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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070622 ID=TCONS_00070622|Name=TCONS_00070622|organism=Clytia hemisphaerica|type=transcript|length=2223bpRun BLAST on NCBI protein sequence of TCONS_00070622-protein >TCONS_00070622-protein ID=TCONS_00070622-protein|Name=TCONS_00070622-protein|organism=Clytia hemisphaerica|type=polypeptide|length=548bp MLKLIILLVAISCVFGGKPTLSDNRGLRDERLKYNFRVKDYVFGSLFPKPRun BLAST on NCBI transcript from alignment at scaffold_57:156212..171648+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070622 ID=TCONS_00070622|Name=TCONS_00070622|organism=Clytia hemisphaerica|type=transcript|length=15437bp|location=Sequence derived from alignment at scaffold_57:156212..171648+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_57:156212..171648+ >TCONS_00070622 ID=TCONS_00070622|Name=TCONS_00070622|organism=Clytia hemisphaerica|type=CDS|length=1647bp|location=Sequence derived from alignment at scaffold_57:156212..171648+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00070622 vs. Swiss-Prot (Human)
Match: HEXB (Beta-hexosaminidase subunit beta OS=Homo sapiens GN=HEXB PE=1 SV=3) HSP 1 Score: 482.641 bits (1241), Expect = 1.882e-161 Identity = 245/503 (48.71%), Postives = 325/503 (64.61%), Query Frame = 3
Query: 165 SLFPKPQEETKDATKLMSLDPEKFSFTKT-----GEDSDVIQAALVRYKMIAFPDAQVGGADSNY---PQITGLNVHIIQPYKAMDF---KMDESYNLVIAAPMASIEANTVWGALRGLETFSQAVYQNISDKYYVNSNKIHDFPRFHHRGFLIDTSRHYLSVQTIEQFIDALAYSKYNVLHWHIVDETSFPFVSKTFPSLSEMGSFNSTTHVYNPEDVQRVIEYARMRGVRVLPEFDTPGHSDSW-YSIENLLTKCYSSGKPNGNTGPIDPTVESNYEFLKNFFKEVAEVFPDAYLHLGGDEVSFSCWESNPNIAKWMADHDMGKNYSLLEQYYEQRLLDIVGALGKNYVIWQEVVDNQVKVKPDTVVNVWK-GGWQNEMAKVTKLGYRTILSSPWYLNYISYAADWPNYYKADPQSFDGTQEQLDLVLGGTACMWGEWVDATNLLARTWARALAVGERLWSAKTVTDVSDAGLRMWEHRCRYLRRGIPAENVISSNYCRHE 1634
+L+P P K L+ L PE F + + G +++ A RY F + + + Q+ L V I + F DESY L++ P+A ++AN VWGALRGLETFSQ VYQ+ + +N + I D PRF HRG LIDTSRHYL V+ I + +DA+A++K+NVLHWHIVD+ SFP+ S TFP LS GS+ S +HVY P DV+ VIEYAR+RG+RVLPEFDTPGH+ SW ++LLT CYS + GPI+PT+ + Y FL FFKE++EVFPD ++HLGGDEV F CWESNP I +M G ++ LE +Y Q++LDI+ + K ++WQEV D++ K+ P T+V VWK + E+++VT G+ ILS+PWYL+ ISY DW YYK +P F GTQ+Q L +GG AC+WGE+VDATNL R W RA AVGERLWS+K V D+ DA R+ HRCR + RGI A+ + + YC HE
Sbjct: 55 ALWPLPLS-VKMTPNLLHLAPENFYISHSPNSTAGPSCTLLEEAFRRYHGYIFGFYKWHHEPAEFQAKTQVQQLLVSITLQSECDAFPNISSDESYTLLVKEPVAVLKANRVWGALRGLETFSQLVYQDSYGTFTINESTIIDSPRFSHRGILIDTSRHYLPVKIILKTLDAMAFNKFNVLHWHIVDDQSFPYQSITFPELSNKGSY-SLSHVYTPNDVRMVIEYARLRGIRVLPEFDTPGHTLSWGKGQKDLLTPCYSRQNKLDSFGPINPTLNTTYSFLTTFFKEISEVFPDQFIHLGGDEVEFKCWESNPKIQDFMRQKGFGTDFKKLESFYIQKVLDIIATINKGSIVWQEVFDDKAKLAPGTIVEVWKDSAYPEELSRVTASGFPVILSAPWYLDLISYGQDWRKYYKVEPLDFGGTQKQKQLFIGGEACLWGEYVDATNLTPRLWPRASAVGERLWSSKDVRDMDDAYDRLTRHRCRMVERGIAAQP-LYAGYCNHE 554 The following BLAST results are available for this feature:
BLAST of TCONS_00070622 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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