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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070525 ID=TCONS_00070525|Name=TCONS_00070525|organism=Clytia hemisphaerica|type=transcript|length=3486bpRun BLAST on NCBI protein sequence of TCONS_00070525-protein >TCONS_00070525-protein ID=TCONS_00070525-protein|Name=TCONS_00070525-protein|organism=Clytia hemisphaerica|type=polypeptide|length=842bp ACASHEMLNTVTTTITWTTLVDGNLKIITQAVITGPVTKAELYAYKKNGYRun BLAST on NCBI transcript from alignment at scaffold_56:542404..602597- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070525 ID=TCONS_00070525|Name=TCONS_00070525|organism=Clytia hemisphaerica|type=transcript|length=60194bp|location=Sequence derived from alignment at scaffold_56:542404..602597- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_56:542404..602597- >TCONS_00070525 ID=TCONS_00070525|Name=TCONS_00070525|organism=Clytia hemisphaerica|type=CDS|length=2529bp|location=Sequence derived from alignment at scaffold_56:542404..602597- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00070525 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 111.309 bits (277), Expect = 2.603e-24 Identity = 63/171 (36.84%), Postives = 86/171 (50.29%), Query Frame = 1
Query: 1801 FGGWSMFSPCTATCGTATKIRYRI---LVSEDFGI----KEFDTQPCNLTNCPIDGQWSEWPGYGRCNVSCGNGMKNRTRECNNPRKQYGGRDCMGVPIEFQRCGDPPICPVHGGWTQYEKFSDCSAPCRYGNDTVTETWVRHCTDPTPDLGGRNCDGSKWKYVPCQVEEC 2292
F WS + C+ TCG + R R+ + + G + + + C CP+DG WSEW + C SCG G + RTR CNNP Q+GGR C G +E C P CPVHG W+ ++ + CS C G T+T R C +P P GG CDG++ + C C
Sbjct: 4532 FSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRP-CPVHGAWSAWQPWGTCSESCGKG----TQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNC 4697 HSP 2 Score: 103.99 bits (258), Expect = 4.486e-22 Identity = 68/191 (35.60%), Postives = 90/191 (47.12%), Query Frame = 1
Query: 1750 NADHKRVCNCVPTGENTFGGWSMFSP---CTATCGTATKIRYRILVSE--DFGIK-----EFDTQPCNLTNCPIDGQWSEWPGYGRCNVSCGNGMKNRTRECNNPRKQYGGRDCMGVPIEFQRCGDPPICPVHGGWTQYEKFSDCSAPCRYGNDTVTETWVRHCTDPTPDLGGRNCDGSKWKYVPCQVEEC 2292
NA +CN P G WS + P C+ +CG T+ R R+ + FG E Q CN NCPI G+W+ W + C+VSCG G + RTR C++P QYGGR C G ++ C P CP HG W+ + + CS C G R C +P P GGR C G + C + C
Sbjct: 4628 NAVEIIMCNIRPC--PVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDP-CPTHGNWSPWSGWGTCSRTCNGGQ----MRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMC 4811 HSP 3 Score: 100.523 bits (249), Expect = 5.097e-21 Identity = 60/168 (35.71%), Postives = 81/168 (48.21%), Query Frame = 1
Query: 1810 WSMFSPCTATCGTATKIRYRIL--VSEDFGIK-----EFDTQPCNLTNCPIDGQWSEWPGYGRCNVSCGNGMKNRTRECNNPRKQYGGRDCMGVPIEFQRCGDPPICPVHGGWTQYEKFSDCSAPCRYGNDTVTETWVRHCTDPTPDLGGRNCDGSKWKYVPCQVEEC 2292
WS++ CT +CG + R R S G + + CN+ CP+ G WS W +G C+ SCG G + R R CNNP +GG C G + Q C + CP+HG W + +S CS C G T R C+DP P GGR C+GS + C + C
Sbjct: 4592 WSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERN-CPIHGKWATWASWSACSVSCGGGARQRT----RGCSDPVPQYGGRKCEGSDVQSDFCNSDPC 4754 HSP 4 Score: 86.6557 bits (213), Expect = 8.238e-17 Identity = 41/118 (34.75%), Postives = 67/118 (56.78%), Query Frame = 1
Query: 1939 IDGQWSEWPGYGRCNVSCGNGMKNRTRECNNPRKQYGGRDCMGVPIEFQRCGDPPICPVHGGWTQYEKFSDCSAPCRYGNDTVTETWVRHCTDPTPDLGGRNCDGSKWKYVPCQVEEC 2292
+ G +S+W + C+V+CG G++ R+R CN P GG+ C G +E + C + P CPV G W+++ + +C+ C GN T T T C +P+ GGR C+G+ + + C + C
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKP-CPVDGSWSEWSLWEECTRSCGRGNQTRTRT----CNNPSVQHGGRPCEGNAVEIIMCNIRPC 4640 The following BLAST results are available for this feature:
BLAST of TCONS_00070525 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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