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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070026 ID=TCONS_00070026|Name=TCONS_00070026|organism=Clytia hemisphaerica|type=transcript|length=1838bpRun BLAST on NCBI protein sequence of TCONS_00070026-protein >TCONS_00070026-protein ID=TCONS_00070026-protein|Name=TCONS_00070026-protein|organism=Clytia hemisphaerica|type=polypeptide|length=612bp KDLCFGVVGDIGGMPKPPFQTTAQKKVANLLAKVIEQNNCQFIVGVGDNFRun BLAST on NCBI transcript from alignment at scaffold_512:282337..293060+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070026 ID=TCONS_00070026|Name=TCONS_00070026|organism=Clytia hemisphaerica|type=transcript|length=10724bp|location=Sequence derived from alignment at scaffold_512:282337..293060+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_512:282337..293060+ >TCONS_00070026 ID=TCONS_00070026|Name=TCONS_00070026|organism=Clytia hemisphaerica|type=CDS|length=1836bp|location=Sequence derived from alignment at scaffold_512:282337..293060+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00070026 vs. Swiss-Prot (Human)
Match: PPA5 (Tartrate-resistant acid phosphatase type 5 OS=Homo sapiens GN=ACP5 PE=1 SV=3) HSP 1 Score: 239.195 bits (609), Expect = 1.715e-72 Identity = 121/291 (41.58%), Postives = 175/291 (60.14%), Query Frame = 1
Query: 7 LCFGVVGDIGGMPKPPFQTTAQKKVANLLAKVIEQNNCQFIVGVGDNFYFNGVKNVEDPRFFWTYERTYSHSAL-KIPWYMIAGNHDHAANVSAQIAYSKVSKRWHFPDFFYNKVFKIPDSTKTLELLMIDTTMLCWHSKKSNSPSP---------KVQWKWIEDALKNSKADYLVVAGHHPMYSSSNHGNTRCLVDRLKPLFEKYSVNAYFSGHDHNLQHIHETDSEVHYFISGSGNFVDQRFNNRHNLPLGSSKFEYAEN---CGFNLVHITKDNMKLKTFTVEPGRDL 840
L F VGD GG+P PF T + A +A+ ++ FI+ +GDNFYF GV+++ D RF T+E +S +L K+PWY++AGNHDH NVSAQIAYSK+SKRW+FP FY FKIP + ++ + M+DT LC +S S P + Q W++ L ++ DY++VAGH+P++S + HG T CLV +L+PL Y V AY GHDHNLQ++ + ++ V Y +SG+GNF+D ++ +P G +F Y GF V I+ M + T+ G+ L
Sbjct: 26 LRFVAVGDWGGVPNAPFHTAREMANAKEIARTVQILGADFILSLGDNFYFTGVQDINDKRFQETFEDVFSDRSLRKVPWYVLAGNHDHLGNVSAQIAYSKISKRWNFPSPFYRLHFKIPQTNVSVAIFMLDTVTLCGNSDDFLSQQPERPRDVKLARTQLSWLKKQLAAAREDYVLVAGHYPVWSIAEHGPTHCLVKQLRPLLATYGVTAYLCGHDHNLQYLQD-ENGVGYVLSGAGNFMDPSKRHQRKVPNGYLRFHYGTEDSLGGFAYVEISSKEMTV-TYIEASGKSL 314 The following BLAST results are available for this feature:
BLAST of TCONS_00070026 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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