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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070514 ID=TCONS_00070514|Name=TCONS_00070514|organism=Clytia hemisphaerica|type=transcript|length=2571bpRun BLAST on NCBI protein sequence of TCONS_00070514-protein >TCONS_00070514-protein ID=TCONS_00070514-protein|Name=TCONS_00070514-protein|organism=Clytia hemisphaerica|type=polypeptide|length=712bp MLTTPQEDNVEMKSMLNKLHNEYAIVVIGIGTKLTNDYLLSIANRGNRILRun BLAST on NCBI transcript from alignment at scaffold_56:242527..263995- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070514 ID=TCONS_00070514|Name=TCONS_00070514|organism=Clytia hemisphaerica|type=transcript|length=21469bp|location=Sequence derived from alignment at scaffold_56:242527..263995- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_56:242527..263995- >TCONS_00070514 ID=TCONS_00070514|Name=TCONS_00070514|organism=Clytia hemisphaerica|type=CDS|length=2136bp|location=Sequence derived from alignment at scaffold_56:242527..263995- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00070514 vs. Swiss-Prot (Human)
Match: CO6A6 (Collagen alpha-6(VI) chain OS=Homo sapiens GN=COL6A6 PE=1 SV=2) HSP 1 Score: 166.777 bits (421), Expect = 6.810e-42 Identity = 219/854 (25.64%), Postives = 379/854 (44.38%), Query Frame = 2
Query: 86 DIAFVYEIPNAKAATTFNYLRKIVGILNKDRTSSD----CNQISLIVAGKDLHVVQPLSCGEACSASAIKKLDLIERDLDDSYKTFTNEIRVREALETIGATIFSADKGSRVDAKKSIVLMLTTPQ--EDNVEMKSMLNKLHNEYAIVVIGIGTKLTNDYLLSIANRG--NRILKLRDLQELFPGKAAYKILVELLNDPDY------DRYKTLAEAPRPDLGCEFV--ADIAFLIDSSNSIRLEYLNQLQ-FVQFITASFGLKKNGTHAGVVVFSDIRPYSQLEIKFDQYYDLKPFLEHVERLPFYAYRTRIDLAFEIADKELFSKAGGMRDN-VPKVIFLITDGSQNPTIDRRAGLTFDPVAASQPLIDRGIQIFSIGVGNRSDNINYDELVKIARNENQVKIAETAADLASEQFVKE---LADITCRIIPTPPPKPSC-DVKVDVGFVLDSSGSL-RDDYSKEKQFLKTLAAAFGVSEEGARAGVITFSYDTEHSIKLNDYFNIVSFSEAVDKIPLMGHTTRIDKXEAVDKIQLMGHTTRIDKALRLTQSQMFSIANGGRPGVSKIVIVLTDGSQTQDVGAEDPGNVAEELRSQGYKVLAVGIGDGVNRTELAHITGEKSAVYTASSFDDL--ISPEFVGSMSKAGCEEAKKEVKPLCEVKVDVGFVLDSSGSLRND-YDKEKNFLKALAATFGVSEDGARAGVVTFSYDTEHSIKLNDHYDLFSFSDAVDKIPLMGHTTRIDKALRLTQSQMFSIANGGR--PGVSKIVIVLTDGSQTQDVGAEDPGNVAEELRSMGYKVLAVGIGSGVNSTELAHITGNKANVYSAVTFDELISQDFLGTVNKAGCDEAK 2563
D+ F+ ++ + F+YL+ G L + ++ D C ++ L+ + V+ LS G I K ++++ + S +T + A++ + +FSA GSR + + +L T + EDNV K+ +N I +GI ++ L IA+ + KL+ +L + L +L N + +R +TL GC ADI LID S S + ++++ F+ + F + + G V ++D LE + ++Y + + + +E + T A L KA R N VP + ++T+G +I + + L + I++++IG+ + NQ ++ E A + +V + L DI +++ + +C ++K D+ F++DSSGS+ +++SK K F+K L + + + + GV+ FS + +LN + + S A+D+ M H +G TT AL SQ FS G RP + K +I++TDG + QD+ ++P V LR +G + +VG+ G N T+L I+G V+ +FD L I + V + E + EV +DV FV+DSSGS+ D Y+ K+F+ L V ++ R G + ++ D E L+D + MG +T +AL + MF+ A G R GV +++IV+TDG ++ D A+ A+ LR G VLAVGI G N EL + G+ + TF L + V + C+ +K
Sbjct: 229 DVVFLLDMSINGSEENFDYLK---GFLEESVSALDIKENCMRVGLVAYSNETKVINSLSMG-------INKSEVLQHIQNLSPRT--GKAYTGAAIKKLRKEVFSARNGSRKNQGVPQIAVLVTHRDSEDNV-TKAAVNLRREGVTIFTLGI-EGASDTQLEKIASHPAEQYVSKLKTFADLAAHNQTF--LKKLRNQITHTVSVFSERTETLKS------GCVDTEEADIYLLIDGSGSTQATDFHEMKTFLSEVVGMFNIAPHKVRVGAVQYAD---SWDLEFEINKYSNKQDLGKAIENIRQMGGNTNTGAALNFT-LSLLQKAKKQRGNKVPCHLVVLTNGMSKDSI----------LEPANRLREEHIRVYAIGI----------------KEANQTQLREIAGEEKRVYYVHDFDALKDIRNQVVQEICTEEACKEMKADIMFLVDSSGSIGPENFSKMKTFMKNLVSKSQIGPDRVQIGVVQFSDINKEEFQLNRFMSQSDISNAIDQ---MAH---------------IGQTTLTGSALSFV-SQYFSPTKGARPNIRKFLILITDG-EAQDI-VKEPAVV---LRQEGVIIYSVGV-FGSNVTQLEEISGRPEMVFYVENFDILQRIEDDLVFGICSPREECKRIEV-------LDVVFVIDSSGSIDYDEYNIMKDFMIGLVKKADVGKNQVRFGALKYADDPEVLFYLDDFGTKLEVISVLQNDQAMGGSTYTAEALGFS-DHMFTEARGSRLNKGVPQVLIVITDG-ESHD--ADKLNATAKALRDKGILVLAVGI-DGANPVELLAMAGSSDKYFFVETFGGL--KGIFSDVTASVCNSSK 991 HSP 2 Score: 95.9005 bits (237), Expect = 6.821e-20 Identity = 136/520 (26.15%), Postives = 235/520 (45.19%), Query Frame = 2
Query: 383 FSADKGSRVDAKKSIVLMLTTPQEDNVEMKSMLNKLHNEYAIVV-IGI-GTKLTNDYLLSIANRGNRILKLRDLQELFPGKAAYKILVELLNDPDYDRYKTLAEAPRPDLGCEFVADIAFLIDSSNSIRLEYLNQLQ-FVQFITASFGLKKNGTHAGVVVFSDIRPYSQLEIKFDQYYDLKPFLEHVERLPFYAYRTRIDLAFEIADKELFSKAGGMRDN--VPKVIFLITDGSQNPTIDRRAGLTFDPVAASQPLIDRGIQIFSIGVGNRSDNINYDELVKIARNENQVKIAETAADLASEQFVKELADITCRIIPTPPPKPSCDV-KVDVGFVLDSSGSLR-DDYSKEKQFLKTLAAAFGVSEEGARAGVITFSYDTEHSIKLNDYFNIVSFSEAVDKIPLMGHTTRIDKXEAVDKIQLMGHTTRIDKALRLTQSQMFSIANGGR--PGVSKIVIVLTDGSQTQDVGAEDPGNVAEELRSQGYKVLAVGIGDGVNRTELAHITGEKSAVYTASSFDDL 1915
FS KG+R + +K ++L+ +D V+ +++ L E I+ +G+ G+ +T L I+ R + + + + IL + +D + E R + V D+ F+IDSS SI + N ++ F+ + + KN G + ++D F ++ L++ + + Y A +D +F++A G R N VP+V+ +ITDG + D+ A ++ L D+GI + ++G+ D N EL+ +A + ++ ET L +D+T + + K C++ KVD+ F++D S S++ +D+ K K+FL ++ F VS R G FS DT H + PL + ++ I+ + T I ALR + F G R G ++++VLTDG Q+QD A+ AE LR +G + +VGIGD V+ +L ITG T +FD+L
Sbjct: 712 FSPTKGARPNIRKFLILITDGEAQDIVKEPAVV--LRQEGVIIYSVGVFGSNVTQ--LEEISGRPEMVFYVEN----------FDILQRIEDDLVFGICSPREECKRIE-----VLDVVFVIDSSGSIDYDEYNIMKDFMIGLVKKADVGKNQVRFGALKYADDPEVLFYLDDFGTKLEVISVLQNDQAMGGSTYTAE---ALGFSD-HMFTEARGSRLNKGVPQVLIVITDGESHDA-DKLN-------ATAKALRDKGILVLAVGI----DGANPVELLAMAGSSDKYFFVETFGGLKGI-----FSDVTASVCNSS--KVDCEIDKVDLVFLMDGSTSIQPNDFKKMKEFLASVVQDFDVSLNRVRIGAAQFS-DTYHP-----------------EFPLGTFIGEKEISFQIENIKQIFGNTHIGAALREVE-HYFRPDMGSRINTGTPQVLLVLTDG-QSQDEVAQ----AAEALRHRGIDIYSVGIGD-VDDQQLIQITGTAEKKLTVHNFDEL 1164 HSP 3 Score: 94.3597 bits (233), Expect = 1.784e-19 Identity = 155/656 (23.63%), Postives = 273/656 (41.62%), Query Frame = 2
Query: 701 DLGCEFVADIAFLIDSSNSIRLEYLNQLQ-FVQFITASFGLKKNGTHAGVVVFSDIRPYSQLEIKFDQYYDLKPFLEHVER-LPFYAYRTRIDLAFEIADKELFSKAGGMRD--NVPKVIFLITDGSQNPTIDRRAGLTFDPVAASQPLIDRGIQIFSIGVGNRSDNINYDELVKIARNENQVKIAETAADLASEQFVKELADITCRIIPTPPPK------PSCD--VKVDVGFVLDSS--GSLRDDYSKEKQFLKTLAAAFGVSEEGARAGVITFSYDTEHSIKLNDYFNIVSFSEAVDKIPLMGHTTRIDKXEAVDKIQLMGHTT---RIDKALRLTQSQMFSIANGGRP--GVSKIVIVLTDGSQTQDVGAEDPGNVAEELRSQGYKVLAVGIGDGVNRTELAHITGEKSAVYTA--SSFDDLISPE--FVGSMSK------AGCEEAKKEVKPLC--EVKVDVGFVLDSSGSLR-NDYDKEKNFLKALAATFGVSEDGARAGVVTFSYDTEHSIKLNDHYDLFSFSDAVDKIPLMGHTTRIDKALRLTQSQMFSIANGGRPGVSKIVIVLTDGSQTQDVGAEDPGNVAEELRSMGYKVLAVGIGSGVNSTELAHITGNKANVYSAVTFDELISQDFLGTVNKAGC-DEAKKE 2569
D G E+ AD+ FL+DSS+ + + ++ F+ + +S ++ + + +SD + +S E + P L H+ + F +I A + A + FS RD P ++ ++ ++ AS+ L G++I S+GV S+ + L +A ++ + T DL+ F + + I +I +C DV F+LD S GS +++ K FL+ +A + E R G++ +S +T+ N +S MG I+K E + IQ + T A++ + ++FS NG R GV +I +++T +V A LR +G + +GI +G + T+L I + Y + +F DL + F+ + + E + +K C + D+ ++D SGS + D+ + K FL + F ++ R G V ++ + ++N + + A++ I MG T AL T S + V ++VLT+G + +P N LR +V A+GI N T+L I G + VY FD L +D V + C +EA KE
Sbjct: 20 DSGPEY-ADVVFLVDSSDRLGSKSFPFVKMFITKMISSLPIEADKYRVALAQYSD-KLHS--EFHLSTFKGRSPMLNHLRKNFGFIGGSLQIGKALQEAHRTYFSAPANGRDKKQFPPILVVLASSESEDNVEE----------ASKALRKDGVKIISVGVQKASE----ENLKAMATSQFHFNL-RTVRDLS--MFSQNMTHIIKDVIKYKEGAVDDIFVEACQGPSMADVVFLLDMSINGS-EENFDYLKGFLEESVSALDIKENCMRVGLVAYSNETK-------VINSLS----------MG----INKSEVLQHIQNLSPRTGKAYTGAAIKKLRKEVFSARNGSRKNQGVPQIAVLVTHRDSEDNV-----TKAAVNLRREGVTIFTLGI-EGASDTQLEKIASHPAEQYVSKLKTFADLAAHNQTFLKKLRNQITHTVSVFSERTETLKSGCVDTEEADIYLLIDGSGSTQATDFHEMKTFLSEVVGMFNIAPHKVRVGAVQYADSWDLEFEINKYSNKQDLGKAIENIRQMGGNTNTGAALNFTLSLLQKAKKQRGNKVPCHLVVLTNGMSKDSI--LEPAN---RLREEHIRVYAIGIKE-ANQTQLREIAGEEKRVYYVHDFDAL--KDIRNQVVQEICTEEACKE 618 The following BLAST results are available for this feature:
BLAST of TCONS_00070514 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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