|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069970 ID=TCONS_00069970|Name=TCONS_00069970|organism=Clytia hemisphaerica|type=transcript|length=1598bp
TCCCTTTGTTATCAAATTACGAGCTGACAAAGATTTGCAGTATTTAGTAG
TGACACATGTCTCAGATAAGCACGAAAATCACTTAGTTGATGAAAATCTC
TTCAAACATCTTCCCAGTGAAAGACAGTTACCTAGTGATTTGGAGAAAGA
CACTATAgagtttttgaaattgaaaccaAACAAGAAACTTGTCCAGCAAG
ATCTTCAAATTAAAAGTGGAAAAGTTGTTTATATGAGAGACGTTCACAAT
CTAGCGCAGAAAGCTAAATCAAATAAAACTAGAAACGAGCTTCCTGAAGT
TGTAAACATTCTAATAGAAGAATTTGGTTGTACCGTCAATATCAACAAAG
ATGACGAGGACACACTTTTAGGGCTGTTCTTTCAGGACGAGTCCATGAAG
ATTAATTTTGAAGCGTATTCTGAAGTATTGTTTATAGATGCCACGTACAA
GGTTAATGAATTAAGAATTCCGGCATACATTCTTTTAGTCGAAGATTCTT
TAGGTCTAAGTGAAGTCGTTGGTGTGGCACTTTTGGTTaacgaaacaaaa
caaaatgtcacCTGGTTAATTGAGACTTTTGCTGCGCTCAACAATAGTGA
AAAACTTAGAGTTGTTATGGCAGATAAGGACATCAACGAACGGAAAAGAA
TTTCTGAAATTCTTGGTGTCCCTATCCTTATCTGCCTTTTTCACGCATTG
AAAGCATTTAGACGTGAAATGGGTATTTTGGAGATCAATAAAGATCTAAA
GACCAAAGCGAAAGAACTGTTCGAAAAAATGTGTTACGCTTATACTGAAG
AGAACTTCAAATTGTACGAGTCTCAATTTTTAGGACTAGACACAGAAAGT
TCCCCTTTGATAACCTATTATGTGAAGAATTGGCAACCATTCACAAAAGA
TTGggttaagtgttttaaagcccAAAGTGGCAATTTTCTGAACTCGACCA
ATAACAGACttgaaagttttaattcaaAACTCAAATCGGTCATAGGTTTA
CATTGTTCCCTGGAAGAATTTATCCGTGGTTTCTTTTCTGTTCTGAGCAC
TTTAAGAACTGAAAGGGATGCCATTGTAGCCAAAGAGTTTCAGAAAGTGA
AGGTTATTGTAAGTGAAAACCCAATCATTATTACGATAAAAGAATATTTG
ACCTCATTTGCTGCGAAATTTGTATGTGAAGAATTTAACAGCTTCACTAA
AACAACTATTCGAAGCTACCACCATACCACTACCACTACCTGCAGCTGTC
CTTTTGCATCGTCAATGAGACTGCCTTGCAGACACATATTTCTTTCGCGT
TTTGAGACTAACTGCCAGTTCTTATTCGTGGAGGAGCTCTGTATCAAAAG
ATGGTCCAAAAGCTATTGTTTGGAAACCCAGCGTTTGTTCAAGAAATCAA
ATGGTTCAAATGGTTATGGGGCACCGATCAACACCACAACCAGACGACCA
GAAAAAGCCTTGAACCAAGCTGAAAGATTCAACAAAGCTCTGGGGATCTG
CAAACAACTTTCGTCGCTTGTTGCAGAACATGGTGGTGAAACTTTTGTAT
CGCGAATAAAGACTCTTACATGTCTTCAATCCATTTGGGAAAGAGGAG Run BLAST on NCBI protein sequence of TCONS_00069970-protein >TCONS_00069970-protein ID=TCONS_00069970-protein|Name=TCONS_00069970-protein|organism=Clytia hemisphaerica|type=polypeptide|length=532bp
PFVIKLRADKDLQYLVVTHVSDKHENHLVDENLFKHLPSERQLPSDLEKD
TIEFLKLKPNKKLVQQDLQIKSGKVVYMRDVHNLAQKAKSNKTRNELPEV
VNILIEEFGCTVNINKDDEDTLLGLFFQDESMKINFEAYSEVLFIDATYK
VNELRIPAYILLVEDSLGLSEVVGVALLVNETKQNVTWLIETFAALNNSE
KLRVVMADKDINERKRISEILGVPILICLFHALKAFRREMGILEINKDLK
TKAKELFEKMCYAYTEENFKLYESQFLGLDTESSPLITYYVKNWQPFTKD
WVKCFKAQSGNFLNSTNNRLESFNSKLKSVIGLHCSLEEFIRGFFSVLST
LRTERDAIVAKEFQKVKVIVSENPIIITIKEYLTSFAAKFVCEEFNSFTK
TTIRSYHHTTTTTCSCPFASSMRLPCRHIFLSRFETNCQFLFVEELCIKR
WSKSYCLETQRLFKKSNGSNGYGAPINTTTRRPEKALNQAERFNKALGIC
KQLSSLVAEHGGETFVSRIKTLTCLQSIWERG Run BLAST on NCBI transcript from alignment at scaffold_511:524138..527782- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069970 ID=TCONS_00069970|Name=TCONS_00069970|organism=Clytia hemisphaerica|type=transcript|length=3645bp|location=Sequence derived from alignment at scaffold_511:524138..527782- (Clytia hemisphaerica)
TCCCTTTGTTATCAAATTACGAGCTGACAAAGATTTGCAGTATTTAGTAG
TGACACATGTCTCAGATAAGCACGAAAATCACTTAGTTGATGAAGTAAGA
TCATTATTTTTCGAATCTGTGTCATTTGTGTAAAGGTTGACATAAGAGTC
TTTAATAAGAGTGGTATCTTTTCAGATCTTTTAGCTATTTAGCCAAAATT
ATGCTTTTTGAAATTTTTTGCAATTCTTATATAAAATATCATTTTAAATG
TTATTTCTATTTAGAATCTCTTCAAACATCTTCCCAGTGAAAGACAGTTA
CCTAGTGATTTGGAGAAAGACACTATAGAGTTTTTGAAATTGAAACCAAA
CAAGAAACTTGTCCAGCAAGATCTTCAAATTAAAAGTGGAAAAGTTGTTT
ATATGAGAGACGTTCACAATCTAGCGCAGAAAGCTAAATCAAATAAAACT
AGAAACGAGCTTCCTGAAGTTGTAAACATTCTAATAGAAGAATTTGGTAA
GTAGTTGTAGATTTTCCTTAAAACTCAGCGGGAGGAGTTATAGGTCTTGG
AATAAGACCACGAGTGTTGTGGCTTGAAAATTTTAAACAATTAGGCCAAA
AACAGGCTTTTCTCAGTACAGTAGAAGATATTTGTAGGCAAAATATCTCC
TTTAACCCTTAAGACATACTAACGGGTGCTTCAAAAAAAAAAACTGGAAC
AAATTTGAATCAAAATTCTGAAAAAACTATAATTGGGTAAAGGCCACATT
TTTGGTACACCTGTCCCTTCCATTACATCAAAAAATTTTCATCCCCAAAA
AGCTTCATATTTTTTCTGACTCAACAATACCTATGGCATGAAAATAAACT
TTGTGCCCCTCAAAATTTTAGGTTGGAAATCTTTTTCAGCCTCAATGTGT
CATACGCTTGCACTTTTAACTTATTTTAGAAATCAGTTGGTAGCATTTTT
TAAACTGGTTTCCATTCCTTTAACTTGGTATGCACCATTTTGCGTAACGG
AAGGGACAAACCCTAGTCATGACATCAAATTCTTTATATTTTTCCCACTA
TACTAGTGATAATCAGCATTATCATCATGCAGAACTTTTGTTTTTATCTT
ATTGGGAGAGTTGGCTTAGGCAGTGTTTTTATTATAGCTGCTTGTATTTG
TCAAATGAGGCATTCTTTCAAAAGCGTAACAGAAAGAGCATAAAGTATCC
GATTTTCAGAAACTTGAAATTAAAATTATCAAAATCACTGACACTATTCT
CAAAGATAAGTAAATGTTTTTGTTTCAATTTGGGTAAATGAATCTACCTG
AGCCTTCTTAGAGAAATTAGTATCAAAGTTTCCAGCTTTTTCTTTGAAAT
AATTTGATCAAAATCAGGAGTTTTTGTTCAAAATCACGAGTTTTTGTTCA
AAATTTATTTTCAGATTTAAACTCTTCACCAATGGAAAAGAGGAAGGCCA
ACTTAAATTCTGAGTTATCTTACTTTAAATTTGCTATATTTAAAAAAATA
AGTACTCAAAATTTTTCTTTTAAAAAAACGTCAATTTTGAGAAAAGGAGG
GGGGGGTCAAATTTGTCTTTTCAACAAAATTCGAGAGCATTTTGAATGTT
TTGATGATTTATAGAAAAATAAAAGACAAATGATGCTGTATCATCATAGT
ACAATATTGTATGAGAAATACACGAGTATCATTAAAAAACTAGGTAAAGA
GGGAATAAGTTTTCCTATTGAAAAATTCAAACAGTTGCCTCTAATCTCTT
AACTAAATCTAGTTTGTGACTAATGTCCTGTTTACTACCAGAAAAAAAAA
GCTTTGAAATGATTTGGTTCATTTTGGGTAATTTTAGCCTCAATTTGTTT
ACAATAGGGTGTTAGAAACTCATCATTTTGAAAAAAAGTAATCTTATGAA
AATTTTAAACTAGGAAGGTTGATTTTCGTGACGGTCCCCTCCTTTTTTGG
GAAAAATTTAGGGTGTAACCCCCCCTCCCCAACCAGCAGGGGGGGGCTGA
CGCTATGAAATTTATCTTGTTTCTGAATTTGAAATTTTGACTTATATGTT
AGTTTTCTCATGGAATTCATGATTCAAACTTGTTCCGTTTATTTTTTTGA
AACACCCAGTAGAAAATGTTAGAAACCTTTTGAACTCGATGTGCTTTTAT
CCAACATAGGTTTGTTTACTCCTCCAATCAAAGGGGGTGTTTTTAAAGAT
CTTATCCTATCTTGACCTGATATTACGATTCATATCTTGACCTGCTATGC
CTATGAAATATAGTGGCTAATTTTAGGTACAAGATGTGCATTTCACTCAT
TATAAAAATAGAACCAAATTTTTGTGCACTGTAACGATTTTCAAAGCACT
GATAATTAAATTATTTTTCCCAGGTTGTACCGTCAATATCAACAAAGATG
ACGAGGACACACTTTTAGGGCTGTTCTTTCAGGACGAGTCCATGAAGATT
AATTTTGAAGCGTATTCTGAAGTATTGTTTATAGATGCCACGTACAAGGT
TAATGAATTAAGAATTCCGGCATACATTCTTTTAGTCGAAGATTCTTTAG
GTCTAAGTGAAGTCGTTGGTGTGGCACTTTTGGTTAACGAAACAAAACAA
AATGTCACCTGGTTAATTGAGACTTTTGCTGCGCTCAACAATAGTGAAAA
ACTTAGAGTTGTTATGGCAGATAAGGACATCAACGAACGGAAAAGAATTT
CTGAAATTCTTGGTGTCCCTATCCTTATCTGCCTTTTTCACGCATTGAAA
GCATTTAGACGTGAAATGGGTATTTTGGAGATCAATAAAGATCTAAAGAC
CAAAGCGAAAGAACTGTTCGAAAAAATGTGTTACGCTTATACTGAAGAGA
ACTTCAAATTGTACGAGTCTCAATTTTTAGGACTAGACACAGAAAGTTCC
CCTTTGATAACCTATTATGTGAAGAATTGGCAACCATTCACAAAAGATTG
GGTTAAGTGTTTTAAAGCCCAAAGTGGCAATTTTCTGAACTCGACCAATA
ACAGACTTGAAAGTTTTAATTCAAAACTCAAATCGGTCATAGGTTTACAT
TGTTCCCTGGAAGAATTTATCCGTGGTTTCTTTTCTGTTCTGAGCACTTT
AAGAACTGAAAGGGATGCCATTGTAGCCAAAGAGTTTCAGAAAGTGAAGG
TTATTGTAAGTGAAAACCCAATCATTATTACGATAAAAGAATATTTGACC
TCATTTGCTGCGAAATTTGTATGTGAAGAATTTAACAGCTTCACTAAAAC
AACTATTCGAAGCTACCACCATACCACTACCACTACCTGCAGCTGTCCTT
TTGCATCGTCAATGAGACTGCCTTGCAGACACATATTTCTTTCGCGTTTT
GAGACTAACTGCCAGTTCTTATTCGTGGAGGAGCTCTGTATCAAAAGATG
GTCCAAAAGCTATTGTTTGGAAACCCAGCGTTTGTTCAAGAAATCAAATG
GTTCAAATGGTTATGGGGCACCGATCAACACCACAACCAGACGACCAGAA
AAAGCCTTGAACCAAGCTGAAAGATTCAACAAAGCTCTGGGGATCTGCAA
ACAACTTTCGTCGCTTGTTGCAGAACATGGTGGTGAAACTTTTGTATCGC
GAATAAAGACTCTTACATGTCTTCAATCCATTTGGGAAAGAGGAG Coding sequence (CDS) from alignment at scaffold_511:524138..527782- >TCONS_00069970 ID=TCONS_00069970|Name=TCONS_00069970|organism=Clytia hemisphaerica|type=CDS|length=1596bp|location=Sequence derived from alignment at scaffold_511:524138..527782- (Clytia hemisphaerica)
CCCTTTGTTATCAAATTACGAGCTGACAAAGATTTGCAGTATTTAGTAGT
GACACATGTCTCAGATAAGCACGAAAATCACTTAGTTGATGAAAATCTCT
TCAAACATCTTCCCAGTGAAAGACAGTTACCTAGTGATTTGGAGAAAGAC
ACTATAGAGTTTTTGAAATTGAAACCAAACAAGAAACTTGTCCAGCAAGA
TCTTCAAATTAAAAGTGGAAAAGTTGTTTATATGAGAGACGTTCACAATC
TAGCGCAGAAAGCTAAATCAAATAAAACTAGAAACGAGCTTCCTGAAGTT
GTAAACATTCTAATAGAAGAATTTGGTTGTACCGTCAATATCAACAAAGA
TGACGAGGACACACTTTTAGGGCTGTTCTTTCAGGACGAGTCCATGAAGA
TTAATTTTGAAGCGTATTCTGAAGTATTGTTTATAGATGCCACGTACAAG
GTTAATGAATTAAGAATTCCGGCATACATTCTTTTAGTCGAAGATTCTTT
AGGTCTAAGTGAAGTCGTTGGTGTGGCACTTTTGGTTAACGAAACAAAAC
AAAATGTCACCTGGTTAATTGAGACTTTTGCTGCGCTCAACAATAGTGAA
AAACTTAGAGTTGTTATGGCAGATAAGGACATCAACGAACGGAAAAGAAT
TTCTGAAATTCTTGGTGTCCCTATCCTTATCTGCCTTTTTCACGCATTGA
AAGCATTTAGACGTGAAATGGGTATTTTGGAGATCAATAAAGATCTAAAG
ACCAAAGCGAAAGAACTGTTCGAAAAAATGTGTTACGCTTATACTGAAGA
GAACTTCAAATTGTACGAGTCTCAATTTTTAGGACTAGACACAGAAAGTT
CCCCTTTGATAACCTATTATGTGAAGAATTGGCAACCATTCACAAAAGAT
TGGGTTAAGTGTTTTAAAGCCCAAAGTGGCAATTTTCTGAACTCGACCAA
TAACAGACTTGAAAGTTTTAATTCAAAACTCAAATCGGTCATAGGTTTAC
ATTGTTCCCTGGAAGAATTTATCCGTGGTTTCTTTTCTGTTCTGAGCACT
TTAAGAACTGAAAGGGATGCCATTGTAGCCAAAGAGTTTCAGAAAGTGAA
GGTTATTGTAAGTGAAAACCCAATCATTATTACGATAAAAGAATATTTGA
CCTCATTTGCTGCGAAATTTGTATGTGAAGAATTTAACAGCTTCACTAAA
ACAACTATTCGAAGCTACCACCATACCACTACCACTACCTGCAGCTGTCC
TTTTGCATCGTCAATGAGACTGCCTTGCAGACACATATTTCTTTCGCGTT
TTGAGACTAACTGCCAGTTCTTATTCGTGGAGGAGCTCTGTATCAAAAGA
TGGTCCAAAAGCTATTGTTTGGAAACCCAGCGTTTGTTCAAGAAATCAAA
TGGTTCAAATGGTTATGGGGCACCGATCAACACCACAACCAGACGACCAG
AAAAAGCCTTGAACCAAGCTGAAAGATTCAACAAAGCTCTGGGGATCTGC
AAACAACTTTCGTCGCTTGTTGCAGAACATGGTGGTGAAACTTTTGTATC
GCGAATAAAGACTCTTACATGTCTTCAATCCATTTGGGAAAGAGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069970-exon-scaffold_511-1575043694:527689..527782 | TCONS_00069970-exon-scaffold_511-1575043694:527689..527782 | Clytia hemisphaerica | exon |
| TCONS_00069970-exon-scaffold_511-1575043694:527287..527518 | TCONS_00069970-exon-scaffold_511-1575043694:527287..527518 | Clytia hemisphaerica | exon |
| TCONS_00069970-exon-scaffold_511-1575043694:524138..525409 | TCONS_00069970-exon-scaffold_511-1575043694:524138..525409 | Clytia hemisphaerica | exon |
| TCONS_00069970-exon-scaffold_511-1510915933:527689..527782 | TCONS_00069970-exon-scaffold_511-1510915933:527689..527782 | Clytia hemisphaerica | exon |
| TCONS_00069970-exon-scaffold_511-1510915933:527287..527518 | TCONS_00069970-exon-scaffold_511-1510915933:527287..527518 | Clytia hemisphaerica | exon |
| TCONS_00069970-exon-scaffold_511-1510915933:524138..525409 | TCONS_00069970-exon-scaffold_511-1510915933:524138..525409 | Clytia hemisphaerica | exon |
| TCONS_00069970-exon-scaffold_511-1491911889:527689..527782 | TCONS_00069970-exon-scaffold_511-1491911889:527689..527782 | Clytia hemisphaerica | exon |
| TCONS_00069970-exon-scaffold_511-1491911889:527287..527518 | TCONS_00069970-exon-scaffold_511-1491911889:527287..527518 | Clytia hemisphaerica | exon |
| TCONS_00069970-exon-scaffold_511-1491911889:524138..525409 | TCONS_00069970-exon-scaffold_511-1491911889:524138..525409 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_511 | supercontig | scaffold_511:524138..527782 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
|
