TCONS_00070152 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070152
Unique NameTCONS_00070152
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length833

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070152 ID=TCONS_00070152|Name=TCONS_00070152|organism=Clytia hemisphaerica|type=transcript|length=833bp
AATCTTGCTTTCTTCTCTTCAAAGGTAAAAAGCAAGTGGAAAATTTCAAT
GTTCTGATATCAGGTAACCAAGTTCAACGAGTAAGTTCAACCAGATATCT
TGGAATAATTATTGATGAAAAACTAGATTGGCAAGCTCATATCCATCATG
CATCATGTAGCTAACAAGGTAAAACAAGGCTCTGGTCTTGTACGTAAATT
AAGTTATTTAATTTCTCCTCATTGTTTATCTTCTCTTTATCATGCCTTTA
ATGTCATTTACAATATTGTATTACATCTTGGGGCTCACCTAGCACCAAGG
GCCTAGGTAAGTTAAATTCTCTGATAAACAGTATATCATACAAGATGGAA
AAAATCTACtataaaaataatatgaaaCCACTAAATGTATTCAAAATCAA
TTCCCTCTATAAAGTAGAATGCAATAAACTCATCTATAAATTCATCCATA
AAATATCACCTAAAAGTCTAAACATGTTATTCAGTAAACCAATACATAAT
CTTGGCATGTGTCAACCTGCATCCAATTCACTGAAAACTTTAGTTTTTGC
TGACTCTCCTTCTCCCATTCGTTTCAGATGGCCCTCATTGTTGGAACCAT
ATTTGCCTTGATTTATCCACCAGTAGCTTTTCGATTTTCACCAAGAAACT
TAATCAAGACTGTTCGTCACTTAATAAAGTCTTATTTCTTCTCCACACAC
ccaattcaattttttaattaaatctgttgttgttgttgttgttgtaatgt
tattgttgtttattcatTATGTAAACCTCCTTTTACTGtacataggattt
tcatttCATGTCCTTCCGAGCTCGAAAGCCCTT
Run BLAST on NCBI

transcript from alignment at scaffold_513:418219..419051

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070152 ID=TCONS_00070152|Name=TCONS_00070152|organism=Clytia hemisphaerica|type=transcript|length=833bp|location=Sequence derived from alignment at scaffold_513:418219..419051 (Clytia hemisphaerica)
AAGGGCTTTCGAGCTCGGAAGGACATGaaatgaaaatcctatgtaCAGTA
AAAGGAGGTTTACATAatgaataaacaacaataacattacaacaacaaca
acaacaacagatttaattaaaaaattgaattggGTGTGTGGAGAAGAAAT
AAGACTTTATTAAGTGACGAACAGTCTTGATTAAGTTTCTTGGTGAAAAT
CGAAAAGCTACTGGTGGATAAATCAAGGCAAATATGGTTCCAACAATGAG
GGCCATCTGAAACGAATGGGAGAAGGAGAGTCAGCAAAAACTAAAGTTTT
CAGTGAATTGGATGCAGGTTGACACATGCCAAGATTATGTATTGGTTTAC
TGAATAACATGTTTAGACTTTTAGGTGATATTTTATGGATGAATTTATAG
ATGAGTTTATTGCATTCTACTTTATAGAGGGAATTGATTTTGAATACATT
TAGTGGtttcatattatttttataGTAGATTTTTTCCATCTTGTATGATA
TACTGTTTATCAGAGAATTTAACTTACCTAGGCCCTTGGTGCTAGGTGAG
CCCCAAGATGTAATACAATATTGTAAATGACATTAAAGGCATGATAAAGA
GAAGATAAACAATGAGGAGAAATTAAATAACTTAATTTACGTACAAGACC
AGAGCCTTGTTTTACCTTGTTAGCTACATGATGCATGATGGATATGAGCT
TGCCAATCTAGTTTTTCATCAATAATTATTCCAAGATATCTGGTTGAACT
TACTCGTTGAACTTGGTTACCTGATATCAGAACATTGAAATTTTCCACTT
GCTTTTTACCTTTGAAGAGAAGAAAGCAAGATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043686XLOC_043686Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070152-exon-scaffold_513-1491911889:418219..419051TCONS_00070152-exon-scaffold_513-1491911889:418219..419051Clytia hemisphaericaexon
TCONS_00070152-exon-scaffold_513-1510915933:418219..419051TCONS_00070152-exon-scaffold_513-1510915933:418219..419051Clytia hemisphaericaexon
TCONS_00070152-exon-scaffold_513-1575043694:418219..419051TCONS_00070152-exon-scaffold_513-1575043694:418219..419051Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_513supercontigscaffold_513:418219..419051 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.284277	0.39491	0.257498	0.314902	0.78988	0.727053	0.950255	1.1356	0.479109	1.12756	0.345613	0.643711	0.491565	0.392689	0.196598	0.63318	0.341449	0.349974	0.241754	0.196252	1.05794	0.735209	0.474719	0.770464	0.122086	0.163438	1.29442	0.444499	1.199	0.782582
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070152 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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