTTGGA
CTACTGGAAGATCTTGGACCACCGGAAAACCTTGGACTACTGGAAGACCT
TGGACTACCGGAAGATCTTGGACTACCGGAAGACCTTGGACTACCGGAAG
ACCTTGGACCACCAGGCGTTCCGGATGGTGGACCACACACCGCCCACGGC
GTATATTGAaggGAAAATTCATCTTCTACATCGACGACAAGAAACGAAAG
TAAAGACACTTCAAACAACTAATTTGTACCGTTTTTTATCAAATCAATTC
TTGGAAGTTGACCAAGATTAACTTTAGGTTTAGcaacgtttttttctatt
taattatttttctagTAATGTTTGAAACGAAAAATGGCaccctttgaaaa
tattttgattcatCATTGCTTGCCATTC
Run BLAST on NCBI

protein sequence of TCONS_00069955-protein

>TCONS_00069955-protein ID=TCONS_00069955-protein|Name=TCONS_00069955-protein|organism=Clytia hemisphaerica|type=polypeptide|length=440bp
MKVFKFCCLLAVIVLTVAKPNQGNDDEKRVDKLLDDIKEADTLIKNEIKT
LKGIKKEIASDSTKKPWTTGRSWTTGRPWTTGRSWTTGRSWTTGRPWTTR
RSWTTRRPWTTGKPWTTGRSWTTGRSWTTGRPWTTGRSWTTGRPWTTRRS
WTTGRPWTTGRSWTTGKPWTTGRSWTTGRPWTTRRSWTTGRPWTTGRSWT
TGKPWTTGRPWTTGRSWTTGRPWTTVRPWTTGKPWTTGRYWTTGRSWTTG
RPWTTRRSWTTGRPWTPGRSWTTGKPWTTGRPWTTGRSWTTGRPWTTVRP
WITGKPWTIGRYWTTGRSWTTGRPWTTGRSWTTGKPWTTGRPWTTGRPWT
TGRSWTTGRPWTTGRSWTTGKPWTTGRSWTTGKPWTTGRPWTTGRSWTTG
RPWTTGRPWTTRRSGWWTTHRPRRILKGKFIFYIDDKKRK
Run BLAST on NCBI

transcript from alignment at scaffold_511:161012..163554-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069955 ID=TCONS_00069955|Name=TCONS_00069955|organism=Clytia hemisphaerica|type=transcript|length=2543bp|location=Sequence derived from alignment at scaffold_511:161012..163554- (Clytia hemisphaerica)
CTCCCACGCAATTTTTGATATATAATTCTACATTCAGCATAGTTTAGCAA
CCTTACACGAAAAGATTTTTTGAGAGATACTTTTGGAGACACAGTGTAAC
CGCATGGATTAAAGGAGGCGATGAGTCAAACTTTAATTAAAAAATTTTCA
TAAAAAATTATCGACTAAGGATATATAACTAGCGTTTGGATTGAGTTCCA
AAATTAGTATCGAGTCAACGCCTAAACAGGATGAAGGTGTTCAAATTTTG
CTGCCTTCTGGCAGTGATTGTTTTGACTGTAGGTAAGAAATTTTTCATAC
TTTTTTTACTAAAGAAATGGATGAACCCAGGGTCTACCATGATAAGTTTA
ACTGGAAATTTCACTCACTTGGAAACTACTTCTCATCTACACTGGAAAGG
AACTTTTAACATCACCCATATTATATCGTGTAGTGTTTTCCCTTGTGGAA
AAAGACTATACCCAGTCAATATTCATATGCTAAATAAATTGTACATTTTT
CTGTGTCTGTCATTTTCAGCGAAACCCAATCAAGGAAATGACGATGAGAA
GCGAGTCGATAAACTATTAGACGATATCAAAGAAGCTGATACCTTGATCA
AGAACGAAATCAAAACTTTGAAAGGAATAAGTAAATATATTTTGTAAACA
AAGTATTGGACTTCAAAAATCTCATCAAAAGTTTTAAACATTCTCATATA
AACATGCACCAGTAAAACTCAAAACTTTTTGTAAAAATGTAAAAATTCAA
GTTTCATGCTAACAATCATCAGCTACACACTAAGGAGATAAATATTTGAA
AACTTATACTTAAGCTTAAACTTGTACTTTTAGAACTTACTAATAGTGCA
GCCCCAATCTTTTAGTCACCAGANACTTAAGCTTAAACTTTTACTTTTAG
AACTTACTAATAGTGCAGCCCCAATCTTTTAGTCACCAGAACTCTATCAA
ATTAAACTGTAAGTTTATTGTGAATCACAAATTGCTAAGGGGTACCATTT
TGCAGTTTGTTGACTCTTTTAAGTAGTATTTTTGATTGATTTTTCGCTTT
TAGAAAAAGAAATTGCGTCAGACAGCACCAAAAAACCTTGGACTACCGGA
AGATCTTGGACCACTGGAAGACCTTGGACTACCGGAAGATCTTGGACCAC
CGGAAGATCTTGGACCACCGGAAGACCTTGGACTACCAGAAGATCTTGGA
CTACCAGAAGACCTTGGACTACCGGAAAACCTTGGACTACTGGAAGATCT
TGGACTACCGGAAGATCTTGGACTACCGGAAGACCTTGGACTACCGGAAG
ATCTTGGACTACCGGAAGACCTTGGACTACCAGAAGATCTTGGACTACCG
GAAGACCTTGGACTACCGGAAGATCTTGGACCACCGGAAAACCTTGGACT
ACTGGAAGATCTTGGACTACCGGAAGACCTTGGACTACCAGAAGATCTTG
GACTACCGGAAGACCTTGGACTACCGGAAGATCTTGGACCACAGGAAAAC
CTTGGACTACTGGAAGACCTTGGACTACCGGAAGATCTTGGACTACTGGA
AGACCTTGGACTACCGTAAGACCTTGGACCACCGGAAAACCTTGGACTAC
CGGAAGATATTGGACTACCGGAAGATCTTGGACTACCGGAAGACCTTGGA
CTACCAGAAGATCTTGGACTACCGGAAGACCTTGGACTCCCGGAAGATCT
TGGACCACCGGAAAACCTTGGACTACTGGAAGACCTTGGACTACCGGAAG
ATCTTGGACTACCGGAAGACCTTGGACTACCGTAAGACCTTGGATCACCG
GAAAACCTTGGACTATCGGAAGATATTGGACTACCGGAAGATCTTGGACT
ACCGGAAGACCTTGGACTACCGGAAGATCTTGGACCACCGGAAAACCTTG
GACTACTGGAAGACCTTGGACTACTGGAAGACCTTGGACTACCGGAAGAT
CTTGGACTACCGGAAGACCTTGGACTACCGGAAGATCTTGGACCACCGGA
AAACCTTGGACTACTGGAAGATCTTGGACCACCGGAAAACCTTGGACTAC
TGGAAGACCTTGGACTACCGGAAGATCTTGGACTACCGGAAGACCTTGGA
CTACCGGAAGACCTTGGACCACCAGGCGTTCCGGATGGTGGACCACACAC
CGCCCACGGCGTATATTGAAGTAAGAAATTTAAAAAATAATCCAATATTC
CCAAATTTATGTCCTCAATAGTGATTTAAGATATTTTTATCCCAAAATGG
GTTGTATTTGAAAATATACCATGTAATTTGATAAACCTTTGAAGCTAAAA
GATCATTAAAATATTTCTTTTTTAGGGGAAAATTCATCTTCTACATCGAC
GACAAGAAACGAAAGTAAAGACACTTCAAACAACTAATTTGTACCGTTTT
TTATCAAATCAATTCTTGGAAGTTGACCAAGATTAACTTTAGGTTTAGCA
ACGTTTTTTTCTATTTAATTATTTTTCTAGTAATGTTTGAAACGAAAAAT
GGCACCCTTTGAAAATATTTTGATTCATCATTGCTTGCCATTC

Coding sequence (CDS) from alignment at scaffold_511:161012..163554-

>TCONS_00069955 ID=TCONS_00069955|Name=TCONS_00069955|organism=Clytia hemisphaerica|type=CDS|length=1323bp|location=Sequence derived from alignment at scaffold_511:161012..163554- (Clytia hemisphaerica)
ATGAAGGTGTTCAAATTTTGCTGCCTTCTGGCAGTGATTGTTTTGACTGT
AGCGAAACCCAATCAAGGAAATGACGATGAGAAGCGAGTCGATAAACTAT
TAGACGATATCAAAGAAGCTGATACCTTGATCAAGAACGAAATCAAAACT
TTGAAAGGAATAAAAAAAGAAATTGCGTCAGACAGCACCAAAAAACCTTG
GACTACCGGAAGATCTTGGACCACTGGAAGACCTTGGACTACCGGAAGAT
CTTGGACCACCGGAAGATCTTGGACCACCGGAAGACCTTGGACTACCAGA
AGATCTTGGACTACCAGAAGACCTTGGACTACCGGAAAACCTTGGACTAC
TGGAAGATCTTGGACTACCGGAAGATCTTGGACTACCGGAAGACCTTGGA
CTACCGGAAGATCTTGGACTACCGGAAGACCTTGGACTACCAGAAGATCT
TGGACTACCGGAAGACCTTGGACTACCGGAAGATCTTGGACCACCGGAAA
ACCTTGGACTACTGGAAGATCTTGGACTACCGGAAGACCTTGGACTACCA
GAAGATCTTGGACTACCGGAAGACCTTGGACTACCGGAAGATCTTGGACC
ACAGGAAAACCTTGGACTACTGGAAGACCTTGGACTACCGGAAGATCTTG
GACTACTGGAAGACCTTGGACTACCGTAAGACCTTGGACCACCGGAAAAC
CTTGGACTACCGGAAGATATTGGACTACCGGAAGATCTTGGACTACCGGA
AGACCTTGGACTACCAGAAGATCTTGGACTACCGGAAGACCTTGGACTCC
CGGAAGATCTTGGACCACCGGAAAACCTTGGACTACTGGAAGACCTTGGA
CTACCGGAAGATCTTGGACTACCGGAAGACCTTGGACTACCGTAAGACCT
TGGATCACCGGAAAACCTTGGACTATCGGAAGATATTGGACTACCGGAAG
ATCTTGGACTACCGGAAGACCTTGGACTACCGGAAGATCTTGGACCACCG
GAAAACCTTGGACTACTGGAAGACCTTGGACTACTGGAAGACCTTGGACT
ACCGGAAGATCTTGGACTACCGGAAGACCTTGGACTACCGGAAGATCTTG
GACCACCGGAAAACCTTGGACTACTGGAAGATCTTGGACCACCGGAAAAC
CTTGGACTACTGGAAGACCTTGGACTACCGGAAGATCTTGGACTACCGGA
AGACCTTGGACTACCGGAAGACCTTGGACCACCAGGCGTTCCGGATGGTG
GACCACACACCGCCCACGGCGTATATTGAAGGGAAAATTCATCTTCTACA
TCGACGACAAGAAACGAAAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043544XLOC_043544Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069955-exon-scaffold_511-1575043694:163273..163554TCONS_00069955-exon-scaffold_511-1575043694:163273..163554Clytia hemisphaericaexon
TCONS_00069955-exon-scaffold_511-1575043694:162925..163035TCONS_00069955-exon-scaffold_511-1575043694:162925..163035Clytia hemisphaericaexon
TCONS_00069955-exon-scaffold_511-1575043694:161385..162501TCONS_00069955-exon-scaffold_511-1575043694:161385..162501Clytia hemisphaericaexon
TCONS_00069955-exon-scaffold_511-1575043694:161012..161229TCONS_00069955-exon-scaffold_511-1575043694:161012..161229Clytia hemisphaericaexon
TCONS_00069955-exon-scaffold_511-1510915933:163273..163554TCONS_00069955-exon-scaffold_511-1510915933:163273..163554Clytia hemisphaericaexon
TCONS_00069955-exon-scaffold_511-1510915933:162925..163035TCONS_00069955-exon-scaffold_511-1510915933:162925..163035Clytia hemisphaericaexon
TCONS_00069955-exon-scaffold_511-1510915933:161385..162501TCONS_00069955-exon-scaffold_511-1510915933:161385..162501Clytia hemisphaericaexon
TCONS_00069955-exon-scaffold_511-1510915933:161012..161229TCONS_00069955-exon-scaffold_511-1510915933:161012..161229Clytia hemisphaericaexon
TCONS_00069955-exon-scaffold_511-1491911889:163273..163554TCONS_00069955-exon-scaffold_511-1491911889:163273..163554Clytia hemisphaericaexon
TCONS_00069955-exon-scaffold_511-1491911889:162925..163035TCONS_00069955-exon-scaffold_511-1491911889:162925..163035Clytia hemisphaericaexon
TCONS_00069955-exon-scaffold_511-1491911889:161385..162501TCONS_00069955-exon-scaffold_511-1491911889:161385..162501Clytia hemisphaericaexon
TCONS_00069955-exon-scaffold_511-1491911889:161012..161229TCONS_00069955-exon-scaffold_511-1491911889:161012..161229Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069955-proteinTCONS_00069955-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_511supercontigscaffold_511:161012..163554 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.070068	0	0.0264448	0.0258722	0.0314969	0	0	0	0.0590449	0.0243789	0	0	0.497067	0.32263	0.0132623	0.199255	928.561	1009.85	0.620698	0.727458	614.724	572.619	89.6043	92.9792	162.093	158.182	0.320257	0.136715	0.0259233	0.105647
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069955 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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