TCONS_00070288 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00070288
Unique Name	TCONS_00070288
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1325

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_52:25070..34122+
coding sequence from alignment at scaffold_52:25070..34122+

transcript sequence

>TCONS_00070288 ID=TCONS_00070288|Name=TCONS_00070288|organism=Clytia hemisphaerica|type=transcript|length=1325bp
ATAGGATTTGAAGGAAGTGCAAATAAGATTGGGATTGGTATCATTGAAGA
TGGAAATGTTTTATCAAACGTTCGACACACTTATATCACACCTCCTGGAA
AagGATTTCTACCACGTGACACGGCTAAACATCATCAAGAAcatatttta
gatattttacaaaaAGCACTGGAAGATGCCAATATCAAACCAGAACAAAT
CGATTGTGTTTGCTTTACAAAGGgACCAGGTATGGGAGCACCTCTGGTCT
CAACGGCTGTGGTTGCACGCACTGTAGCTCAGTTATGGGATAAACCTCTG
GTTGGTGTCAATCATTGTGTTGGACATATTGAAATGGGGCGACTCGTAAC
GGGAGCGCAAAATCCAGTCGTTTTGTACGTCAGTGGTGGTAATACGCAGG
TGATCGCATACTCACAACAGAAATATCGGATTTTTGGTGAAACTATAGAT
ATTGCTATTGGTAACTGTTTGGATCGATTCGCTCGAGTATTAAAgTTATC
AAACGATCCAAGCCCTGGTTACAACATTGAACAAATGGCCAAAAAAGGAA
AGAAGTACATCGAGTTACCTTACACTGTAAAAGGGATGGATATCAGCTTC
TCTGGTATCCTCTCATTTATTGAGGCAGCAGCTGACAAGATGATGAAACG
TGGAGAATGCACTGCTGAAGATCTTTGTTTTTCACTCCAAGAAACTTTAT
TTGCTATGCTCATTGAAATTACTGAGCGAGCAATGGCGCACTGTGGATCA
AACGAAGTTCTTATTGTGGGTGGTGTTGGATGCAACAAGCGACTACAAGA
GATGATGGGTAAAATGGCTGAAGAGAGAAACGGAAAACTATTTGCCACGG
ATGAAAGGTTTTGTATCGACAATGGAGTGATGATTGCTCAAGCAGGCTGG
GAAATGTTTCGTTCAGGTCACGTGACCCCTATGGATGACACGTGGTGCAC
TCAGAGATATCGAACTGACGAAGTCGATGTTCTTTGGCGTGATTGAAACA
ATTGAGAAGGTCAGATATAAGGATGTATCCAGAACCTGTTTGTCCAGTAA
GGATGTTATGTAAAAATATGGATTAAGAAATGTCTAGAAACTGCTCATAT
ACCCTGATACATCGTATTGGCCATGAGGATAATTGACTAAGAATACAATC
CAATGATTGCTACTTGCTGTATAATGAGACTTTATTAAAGCATGAATGAT
AGCTTTTGGTGTCGGTGGGTGGTTTGAGAGTATAACTTTCCATGCAAGTT
CTGAGGAAGCAATCTCTATGTTTTCTAACAGAAAGATGTAAATAGACGCA
CAAGTTGTATGTTACGATGCATGCA

Run BLAST on NCBI

protein sequence of TCONS_00070288-protein

>TCONS_00070288-protein ID=TCONS_00070288-protein|Name=TCONS_00070288-protein|organism=Clytia hemisphaerica|type=polypeptide|length=331bp
IGFEGSANKIGIGIIEDGNVLSNVRHTYITPPGKGFLPRDTAKHHQEHIL
DILQKALEDANIKPEQIDCVCFTKGPGMGAPLVSTAVVARTVAQLWDKPL
VGVNHCVGHIEMGRLVTGAQNPVVLYVSGGNTQVIAYSQQKYRIFGETID
IAIGNCLDRFARVLKLSNDPSPGYNIEQMAKKGKKYIELPYTVKGMDISF
SGILSFIEAAADKMMKRGECTAEDLCFSLQETLFAMLIEITERAMAHCGS
NEVLIVGGVGCNKRLQEMMGKMAEERNGKLFATDERFCIDNGVMIAQAGW
EMFRSGHVTPMDDTWCTQRYRTDEVDVLWRD

Run BLAST on NCBI

transcript from alignment at scaffold_52:25070..34122+

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00070288 ID=TCONS_00070288|Name=TCONS_00070288|organism=Clytia hemisphaerica|type=transcript|length=9053bp|location=Sequence derived from alignment at scaffold_52:25070..34122+ (Clytia hemisphaerica)
ATAGGATTTGAAGGAAGTGCAAATAAGATTGGGATTGGTATCATTGAAGA
TGGAAATGTTTTATCAAACGTTCGACACACTTATATCACACCTCCTGGAA
AaggtttgattttgaaattcatttttagaCGGGAAGTAGAGAAATCTTTA
TTAAACTAAAAAAATTCCCTCCCTTCCTGCCATCCTTCTCATGgcgtttc
atttttttccaatctAGTAAGGGCCTAATACTATATAAACATTCAGAAGA
ACTATTTTTATACAGCAGTATCGCCATGTAATTACAATATTGATTGCCTT
TTCAGTGCCGTAGAAGCATTTTTATTAATTGGGCTGAGGATTGGTAACAA
CGCGAGGAcaaaccatggtttggcccaaGGGAAAGCCCCCATGCCCCTGG
CacttctttttattgaatttttatcaaatttgattgGATTCTGTGTGAGT
GACTTATTATTGATAACTATTGACTAATTTCgttcatttgtttttctttc
cagGATTTCTACCACGTGACACGGCTAAACATCATCAAGAAcatatttta
gatattttacaaaagtaAGAACATCTTTTGTAGAAATCCtaatgataaaa
atatttgcaaaaatttcaGGGGGGGTCATGCAATTGCTCCATGACACAAT
GATCAGTAACTACCATTTTGGGAAAGTTTTTGTCACATCATCGCCAGCAA
ATTTTACTCCGCTGTTGAGTAACTTGTTTTCCATGCTCAAAAAAAGCACA
TCACCTCATAAAATAATTTGCggattaaaaattaatttcaattcaaaatt
caaatttcaatttcctCTAAAAAATTGCAATCATAAGCTCAGTTACTGAA
TTCCGGATATTCTTAGTAAATTTTTAATgcaaatttcatcatgaataggG
TGTATTCATAGTATGGTGTATTTAAGGGAACCTTTCTTCTCTGCATTATC
AATTCTTTCGGCAAAGAAAAACAACGTTAAACCGGCTATATCCAATTTTA
TCGATTATTTTGTTTCTTATTCAGAGCACTGGAAGATGCCAATATCAAAC
CAGAACAAATCGATTGTGTTTGCTTTACAAAGGGTAAGGTCTATTGcgcc
attccattttatctcCATACAGGGGGCGGACGAACATTTCCACGGGATAA
TCCGAGAAAGATTTCCTGGATTTCGTCCACCGTCACTTTaaagtacaaaa
agaaagaaattttttcctaggtttttttcaaaatttgccattttccaggg
ggtatcctcacatttccaagaattttattctgacttgaaaaggttcgtcc
tcctgtatggaaatttaatgaaacAGCCCATTTTCTTTGTTGTCCTCGCG
AGCGAAATAGgtgcagtttttgaaaaagggGAATTTTCTTAAGAGAAATA
GAACGGGAGCTAGCCAGTGGTTTTAAAGCTACTTCCTTGTGTTTTACCAT
TCTAGAGAAAGGTGGGAAGATCGAGCAAATCTTCAAGTGTTTTTCCACTG
AAAAGGCTATTCCATCACTACAGTCGACTCTCGCTTATCCAAACAacttt
tattcgaatctttctacaaTTCGAATTTATTCTTAGTTCCCATGAGAGAG
AAAACCTCTTAAGATATTTTCTAGGATTTAAATATCTCcgttattcgaac
aaataagattcctcgttcgagttcgaattagcgaaagtCAATTGTACATA
TTTGGTGATGTTAAGAGAGGTAACGTCCGATAACCATATTATTATATTAA
CGATAACActaaaaaaacctgaaaaagtGATCTGAAtagaagttttgatt
ttttgtaggACCAGGTATGGGAGCACCTCTGGTCTCAACGGCTGTGGTTG
CACGCACTGTAGCTCAGTTATGGGATAAACCTCTGGTTGGTGTCAATCAT
TGTGTTGGACGTATCTTTTCATTTGAGTTACAATGCCTTTCACCATCAAT
GCCGTTTTCCGTTCGTGGCATCCCCACATATTTTATCCAAAATGATTATC
CAAATGgactgttccattaaatttccattcagggggggggggttggacga
agcttttcaaggcaaaaaacGATTCTTAGAAATTtctggataccccctgg
aaaatggcaaaatttgcaaattaatccttagaaaaattcttttcatacct
taaaagtgAGGATGGaagaactaaaatcagtcttttactccctggaaatt
ttagaataaccttTAACCctcttgaaaaatgaaaaaatactgcTTTATAt
ctcctggaaattcttctccgaTTACCCGCTTGAAATGTTGGTCGACCCGT
TCTGTATGGATATGAAATGGAATTTCGTACTCGATTTGTTCGTTTACCTT
ATTAGGAAAACCTCATCCTACTGAGCGAGTGGTTCTGCAATCCTGATTCC
TTCGTTTGCCTCCTAGCTATATCAGGATTGGTCAAGCAGgaatttttcta
agcactttgagcTGGGCCCTTTTTTGTAAACTTAGATTGAATTTCTAATA
TACTTGAAAGGGAACTTGCTCTGCAAAGCTGTACATTGATGAAGCTGGGG
GTCTTGTGGGTGTTCAGAGGGCGAAGCTcccaatttttttgaatatgTAG
ATAATAATTAGTTAGTTTTGctcataaaaaacaaaaaaagtttaatttcg
cTAGAAAAAATCTATTTTGGATTGAGTTTCAATCCTTGGTCAAACCACCA
CACTATTAATAAAAGTCAACTTTACAGCTATATCAGTACAATAAAATATG
AACCCAATATGTGTCAATCCTTAACAAGAATAATTATAAAGATATTGAAA
TGGGGCGACTCGTAACGGGAGCGCAAAATCCAGTCGTTTTGTACGTCAGT
GGTGGTAATACGCAGGTCAGTGATTTATTTCTACTCTATAGTATCTTTCC
AACGTAACGTTATGGTCACCGTTATGCTAAttatttattgtttattttgc
aagttgttttttttagcttgaaatttaTTGTGAAAATGTCGAgtgaaaat
caaatcaaatacgTACTGTAAATAATGGGTTGTTATATAAAGCCTAAAGG
GGTTAGTGTCTTAAATTGGGTGTGGATATTTTGGGGTGAAAGATAGATCA
ATGAAAATCTAGTGGTAACAGATTCCGTGAAATAACATTTCTATCACATA
GGATAAAAAAGACCGGAGAGACCCAATGATCTACTATTTAACCATGGGCT
TTGTTAATGACTCTCTTGATTTGGATGAACAACACATGATTCTTAAATCA
TTTCTTTTTCAGGTGATCGCATACTCACAACAGAAATATCGGATTTTTGG
TGAAACTATAGATATTGCTATTGGTAACTGTTTGGATCGATTCGCTCGAG
TATTAAAggtatttctcattttttttaactgattaAGATTAGATTTGAAA
ATGTTGGAATAGAGAGATTTTCGTAAAAGGAAACTATTTAATATTTCTGC
CAGGAACCATTCATCTGATTTATCTGAtttattaatttcaattttctatg
gACCCTGCTAAAAGGGTTCAATTGAAAGTTGGACTTCCCTTATAATTATT
CTAGTTATCAAACGATCCAAGCCCTGGTTACAACATTGAACAAATGGCCA
AAAAGTAAGACACATTTCAAACGTTACCACATATCGTTAAATTTTTCCAA
TATAATTTTCTCTCCTGAGACACCATGTATTCAAACGAGCCcgcagggtc
ggatacaggaggtaggctatcttattcatggagagtaattagtttcaata
taaggtaatacgataataaagtgcactctcctccattggttatagcctcc
ctctgtatccgagcctgagCCCGGCTGCTTTATTAAATCTACGGTGAAAA
AGCGCTCAAGGGTTTCTCGTGCAAGTGTGTCTGATTTAGAATTCGACTAT
TCCGCCATGTGGATTTCTATTTAACCTTAGATTTTCAAAcgtttgaattt
caaaacattcgattccgGTAGGTCGTCATTCAGGATGAGAAAACATGACG
GACTAGTCAGCTCAAAATTTTGGCACATTTCCCTTATTATAGAAAGCCCA
ATCCAGTCAAGGAGTTATAAACTGTAATTATATGgctgattacatttagc
ttagaaaTGTAAGGGAGGAGCGGGGTGATTAATCCGTAATAGCTCTGCTG
TAATCACCCCTCCTcgaaaagagaaaaaggaaattttcgaaGAAATGCCT
TACGTTCAAAAACTAATCGATTTCATAGTTGCGCAATTCGAATATTTTAA
CTGTTTGGTTGATCATAGTGGATAAGTGACACTTGAGTGTCCCACNTCGA
ATATTTTAACTGTTTGGTTGTTCATAGTGGATAAGTGACACTTGAGAGTC
CCATTTGAGTGTCCCGCtagagcgtcccaccgtcccacatCCCACTTATC
TAGTTTGCCAGTTGGTTGTCATTCGCTTCTATTCAGTGACAAAAGTAAAA
AAGGAAGATTGGAAAAATATGTGAACAAAAGTAAGTATTTACactgaaag
tttcaagctaATGGCCTTAACGTGTCTAGAAACTCCCGTaactttctgtt
ttcttttattACCAGAGGAAAGAAGTACATCGAGTTACCTTACACTGTAA
AAGGGATGGATATCAGCTTCTCTGGTATCCTCTCATTTATTGAGGTATGA
ATAAACCGTTTTGTTTTGTCCCTTACGAATTTGTTTTTCCCAGTTTGTTA
GAATAGTTATACAGTGCGCCCCAAAAAAACGGAAAAATTGtcatataaag
taaaatcctcataatttaggccaaattttatgactcgTATACTTAATATT
TCGATCTCCAAAATTTGTTCAATCATCTTGGAAATCTATTGATTTCAATT
ATTCCAAGACCAGCTTAGATAAGGAGTTTTGAGGATTTGACTTTATATTT
GGCCGTTTTTTTCAGGACACGCTGTATGTAAGTTCCAATTAAAAGGTCCG
CAAATTGGAGAGTAGACTGTGCAGTAGAGATCCTTCTGTTGAAAGATTCT
TTATACAGATGGATGTGTGTTGTCTTTAAATCCAATCTTCCTCATGTCTG
GAAATGAAGCTCTCGTCCACGAACGAGAGTCCCTTTACCCTATTCTCGAA
ACAAATTTCGATGTTTCTTTCATACTATTTAATAATTtaatggagtctcc
ataactcgaacacgtagGGGAAAACACAAAGTTCTTCAAGTTAATGTGAT
ATCGAGTTAtgaagtaaggtttataaggcaatGTTAATTAAAGGggccat
aaaacttgttcgagttaaggagacattcaagttatagaggttcgactTGA
AGAGATTCAGCTATATTTATAGGGTTTGTTAAGTGAaaggaccataaaac
ttgttcgagttatagaggttcaagttaAAGAGATTGTACTGTACTGTACT
GTATATCGTTTTGTTCAGGCAGCAGCTGACAAGATGATGAAACGTGGAGA
ATGCACTGCTGAAGATCTTTGTTTTTCACTCCAAGAAACTTTATTTGCTA
TGCTCATTGAAATTACTGGTGAGGTTCGATGAACAGTCGGTACAAAATAA
TTTGATCACCTTAAGGAAACTTATTAAATaatttgctcactcgccaaaat
aagttcccgccaaaatcaatttttttgtttttttgcctaaATGAACCCTg
aaattcaccaaaataaggcaaaatagaacgctgtcattcgccaaaattag
ttcccgccaaaatttgaaaatttcgccattcgccaaaataagttcccgcc
aaaattaatttcttttaggatttttgctgcccgccaaaattagttcccgc
caaaattagttcccttaaggtaatccTTCTCAAATTTGTGGTTTTGAGAA
TTACTAATACAAATCTGAATTGTTGTAACAAAGATAATAAAAAGTTTGAA
GGGTCATGATGTCACATAGACTATCCTATCGTCGACAGAAGGCCACTAAA
ATGGGAATAATTCAGGAGAcggaataaatttgaaaatgaagttcATCCCG
GGGCCGAAAAGCAATGGCTTCCGCCATTATTTTTTTCCGTAAACCGCCGT
GTTGGCTGTAAACTTTGTTCATATATCTAtttcccgcgtttactatcCTT
CTATCGGACGAAAGCATCGTGTAGATATAACAGCAAAAATTGAGATTTCT
GTGGTTTTTTTTTGTCCTGAAgaatgctttttaaaattttgcaagttttt
cctttcattttttctttacacTAGAGCGAGCAATGGCGCACTGTGGATCA
AACGAAGTTCTTATTGTGGGTGGTGTTGGATGTAAGGAGTTCATACTCAT
TCATACGCAATTTCCTTACAAGCCCTACTAAAGATATCTATCATATTCTT
TTTACACACTAGATAGGCTAACTGCTTCCACACCCTtggaagtgtgtcca
gttttagTCCGCCATGTTATTTTCCAATTTACCTTcgattttcgaacgtt
cgaatttcaaaacattcgaatcgtgCTGTTGAtgaccagaattgaaaaca
agacgGCGGATTAGTCAGCTCTAAATCTGGACACGCTTCTTGTATACGGG
TTGCTGTAAATCAgaacttttaccgtcctcgattttgcggggcggaattg
cgggttattccaaatggcttcagtcactctaccgtcatcaaaagtgcaaa
tacataaactcgctattacaTCTAAAGTAGGGGTATAGTGTAAATGGCaa
tgttttttatataatttctaTGTTCGTAAATCTTATTTTTTGTAGGCAAC
AAGCGACTACAAGAGATGATGGGTATGCAAAACTTTTTATCATCCTTTTc
tcaatgaagatgaagatgttTGATATTTTCGTAGGCTTATGAGAGAGTTA
ATGTAAAATTCCTACATTTgccaaaaattgctaaaaaacaGATTTCACCA
TCCACAGCCGGACCAGGATAATTTGTCAatctcaatgttttgattccTCT
TTGAGTATGACGAACAGACTTTATTTGCAAATTGAACCCGTCATCGCTCG
ATAAGATCGTTTCTTTTGCAAACTTTGTGCTCGACATCCTCACAGTGCCG
TCCTTTAAACTACCTATGTGTATCTTTACATTATCAGGTAAAATGGCTGA
AGAGAGAAACGGAAAACTATTTGCCACGGATGAAAGGTAAaccttgaaaa
attgaaattgcttAAACTTTACACCAATCTGAACCGATCATGAATTTATT
GTGATACTAATACACAGgtagcaaaattaaagtctgaagacaaatcacgc
tttaaCTCGAAATCTTTAAATGCTTGTTACATaatattattatccatata
gcggtcattaagtaagtctatcgggcgaataatcaaactgcgcgggcaga
aaagaacaacaacgacctcaaactgaacgctattgttatatttatttctg
attggtcggAATTTATCAACAAGTAAAACAAGTAACATGGGAAAAcaatc
acgtgatattattatattattttgcaacccgtgtattcatACCGTTGGGA
AATCAGTTAAGTTTGTCAAAATTCTTACAACTCTTGACGAAAATCCTTTC
AAGCAGGAAAAATTGATAAGCATGATAAATTTGTGCAGATTTGttactat
ttttagattcgtCGCGTTGTGATGCTATTTTTTTCGAATCGGTACGAGTT
ATATAAAATACGAGAAAGAATATCAAATTGTTCATTTTCGTTTAGGTTTT
GTATCGACAATGGAGTGATGATTGCTCAAGCAGGCTGGGAAATGTTTCGT
TCAGGTCACGTGACCCCTATGGATGACACGTGGTGCACTCAGAGGTGAGG
AGAGAAATTATTCCTCTAAATTTCGGAGAGTAGAAAGTGATTGTTTTTCC
TGAGTCACTATCCatgtactctgtaccagagtgaaTCTCGTGTTCATCGT
TTTGGagtacaaaataaaaattcccGTActgagacctctgcgatgaagta
tgatttataaatcatcatcatcatcatccttcgatctAGGTCCGAGagga
aacaaacaataaccctCTCTCCACAATTCACGATCAGCCATTACTGTTCC
GAGCTCTAGCGTTTCCAGGCCTGTTTCCCGCTTTAGAGTGTCGAGAAACA
TTCGTTTCCTCGAACGTTTAGGACCGACAGGACACCAAAGTAAAAGATCT
GAGATTATTTCATGTTTTGAACGATGAtctataaatagcaacactctCGT
CGTCTCCTCCGTCTGGACTCAAatgcagcggtcggtttgaaaaaactcaa
atcagaaaaaacgATGACAACAAACCCTCTATGGCAATgacttttgaaat
tagctgtaaACATGGGAATAGTGCTTGAAAAGTTGTGCACGTGGGAGGGA
GGCCTTATTAAATGATTGCCTTAGGAGTGTTGTTTGGAAAGATTCTTGAA
TTCATTGAAGGAAGCGGACaggcgaaatacaacgacgtggttacTAGTCT
AGTTTGTAAATTGATTAAAAATGGCTCTGTTTCCTTTGTCCAAATTATGA
TTTCAAATGTTGAACCTGTTTTTCTTATGCTGTGTGTCAGCTAAAACCAA
TAACAGTGCTCAATGTTAATGAAAACAGAGCTTTatactagtttgagtaa
agaaaacgattaAGTTTAATTTCATACTCTACCTGTTCTTCTTGTGTTTT
TGCTAAACATTCTCCCATTCTTTAAACCTTTTAGATATCGAACTGACGAA
GTCGATGTTCTTTGGCGTGATTGAAACAATTGAGAAGGTCAGATATAAGG
ATGTATCCAGAACCTGTTTGTCCAGTAAGGATGTTATGTAAAAATATGGA
TTAAGAAATGTCTAGAAACTGCTCATATACCCTGATACATCGTATTGGCC
ATGAGGATAATTGACTAAGAATACAATCCAATGATTGCTACTTGCTGTAT
AATGAGACTTTATTAAAGCATGAATGATAGCTTTTGGTGTCGGTGGGTGG
TTTGAGAGTATAACTTTCCATGCAAGTTCTGAGGAAGCAATCTCTATGTT
TTCTAACAGAAAGATGTAAATAGACGCACAAGTTGTATGTTACGATGCAT
GCA

Coding sequence (CDS) from alignment at scaffold_52:25070..34122+

>TCONS_00070288 ID=TCONS_00070288|Name=TCONS_00070288|organism=Clytia hemisphaerica|type=CDS|length=996bp|location=Sequence derived from alignment at scaffold_52:25070..34122+ (Clytia hemisphaerica)
ATAGGATTTGAAGGAAGTGCAAATAAGATTGGGATTGGTATCATTGAAGA
TGGAAATGTTTTATCAAACGTTCGACACACTTATATCACACCTCCTGGAA
AagGATTTCTACCACGTGACACGGCTAAACATCATCAAGAAcatatttta
gatattttacaaaaAGCACTGGAAGATGCCAATATCAAACCAGAACAAAT
CGATTGTGTTTGCTTTACAAAGGgACCAGGTATGGGAGCACCTCTGGTCT
CAACGGCTGTGGTTGCACGCACTGTAGCTCAGTTATGGGATAAACCTCTG
GTTGGTGTCAATCATTGTGTTGGACATATTGAAATGGGGCGACTCGTAAC
GGGAGCGCAAAATCCAGTCGTTTTGTACGTCAGTGGTGGTAATACGCAGG
TGATCGCATACTCACAACAGAAATATCGGATTTTTGGTGAAACTATAGAT
ATTGCTATTGGTAACTGTTTGGATCGATTCGCTCGAGTATTAAAgTTATC
AAACGATCCAAGCCCTGGTTACAACATTGAACAAATGGCCAAAAAAGGAA
AGAAGTACATCGAGTTACCTTACACTGTAAAAGGGATGGATATCAGCTTC
TCTGGTATCCTCTCATTTATTGAGGCAGCAGCTGACAAGATGATGAAACG
TGGAGAATGCACTGCTGAAGATCTTTGTTTTTCACTCCAAGAAACTTTAT
TTGCTATGCTCATTGAAATTACTGAGCGAGCAATGGCGCACTGTGGATCA
AACGAAGTTCTTATTGTGGGTGGTGTTGGATGCAACAAGCGACTACAAGA
GATGATGGGTAAAATGGCTGAAGAGAGAAACGGAAAACTATTTGCCACGG
ATGAAAGGTTTTGTATCGACAATGGAGTGATGATTGCTCAAGCAGGCTGG
GAAATGTTTCGTTCAGGTCACGTGACCCCTATGGATGACACGTGGTGCAC
TCAGAGATATCGAACTGACGAAGTCGATGTTCTTTGGCGTGATTGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_043771	XLOC_043771	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00070288-protein	TCONS_00070288-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_52	supercontig	scaffold_52:25070..34122 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
29.6602	25.9473	17.5293	13.6634	12.261	10.3325	27.588	28.8121	28.557	26.5459	25.9593	23.2257	20.0009	18.5754	25.3082	25.9778	37.396	36.2995	14.3285	18.1056	22.3761	23.073	25.1504	23.1636	19.8305	19.6173	12.6413	11.8629	14.1844	15.7458

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR017861	KAE1/TsaD
IPR000905	Gcp-like_dom
IPR017860	Peptidase_M22_CS
IPR034680	Kae1/OSGEP

Vocabulary: **Biological Process**
Term	Definition
GO:0002949	tRNA threonylcarbamoyladenosine modification

Vocabulary: **Cellular Component**
Term	Definition
GO:0000408	EKC/KEOPS complex

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002949	tRNA threonylcarbamoyladenosine modification
cellular_component	GO:0000408	EKC/KEOPS complex

Blast

[Close]

BLAST of TCONS_00070288 vs. Swiss-Prot (Human)
Match: OSGEP (Probable tRNA N6-adenosine threonylcarbamoyltransferase OS=Homo sapiens GN=OSGEP PE=1 SV=1)

HSP 1 Score: 561.607 bits (1446), Expect = 0.000e+0
Identity = 255/331 (77.04%), Postives = 292/331 (88.22%), Query Frame = 1

Query:    1 IGFEGSANKIGIGIIEDGNVLSNVRHTYITPPGKGFLPRDTAKHHQEHILDILQKALEDANIKPEQIDCVCFTKGPGMGAPLVSTAVVARTVAQLWDKPLVGVNHCVGHIEMGRLVTGAQNPVVLYVSGGNTQVIAYSQQKYRIFGETIDIAIGNCLDRFARVLKLSNDPSPGYNIEQMAKKGKKYIELPYTVKGMDISFSGILSFIEAAADKMMKRGECTAEDLCFSLQETLFAMLIEITERAMAHCGSNEVLIVGGVGCNKRLQEMMGKMAEERNGKLFATDERFCIDNGVMIAQAGWEMFRSGHVTPMDDTWCTQRYRTDEVDVLWRD 993
            +GFEGSANKIG+G++ DG VL+N R TY+TPPG GFLP DTA+HH+  ILD+LQ+AL ++ +  + IDC+ +TKGPGMGAPLVS AVVARTVAQLW+KPLVGVNHC+GHIEMGRL+TGA +P VLYVSGGNTQVIAYS+ +YRIFGETIDIA+GNCLDRFARVLK+SNDPSPGYNIEQMAK+GKK +ELPYTVKGMD+SFSGILSFIE  A +M+  GECT EDLCFSLQET+FAML+EITERAMAHCGS E LIVGGVGCN RLQEMM  M +ER  +LFATDERFCIDNG MIAQAGWEMFR+GH TP+ D+  TQRYRTDEV+V WRD
Sbjct:    5 LGFEGSANKIGVGVVRDGKVLANPRRTYVTPPGTGFLPGDTARHHRAVILDLLQEALTESGLTSQDIDCIAYTKGPGMGAPLVSVAVVARTVAQLWNKPLVGVNHCIGHIEMGRLITGATSPTVLYVSGGNTQVIAYSEHRYRIFGETIDIAVGNCLDRFARVLKISNDPSPGYNIEQMAKRGKKLVELPYTVKGMDVSFSGILSFIEDVAHRMLATGECTPEDLCFSLQETVFAMLVEITERAMAHCGSQEALIVGGVGCNVRLQEMMATMCQERGARLFATDERFCIDNGAMIAQAGWEMFRAGHRTPLSDSGVTQRYRTDEVEVTWRD 335

The following BLAST results are available for this feature:

BLAST of TCONS_00070288 vs. Swiss-Prot (Human)

BLAST of TCONS_00070288 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
OSGEP	0.000e+0	77.04	Probable tRNA N6-adenosine threonylcarbamoyltransf...	[more]

You are here

TCONS_00070288 (transcript) - C. hemisphaerica