TCONS_00070082 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070082
Unique NameTCONS_00070082
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2026

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070082 ID=TCONS_00070082|Name=TCONS_00070082|organism=Clytia hemisphaerica|type=transcript|length=2026bp
tttagaatttcacaatcattgaaatctcaggtggaaaataaaaacaaaat
acaaaatggcTTCTGAAACAATAACAGATATGAAGGGCAATATTGTCAAA
ATGGAAGTGGATTACAGTGAAACTTGCGACAAGAAACTTCCTGAACTTGA
AGAAATGGCTAAGagCGGTAAAATTGAAGATGCATTGGAAGCTTTATTAG
CTCTTGAAAAACAAACAAGAACGGCAGCTGATATGTTTTCCACAAGTCGT
GTTCTAGTTACTGTCATCAAGATTTGTTTTGCCACAAAGAATATCGAACT
ACTCAATGAACATCTGTTGTTATTGACAAAACGAAGAGGACAACTCAAGC
AGGCTGTGACAAAAATGGTACAAGAAGCATGCACGTATGTTGATCAAATC
GAAAAGAAAGAGGACCAATTAGAATTTATTGACACACTTCGTACAGTCAC
GTCCGGAAAGATTTATTTGGAGTTGGAGCGTGCAAGGATAACTCGTAAAT
tggctcaaatgaaagaggCTGACGGAAATATTGCAGATGCGGCAACGGTA
CTCCAAGAATTACAAGTGGAAACATTCGGCTCGATGGAAAGGCGGGAAAA
GGTGGAATTTATATTGGAACAAATGAGATTGTGTTTAGCCAAAAAAGATT
ACATCCGTACGCAGATTATCAGCAAGAAAATCAGTACCAAATTCTTTGAC
GATAACAAGGAACAGgacttgaaattgaaatattatCAACTGATGATTGA
GCTTGGACACAACGACGGAAAATACTTGCCCATTTGTAAACATTACAGAG
CTGTCTTCGATACACCTTCCATACAAGAAGATGAAACCAAAATGAAAGAG
GCTCTTCGCAATGTCGTTTTGTTCATCGTTTTATCAGCATACGATAACGA
ACAATCCGATCTTTTATCCAGAATTGCCGACGaaccaaaattagaaaata
tcATGTCTTTCAAGCGATTGATCAAAAACTTCACCACGCACGAGCTGATA
CACTGGGTAAGGTTCAAGGAGCTGTACGAAGTAGAGTTGTCTCAAGGAAC
TGAGGCTAACCCTGCCACCGGTGTATTTAACCGAACAACAGAACAAGGAC
AGAAACGATGGGATGATTTAAAGAAGAGAGTTGTGGAACATaaTTTGAGA
GTGATGGCGAAATACTATACAAGAATCACCGTCGAACGCATGTCTCAACT
TCTCGATCTTTCTAAAGAGGATGCTGAGGAATATCTTTCAAACTTGGTCA
CCTCAAAAACCGTATTTGCAAAGATTGACCGCCCGGCCGGCATTATCGTA
TTCCGCCCACCGAAAGACGCTAGTGACACGCTGAACGATTGGTCACGTGA
CATCTCAGAGCTGATGGTATTATTGAATAAAACGACTCACTTAATCACTA
AAGAACAAATGGTTCATCAGCTACTGAACTGAACAAACCGAACTTAAATG
ATAACTGTTTGATGAAACTTATAAATTATTTTGCTCATTTATTGACGGAA
TATTTCGTGTTCAAATTTTACGGACATTACGGATGgatgtatttttgaaa
acattaagtTCAGCCAAATGACCAGTTTTAATGTTCCTGACACAAACGTC
AAAACAATGTTCATTTAACGTTTTTGTACGTTATGGACGCCTAAGCAGGC
ATCGTTCTGACGTTTTGAGCCGCCTGGGAATACAATGAAAGGTTTGCGAC
GAAATGTATGAattttaagaaagttttttaacCTAAATGatatcttatta
aaaaaacagtGTTCATCCCAACTGCCACAACGTCCATGATATAACATCCA
AATAACGTTAAGTGGTAGCTGGGAATCAGTTTCTTTCTGTATCCATGAGG
ATGTGCCGTTGGTCTATTTATTATGCAGttagaattttttattcattacG
ATAATTTTGCTATTTGAAAGAACCAAGTTATAAAAGAATACATCTTTTTC
GTATCATAATTCCTTGTTTACTCATTCTCtagcaaaaagtttttatatat
TGAATgacagaaaaaatatataaagt
Run BLAST on NCBI

protein sequence of TCONS_00070082-protein

>TCONS_00070082-protein ID=TCONS_00070082-protein|Name=TCONS_00070082-protein|organism=Clytia hemisphaerica|type=polypeptide|length=458bp
MASETITDMKGNIVKMEVDYSETCDKKLPELEEMAKSGKIEDALEALLAL
EKQTRTAADMFSTSRVLVTVIKICFATKNIELLNEHLLLLTKRRGQLKQA
VTKMVQEACTYVDQIEKKEDQLEFIDTLRTVTSGKIYLELERARITRKLA
QMKEADGNIADAATVLQELQVETFGSMERREKVEFILEQMRLCLAKKDYI
RTQIISKKISTKFFDDNKEQDLKLKYYQLMIELGHNDGKYLPICKHYRAV
FDTPSIQEDETKMKEALRNVVLFIVLSAYDNEQSDLLSRIADEPKLENIM
SFKRLIKNFTTHELIHWVRFKELYEVELSQGTEANPATGVFNRTTEQGQK
RWDDLKKRVVEHNLRVMAKYYTRITVERMSQLLDLSKEDAEEYLSNLVTS
KTVFAKIDRPAGIIVFRPPKDASDTLNDWSRDISELMVLLNKTTHLITKE
QMVHQLLN
Run BLAST on NCBI

transcript from alignment at scaffold_513:581942..592113+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070082 ID=TCONS_00070082|Name=TCONS_00070082|organism=Clytia hemisphaerica|type=transcript|length=10172bp|location=Sequence derived from alignment at scaffold_513:581942..592113+ (Clytia hemisphaerica)
tttagaatttcacaatcattgaaatctcaggtggaaaataaaaacaaaat
acaaaatggcTTCTGAAACAATAACAGATATGAAGGGCAATATTGTCAAA
ATGGAAGTGGATTACAGTGAAACTTGCGACAAGAAACTTCCTGAACTTGA
AGAAATGGCTAAGGTAAAATAGATTGTGTGTGATTGTATTATTTCACCCA
AGATATATCTATACCTAATTAGGAATTTCTACTTTGAATATGTTGCCTTT
TTAATGATGATCCAGTGGATAGAAATGGTGGTATCAGGTCTAACTTAAGA
TGCTATTTTAAGATGTTCTAAAGTCTGCTTTCAATGAAAATGTATCTGTT
TTTATGTGAGATATCATAATTCCTTTGCCTGTCAATAgctattttgtttt
tcttttagagCGGTAAAATTGAAGATGCATTGGAAGCTTTATTAGCTCTT
GAAAAACAAACAAGAACGGTATGTTTTGTATGATTTTGACATGGGTTCCT
TTTCACCTCATTTATAGTTGCCTTGTTTTGTTTcagtttattgttttttt
ttcgtctgCTTTTTATTACATTAACAACAAATGGCTTGTTGTGTATCATC
AATTGAGAACCCTCCTTtcaaaaagcagtttgtttttaATACGAGAacaa
gtttttttcataagttcTCAAGACTCTTCTGAAAACTGGCtgacattttt
atattttcacatAAAAGTACAAcctgaaaatctttaaaacaacattttgg
aTTGAAACAAGCTAATTCTGAGCTATGACCCTGTTTGTTGGTGGAAAGCT
GGTAAATACTTCTGTTCATAAACTCTTTTATATCTTCAAGTCTTTGGACT
TTAGggtattcttttaaaaatgttcacTATTTTTAGGCAGCTGATATGTT
TTCCACAAGTCGTGTTCTAGTTACTGTCATCAAGATTTGTTTTGCCACAA
AGAATATCGAACTACTCAATGAACATCTGTTGTTATTGACAAAACGAAGA
GGACAACTCAAGCAGGTGAGTCAATTATTATCCCAAAGAATCGCATGAAT
AAATTGCACTCTTTAGCTGAAATGTCTTTCCAACAAGTTAtatgattttt
atgatattttctgTTTCTTACCTTCTATACATAGAGATTACAACTTACAA
ATCTTTTTATGAAGTCAAGCCCGTTGCATGTTTgatagttctagttctag
ttctattgaattatcacataatacattacgtacattttcgtgattttatA
CATAAAggataaaacaaaataaaaagttaaaaacattagtGCAGGATGTT
CTAAGACGATATGACGGCGTAATAGTAATAGAGGCTCGATTTACACAGGA
TTATGGAAACCCATAGCCTAAGATACTAAAGTATACTATAATATTATTGC
TCAACAAGTATTATTCATTCCACAGGCTGTGACAAAAATGGTACAAGAAG
CATGCACGTATGTTGATCAAATCGAAAAGAAAGAGGACCAATTAGAATTT
ATTGACACACTTCGTACAGTCACGTCCGGAAAGGTTAGTTTCCTCgatat
ttttcactttatttgtaAAGGTTACAAATAATCACTTACATAGCCATTCT
AAGTGTCAAAATAGCATGACAGTTATTTAGGCAAATGCACGCACTCTTGT
TATTCAATTTGAACATTCCCTTTCAACCACGAAGGAGCTTTGCCTCGAAC
AAACACAAACACCATTATATGAATCACTTATTTTTAATCATCCACCTTAT
ACTAGTTTCATGTCATGTAAAAAAActgtatttcattttcattgttatCG
TTAGATTTATTTGGAGTTGGAGCGTGCAAGGATAACTCGTAAATtggctc
aaatgaaagaggCTGACGGAAATATTGCAGGTAATTTCGTACGCTCTTCT
CTCAGTGCACCTTCCTACCCTTTAGTGTGAGGAAAAAGCGTGAGGAAAAT
GGTTTAGACTTTTTTGACCTCAAGTTTCAAGTTTTTGCATTAGTTTTCTC
ATAAACATACaggggttttgctttgtttttggtaggctggtgaatgaaaa
attaactctggcGACTTCTAGATTCTAGACcggcgaattcttagcaagcg
CAGTGTATTGATTAAGCGGGATTAAGCCGGGCCTAAGTAAGATCCCTGAA
CATAGCGTCATTTCTTCCTGGTAAAACTGGAATTAATATTAGTTGGTGGC
GTGTAGCAATTATAGGTGTATTAAGGACAGGTCCAATCTTGCATCAACCC
AGGAGGCAATCTTTAAATCACACGTTGCTTTTTGACCCACCTTCTTACAA
TCCATTCTCTCTAACCAAAACACCACTCAAATACGAAGAATCCCATTAGA
AGTTTCCTCAGCTAATATTTAGTATTTAGTTTATATTATATTTAATTTTC
GTGCCAAAAACAATTGGTAAAGAAAGTTTGCGATTAAAATCTGTCAAATT
ATAAAATCACGTGATTTCAACAGCCTCTAAATGGCAACTACTACTTCTGT
CTTCACATTTCAATTTACAGGAATAAAACTGTAACTGTAGACAATGTACA
CCGAGTCTCTCAGCTACTTTAACTTTCTTGTTTTCCAGATGCGGCAACGG
TACTCCAAGAATTACAAGTGGAAACATTCGGCTCGATGGAAAGGCGGGAA
AAGGTGGAATTTATATTGGAACAAATGAGATTGTGTTTAGCCAAAAAAGA
TTACATCCGTACGCAGATTATCAGCAAGAAAATCAGTACCAAATTCTTTG
ACGATAACAAGGAACAGGTCTGTAAACAtcacaaaaaaaacattacattt
TAAACATTACAGAGCAATCTACATACGACAAACCTCCATTTAAAGTTCGT
CAAAAGTCAATATGGCCTTATTTCACGCCTGTGAAAACATTTCCCATCAA
ATACCCTATTTGTTTTGACACTCGCAAACAAAGTGCATATGTTTTCagtt
gaaaattaaagttatcTTGAAAACTTGTAGAAGGAAAGAGGCTCAACATC
TAGAGAAGGTGTAAATTTCCCAGCATCTATTTTTTTCCCGAAGAGATTTT
AGCGCAGCGTAAGTAGTGTAGTTGTGTAATAGCTCTAATTTTTACAGgac
ttgaaattgaaatattatCAACTGATGATTGAGCTTGGACACAACGACGG
AAAATACTTGCCCATTTGTAAACATTACAGAGCTGTCTTCGATACACCTT
CCATACAAGAAGATGAAACCAAAATGAAAGAGGTACGTACTTTCATATTA
TAATGGTCAAAAGAATGGTGAAGCATTtcaattgggcttttccagaaaaa
aatcgtgcaccccctgttgaggaggtccatttccattccaagggggtaag
gtttgaaatgcagtggaattccataggggtagacgaaaatccgtcaaaaa
taagcggaattccaagggggtaatgactaaaaatttgtaaaaattcggaa
ttccagaagggtatgatcctaaatttggttggaattccaagggggtaggt
cacaaaaggttggacctcctcaacagggggtgcacggtttttttctggaa
aagcccattacgGGACCAATCTAACGTAGAAccataaattttctttcaag
tggGCGCTATTGTTTTAATCTTGTATCCAAGCTAAGTATTCGAATCTGGA
TTTACACATGTCAGCTTTTTCAATAccaaagaaaaagttgaaacgTCTAT
TTAAATTCGATATGTCTTTGCAAAAACCTATTCGCTTACCAATTCGAAAC
TGCCTTACCTAGCTACCCTCCTCTTAACAGTATTGTATCTATACCCTTCA
CCATCCACCGACTAAACCCCATCAAATTATCAAAAGTTGTATGACACAGC
AGtgtaaatcaatttttaaatgtTCCCATTTTTGTTTAGTATGTTCTTTG
CAATGACCAAAGCTTGTTTCTTGTTTCAGGCTCTTCGCAATGTCGTTTTG
TTCATCGTTTTATCAGCATACGATAACGAACAATCCGATCTTTTATCCAG
AATTGCCGACGaaccaaaattagaaaatatcATGTCTTTCAAGTAAGTCA
AACTTCCACGTAGGTAGCAGTACGCCCTTGGGTGTTTTTACATTTACAGG
TGGTCTTGTGCCATAGCAAAGTGTGCCCTGAAAGTGACCAAAATATTGAA
TCAATCATCACCATCAGTCTTTAGTAACCAGTGCAGTGCTAGAACCTATG
TATGATTTCTTTAATCAGATGAGATATGCTTGCAGTATCAAGTCAGATAT
ATCCTAGCTTAGAGTATACTTTTCTTTTCGTTAATTTTTGATTGCGCTGA
TTCCAGTGATTGAGTTAAGTtaccattttgataaaaaacgatttcaaaat
ttcgaaatgtttttttgaagatttagaACGGACAACCAACATAAACAACA
TATTTGCAAAACCATATTTTTATATAACAATTTATACTTTCTTAAATTAT
GTACCTTACAAAGCAAAGGGAATCTGGCGGATGCTTCACGTTCTGCCTAA
TTTACATGAAAAGTCAAGATGGCGTCGTGTACTGCCAGGCGAGTTCATAG
TTTCATCCAGTCAATCATAAAGCCTAGGCCTCCGTACAGTACTAGCTTCA
GCGTAAGTATCTTTTTgcttaaacgttttttttcatttgcagGCGATTGA
TCAAAAACTTCACCACGCACGAGCTGATACACTGGGTAAGGTTCAAGGAG
CTGTACGAAGTAGAGTTGTCTCAAGGAACTGAGGCTAACCCTGCCACCGG
TGTATTTAACCGAACAACAGAACAAGGACAGAAACGATGGGATGATTTAA
AGAAGAGAGTTGTGGAACATGTAAGTCGCCCACTCAAACTAGTCAAGTTA
TCATGTCTAAGATAAGCCCTTTGTATGTCTACAAGCTCGGCATTTTTTGT
TCTGTTTGCTTTTTAGCACGTTCACAAATAGACACGTTACGTTAGTTCAC
CCTCCGATACAGTTTAAACCAACCCTTCCGTCATGGTAGTAAGGTTGTTT
TGGATGCACCGAACGTTCACGATTAAGAGGCAGTTTTTTGATCCCGGCTA
AACAAATGCTTTGATCGGGGTTTCTTAAATAATGGTACCATCAGTGTACT
ATGTTATGTGAATTTCCCTCAACTTTTTTCTCTCAAAcatgaattaattt
tttcttcaagcAAAAATGAGTGAAGCCAAAGGAGACGATCGTGGGGTGTG
CTTAAGAAACCTGCCTTCAGACAGCAAACTTTATGACGACTTTAATTTAC
AATTAAGATAGGCAGATCTGTCTAAAGTTAAGCTCCTTTTAATCCTTTTA
AGAACAAACCCAATTTACCAACTAAGAATCGTCCCTTTACGTAAAGCATT
TACGTAACCTTTCTCTCGTCTGATTTCTAAGGGCATGAAGTTTTTTATGC
ATATCAATTTTATAGACCACCTAACGCGTGACTGATTAATATTCTTTTGT
TCCCTGATCAATTCACTGTTTTTATAGCGTAGGCTACCTTACACTGTTGA
GTTTATTTATGGGGACATTTCTGGGAATGAGCTTTAAAAGAGCTATTGGA
GacaacatgtttttttttctgatgagATAATCTAATTACGATGCTAAATT
AATGTTCATTTAGAAATGTTCCTGCCAGGTCACTGTCACACATTCCGCCT
GACAATAACTAATTATTTTTGCTTCCTCGAACCTTTTTGTtgtaatcgca
cgatgagttattttttcttatttggcgctcgttcaaagagagcaattaat
cgttaattgcatcctgtagagagcaattaatcgttaatcacactctttga
tgccgcgccaatgtttacaaaattaactttaatgtatttttcttatattt
tttttcatcgaacgttttaattgcattcgagattcattttgagagaaaga
aaatctataaaaacaacaataaaagaattacatagagagaagagaaaaat
atgacttttagtggaatttaattttcctaacggggaaaaagtagtgcgat
tagctcgtattCACATAacaactcgtacaattcgaaaattacaCTCGTGA
ttgttttgtttcgaattttcctcgtcctttcggactcggaaaattaataa
caaaaaaatcactcgtgcaattattctcgaattgcactcgttatNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTAACTATCAA
ATCAACACTTTCTTCTTAGAGCTTACAGTCAGATTAGCCTTAATTTGTTC
TAAGGTGTCGGCCAAAATATTAGCCTCagtttttataaagattttcacat
gaataaaaaaaaattatttttctttcttagaaTTTGAGAGTGATGGCGAA
ATACTATACAAGAATCACCGTCGAACGCATGTCTCAACTTCTCGATCTTT
CTAAAGAGGTAAGCACTACTGGTCTCAAACGACTGGATTCGTCCTACCCT
AAGATGAAAAGTGTCCTTTTTACAAAAACTCAGTTCAACCCATTCTCAAC
CCTTTTTggcaaaattcaccaaaattagttttaaattaaaaaaagttggt
gtcccGCCAAATTAGTTATTGCTATGAGTAAACTacagattttaattttg
atctTTTAACAGGTATCGTCGGCTGTAATGTGGTTGTGTATTTCCTATTA
GGTCTAAATTCGTCAGGGGGCTGATGTTATGATTAGGTTTCCTAAAGCAA
CAAAACTGTACaaacagtggagtctctttaaggacatgtttttttttgac
tgtaccaaaatcaggttttcgaaaatcgtgaaaatcactttttttcaatt
atttcgtcattcgcatgatgaattttcccaaaattttgatatgtattgaa
atttgggaagggctttaaaatgagctatttgAAATTTCAAAATTCGGAGT
ATTTCAGGATTAATTAATCAAGGAGTGTTATAAATCATATCTCACTCCAT
GACTCATTATTCGGTCCTGAGGAGGTTTATATGCATTCCTGAGGTagcct
aaaatcataaaatagcctgaggagtaattttttctttagttcgttcCTTT
ATttcaactaaacaaaaatctcaaatcacttccccgatagatagacttgt
caggaaaatatatacgattagaattagcacctagatttcaaaaatgatca
atttgatcccattttcctccggttttttccagaaaaaagagGTCTATGtg
aaaattcaatcctttacctacaccctgatataagtttcgtatataaattg
gacacgacaaaagccaaatatagagccgactttataaatccgaaataaac
tatgatttttttcatactGAAATACTCCGGATTCAACAAGCGATATCTTA
AGTTCCATAAAAGCTATTAAGATCGGACAAAAAGTATCGCGCAGAGCTAc
taatctattttcttatttttgaataacgataagagagggttcagctgtct
ctgttagtgccgatttgaaccgggttggttgaaaatcggcattttggtac
agtcaaaaaaaaacatgtccttaacTCGAACCCTATAtgactcgaatgtc
tccttaactcgaacaagttatATGGTTCCTTCATTTAATATGTAATGCAT
TATAAAAtttactctataactcgaacaaatttgtgttttctGTGCGTGTT
CGatttatggagactccactgaaTAATGCATTTTTCCattattttcactt
tcactCACTTTCCAGGATGCTGAGGAATATCTTTCAAACTTGGTCACCTC
AAAAACCGTATTTGCAAAGATTGACCGCCCGGCCGGCATTATCGTATTCC
GCCCACCGAAAGACGCTAGTGACACGCTGAACGATTGGTCACGTGACATC
TCAGAGCTGATGGTATTATTGAATAAAACGACTCACTTAATCACTAAAGA
ACAAATGGTTCATCAGCTACTGAACTGAACAAACCGAACTTAAATGATAA
CTGTTTGATGAAACTTATAAATTATTTTGCTCATTTATTGACGGAATATT
TCGTGTTCAAATTTTACGGACATTACGGATGgatgtatttttgaaaacat
taagtTCAGCCAAATGACCAGTTTTAATGTTCCTGACACAAACGTCAAAA
CAATGTTCATTTAACGTTTTTGTACGTTATGGACGCCTAAGCAGGCATCG
TTCTGACGTTTTGAGCCGCCTGGGAATACAATGAAAGGTTTGCGACGAAA
TGTATGAattttaagaaagttttttaacCTAAATGatatcttattaaaaa
aacagtGTTCATCCCAACTGCCACAACGTCCATGATATAACATCCAAATA
ACGTTAAGTGGTAGCTGGGAATCAGTTTCTTTCTGTATCCATGAGGATGT
GCCGTTGGTCTATTTATTATGCAGttagaattttttattcattacGATAA
TTTTGCTATTTGAAAGAACCAAGTTATAAAAGAATACATCTTTTTCGTAT
CATAATTCCTTGTTTACTCATTCTCtagcaaaaagtttttatatatTGAA
Tgacagaaaaaatatataaagt

Coding sequence (CDS) from alignment at scaffold_513:581942..592113+

>TCONS_00070082 ID=TCONS_00070082|Name=TCONS_00070082|organism=Clytia hemisphaerica|type=CDS|length=1377bp|location=Sequence derived from alignment at scaffold_513:581942..592113+ (Clytia hemisphaerica)
atggcTTCTGAAACAATAACAGATATGAAGGGCAATATTGTCAAAATGGA
AGTGGATTACAGTGAAACTTGCGACAAGAAACTTCCTGAACTTGAAGAAA
TGGCTAAGagCGGTAAAATTGAAGATGCATTGGAAGCTTTATTAGCTCTT
GAAAAACAAACAAGAACGGCAGCTGATATGTTTTCCACAAGTCGTGTTCT
AGTTACTGTCATCAAGATTTGTTTTGCCACAAAGAATATCGAACTACTCA
ATGAACATCTGTTGTTATTGACAAAACGAAGAGGACAACTCAAGCAGGCT
GTGACAAAAATGGTACAAGAAGCATGCACGTATGTTGATCAAATCGAAAA
GAAAGAGGACCAATTAGAATTTATTGACACACTTCGTACAGTCACGTCCG
GAAAGATTTATTTGGAGTTGGAGCGTGCAAGGATAACTCGTAAATtggct
caaatgaaagaggCTGACGGAAATATTGCAGATGCGGCAACGGTACTCCA
AGAATTACAAGTGGAAACATTCGGCTCGATGGAAAGGCGGGAAAAGGTGG
AATTTATATTGGAACAAATGAGATTGTGTTTAGCCAAAAAAGATTACATC
CGTACGCAGATTATCAGCAAGAAAATCAGTACCAAATTCTTTGACGATAA
CAAGGAACAGgacttgaaattgaaatattatCAACTGATGATTGAGCTTG
GACACAACGACGGAAAATACTTGCCCATTTGTAAACATTACAGAGCTGTC
TTCGATACACCTTCCATACAAGAAGATGAAACCAAAATGAAAGAGGCTCT
TCGCAATGTCGTTTTGTTCATCGTTTTATCAGCATACGATAACGAACAAT
CCGATCTTTTATCCAGAATTGCCGACGaaccaaaattagaaaatatcATG
TCTTTCAAGCGATTGATCAAAAACTTCACCACGCACGAGCTGATACACTG
GGTAAGGTTCAAGGAGCTGTACGAAGTAGAGTTGTCTCAAGGAACTGAGG
CTAACCCTGCCACCGGTGTATTTAACCGAACAACAGAACAAGGACAGAAA
CGATGGGATGATTTAAAGAAGAGAGTTGTGGAACATaaTTTGAGAGTGAT
GGCGAAATACTATACAAGAATCACCGTCGAACGCATGTCTCAACTTCTCG
ATCTTTCTAAAGAGGATGCTGAGGAATATCTTTCAAACTTGGTCACCTCA
AAAACCGTATTTGCAAAGATTGACCGCCCGGCCGGCATTATCGTATTCCG
CCCACCGAAAGACGCTAGTGACACGCTGAACGATTGGTCACGTGACATCT
CAGAGCTGATGGTATTATTGAATAAAACGACTCACTTAATCACTAAAGAA
CAAATGGTTCATCAGCTACTGAACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043637XLOC_043637Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070082-proteinTCONS_00070082-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070082-exon-scaffold_513-1491911889:581942..582104TCONS_00070082-exon-scaffold_513-1491911889:581942..582104Clytia hemisphaericaexon
TCONS_00070082-exon-scaffold_513-1510915933:581942..582104TCONS_00070082-exon-scaffold_513-1510915933:581942..582104Clytia hemisphaericaexon
TCONS_00070082-exon-scaffold_513-1575043694:581942..582104TCONS_00070082-exon-scaffold_513-1575043694:581942..582104Clytia hemisphaericaexon
TCONS_00070082-exon-scaffold_513-1491911889:582350..582409TCONS_00070082-exon-scaffold_513-1491911889:582350..582409Clytia hemisphaericaexon
TCONS_00070082-exon-scaffold_513-1510915933:582350..582409TCONS_00070082-exon-scaffold_513-1510915933:582350..582409Clytia hemisphaericaexon
TCONS_00070082-exon-scaffold_513-1575043694:582350..582409TCONS_00070082-exon-scaffold_513-1575043694:582350..582409Clytia hemisphaericaexon
TCONS_00070082-exon-scaffold_513-1491911889:582828..582956TCONS_00070082-exon-scaffold_513-1491911889:582828..582956Clytia hemisphaericaexon
TCONS_00070082-exon-scaffold_513-1510915933:582828..582956TCONS_00070082-exon-scaffold_513-1510915933:582828..582956Clytia hemisphaericaexon
TCONS_00070082-exon-scaffold_513-1575043694:582828..582956TCONS_00070082-exon-scaffold_513-1575043694:582828..582956Clytia hemisphaericaexon
TCONS_00070082-exon-scaffold_513-1491911889:583367..583474TCONS_00070082-exon-scaffold_513-1491911889:583367..583474Clytia hemisphaericaexon
TCONS_00070082-exon-scaffold_513-1510915933:583367..583474TCONS_00070082-exon-scaffold_513-1510915933:583367..583474Clytia hemisphaericaexon
TCONS_00070082-exon-scaffold_513-1575043694:583367..583474TCONS_00070082-exon-scaffold_513-1575043694:583367..583474Clytia hemisphaericaexon
TCONS_00070082-exon-scaffold_513-1491911889:583746..583821TCONS_00070082-exon-scaffold_513-1491911889:583746..583821Clytia hemisphaericaexon
TCONS_00070082-exon-scaffold_513-1510915933:583746..583821TCONS_00070082-exon-scaffold_513-1510915933:583746..583821Clytia hemisphaericaexon
TCONS_00070082-exon-scaffold_513-1575043694:583746..583821TCONS_00070082-exon-scaffold_513-1575043694:583746..583821Clytia hemisphaericaexon
TCONS_00070082-exon-scaffold_513-1491911889:584530..584708TCONS_00070082-exon-scaffold_513-1491911889:584530..584708Clytia hemisphaericaexon
TCONS_00070082-exon-scaffold_513-1510915933:584530..584708TCONS_00070082-exon-scaffold_513-1510915933:584530..584708Clytia hemisphaericaexon
TCONS_00070082-exon-scaffold_513-1575043694:584530..584708TCONS_00070082-exon-scaffold_513-1575043694:584530..584708Clytia hemisphaericaexon
TCONS_00070082-exon-scaffold_513-1491911889:585039..585173TCONS_00070082-exon-scaffold_513-1491911889:585039..585173Clytia hemisphaericaexon
TCONS_00070082-exon-scaffold_513-1510915933:585039..585173TCONS_00070082-exon-scaffold_513-1510915933:585039..585173Clytia hemisphaericaexon
TCONS_00070082-exon-scaffold_513-1575043694:585039..585173TCONS_00070082-exon-scaffold_513-1575043694:585039..585173Clytia hemisphaericaexon
TCONS_00070082-exon-scaffold_513-1491911889:585871..585983TCONS_00070082-exon-scaffold_513-1491911889:585871..585983Clytia hemisphaericaexon
TCONS_00070082-exon-scaffold_513-1510915933:585871..585983TCONS_00070082-exon-scaffold_513-1510915933:585871..585983Clytia hemisphaericaexon
TCONS_00070082-exon-scaffold_513-1575043694:585871..585983TCONS_00070082-exon-scaffold_513-1575043694:585871..585983Clytia hemisphaericaexon
TCONS_00070082-exon-scaffold_513-1491911889:586584..586761TCONS_00070082-exon-scaffold_513-1491911889:586584..586761Clytia hemisphaericaexon
TCONS_00070082-exon-scaffold_513-1510915933:586584..586761TCONS_00070082-exon-scaffold_513-1510915933:586584..586761Clytia hemisphaericaexon
TCONS_00070082-exon-scaffold_513-1575043694:586584..586761TCONS_00070082-exon-scaffold_513-1575043694:586584..586761Clytia hemisphaericaexon
TCONS_00070082-exon-scaffold_513-1491911889:589922..589999TCONS_00070082-exon-scaffold_513-1491911889:589922..589999Clytia hemisphaericaexon
TCONS_00070082-exon-scaffold_513-1510915933:589922..589999TCONS_00070082-exon-scaffold_513-1510915933:589922..589999Clytia hemisphaericaexon
TCONS_00070082-exon-scaffold_513-1575043694:589922..589999TCONS_00070082-exon-scaffold_513-1575043694:589922..589999Clytia hemisphaericaexon
TCONS_00070082-exon-scaffold_513-1491911889:591307..592113TCONS_00070082-exon-scaffold_513-1491911889:591307..592113Clytia hemisphaericaexon
TCONS_00070082-exon-scaffold_513-1510915933:591307..592113TCONS_00070082-exon-scaffold_513-1510915933:591307..592113Clytia hemisphaericaexon
TCONS_00070082-exon-scaffold_513-1575043694:591307..592113TCONS_00070082-exon-scaffold_513-1575043694:591307..592113Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_513supercontigscaffold_513:581942..592113 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
202.713	201.105	209.471	200.782	180.526	146.67	159.379	167.986	149.614	156.217	151.114	125.149	120.884	120.523	142.138	166.707	151.985	163.322	61.1056	68.0042	105.832	102.266	112.676	109.705	203.263	199.762	116.624	112.635	94.5537	89.5126
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000717PCI_dom
IPR011991WHTH_DNA-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00070082 vs. Swiss-Prot (Human)
Match: PSD12 (26S proteasome non-ATPase regulatory subunit 12 OS=Homo sapiens GN=PSMD12 PE=1 SV=3)

HSP 1 Score: 543.117 bits (1398), Expect = 0.000e+0
Identity = 271/446 (60.76%), Postives = 362/446 (81.17%), Query Frame = 2 
Query:   86 GNIVKMEVDYSETCDKKLPELEEMAKSGKIXXXXXXXXXXXKQTRTAADMFSTSRVLVTVIKICFATKNIXXXXXXXXXXTKRRGQLKQAVTKMVQEACTYVDQIEKKEDQLEFIDTLRTVTSGKIYLELERARITRKLAQMKEADGNIADAATVLQELQVETFGSMERREKVEFILEQMRLCLAKKDYIRTQIISKKISTKFFDDNKEQDLKLKYYQLMIELGHNDGKYLPICKHYRAVFDTPSIQEDETKMKEALRNVVLFIVLSAYDNEQSDLLSRIADEPKLENIMSFKRLIKNFTTHELIHWVRFKELYEVELSQGTEANPATGVFNRTTEQGQKRWDDLKKRVVEHNLRVMAKYYTRITVERMSQLLDLSKEDAEEYLSNLVTSKTVFAKIDRPAGIIVFRPPKDASDTLNDWSRDISELMVLLNKTTHLITKEQMVHQL 1423
            G IVKMEVDYS T D++LPE  ++AK G++++ +E LL+LEKQTRTA+DM STSR+LV V+K+C+  K  +LLNE+++LL+KRR QLKQAV KMVQ+ CTYV++I     +L  IDTLR VT GKIY+E+ERAR+T+ LA +KE +G++ +AA++LQELQVET+GSME++E+VEFILEQMRLCLA KDYIRTQIISKKI+TKFF +   + LKLKYY LMI+L  ++G YL ICKHYRA++DTP IQ +  K ++AL++VVL+++L+ +DNEQSDL+ RI+ + KLE I  +K L+K FTT EL+ W    E Y +EL +G+  +PAT VF  +TE+G+KRW DLK RVVEHN+R+MAKYYTRIT++RM+QLLDLS +++E +LSNLV +KT+FAK+DR AGII F+ PKD ++ LNDWS+ ++ LM L+NKTTHLI KE+M+H L
Sbjct:   11 GRIVKMEVDYSATVDQRLPECAKLAKEGRLQEVIETLLSLEKQTRTASDMVSTSRILVAVVKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINTKFFQEENTEKLKLKYYNLMIQLDQHEGSYLSICKHYRAIYDTPCIQAESEKWQQALKSVVLYVILAPFDNEQSDLVHRISGDKKLEEIPKYKDLLKLFTTMELMRWSTLVEDYGMELRKGSLESPATDVFG-STEEGEKRWKDLKNRVVEHNIRIMAKYYTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWSQKLNSLMSLVNKTTHLIAKEEMIHNL 455
The following BLAST results are available for this feature:
BLAST of TCONS_00070082 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PSD120.000e+060.7626S proteasome non-ATPase regulatory subunit 12 OS... [more]
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