TCONS_00070650 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070650
Unique NameTCONS_00070650
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1990

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070650 ID=TCONS_00070650|Name=TCONS_00070650|organism=Clytia hemisphaerica|type=transcript|length=1990bp
cttcagtcactctaccgtcctcaaaagtgtaaatacataaactcgctatt
agcAGAATAGTAGTCAGTATAATTTAATTAAAATCTGAATAACTGAATAA
TAGGCCTGCCCCAAAAACACTGTTTCAAAATGGTGTTCCCTAACGATATA
CTGGAAGCCGTGGGAATATTTATTGAAATAAATGACATCTGCATTTCGCA
TAAActaatattcaataaatttggAGTAAGAAataaacatcaaaatcaaa
tcaaaaaggaGTAAATGAAACAAGCCTAATCAAGATTCTCAAGACAACAT
AGATGATTTAAATTAGGTCTGGGATTAATAAAGCTGAGTATTCAATAGTT
AAAAGAAACAAACAGTCAACTTTCTCTTATTCGATCTTCTGTAGTTCAAA
CCTTTCTGTGATTCGATCTAAAACATAGGTCCCCTcaactggaaaatttt
tttacataCAGCTGACTCTCTTTTATTCGATTTACAAGGGAaagagaatt
ttcttcgaattagagaaccaTTTGAATtagtactagttatcgcatgactt
cgagtgcaatacgagaaatattttacaagttccgagatttttccgtaata
ttttaaaatatcggtaaaatatCGGAACGAGAtttttctaattcgaagaa
aattctcttTCCCTTgtaaatcgaattagagagagtcaactgtatgtaaa
aaaattgtacaaaagCACAATATTTCTGCTATACAGATAGGAGGTCAGAA
GAGACTAATGGTTTCGGGAAATGCGAATTAAAAGGCTATGGTTAACGGTT
TCTGTTTTGGTCCAAAACGCCAGTTGGTTAGCAGTGACGTAAACCAATAG
AAGCTAGAATAGCtttatttcgtttcggagcgaaataGAACCCTAGCGTG
TGAACGTGTTCTTATATTCATCCTATAATTTTATCCCAATTATTATCAAT
GGTTGAATATTCTTCTTCGGATTCTTCTTCTNTTCATCCTATAATTTTAT
CCCAATTATTATCAATGGTTGCATATTCTTCCTCAGATTCTTCTTCCTCA
GATCCACTTATCCATTCTTCCTCCTCATCTTCAGCAGCTTCAACTACCTC
AACTCTGGCTGGTGCTTTCTCCTGTAAAACTTGCAAAATCTGTTGATGTT
CCTCATGGCTTTTCAGATGCTTGTCAAGCTCCCCTTTCCGTGAAAACTGT
GTACCACATTCCTTACATTGAATTGGATTAATGCCTTTATGTACTCTCTG
TATATGTAACTTCAGATCATTTTTCTGTGAATAatttttaccacattctt
gacatttaaaAGGTTGAAGCCCACGGTGAGTGATATCTATATGTGCTATA
AGACGTGATCTATGTAAAAATGACTTCCCACACTCGGTACATACATGTGG
CTTATTTCCCGAATGAGACCGTTGATGTTGTTTGAGACCATACTTTCGCC
CAAAACATTTGCCACACTCGTCGCATTGAAAAGGCTTCAGACCTTTATGG
ACTGTATCTACATGCACAGCAAGTCTATaatgatttccaaaaattttacc
acactcctcgcactttttgttttttggtaTACGACCAATaggtttaaaaa
caaacttattCTTTTGTTCTTCATCTTCAAGTTCAACTAGTCTTGGTAAA
TTATCCATATCAATTTCACACGTTCCAACTCGTTTGCCTTCTTTAGTAAG
CTCAaatgatattttgattggaGTCTTTGAATCTGAATCTTCACTCACTG
TATTTATCCCGATATTCTCAATTCTATAATTCatcttgactttttgaatt
cttATCTTTATcctagaaaaaaatgaaatgggAAAATGTATCATCATATA
TTATAATCATTGGTAGAGCGGTAAACCAAAAGATGTATCGTTACATATTA
TCCCACTTGATATTATAGAACTGACTTGTAATTTCAACAGGGAGTTAaat
ccatgatatgcaccactacgatgtcttctgacattacatc
Run BLAST on NCBI

transcript from alignment at scaffold_57:57744..59733-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070650 ID=TCONS_00070650|Name=TCONS_00070650|organism=Clytia hemisphaerica|type=transcript|length=1990bp|location=Sequence derived from alignment at scaffold_57:57744..59733- (Clytia hemisphaerica)
CTTCAGTCACTCTACCGTCCTCAAAAGTGTAAATACATAAACTCGCTATT
AGCAGAATAGTAGTCAGTATAATTTAATTAAAATCTGAATAACTGAATAA
TAGGCCTGCCCCAAAAACACTGTTTCAAAATGGTGTTCCCTAACGATATA
CTGGAAGCCGTGGGAATATTTATTGAAATAAATGACATCTGCATTTCGCA
TAAACTAATATTCAATAAATTTGGAGTAAGAAATAAACATCAAAATCAAA
TCAAAAAGGAGTAAATGAAACAAGCCTAATCAAGATTCTCAAGACAACAT
AGATGATTTAAATTAGGTCTGGGATTAATAAAGCTGAGTATTCAATAGTT
AAAAGAAACAAACAGTCAACTTTCTCTTATTCGATCTTCTGTAGTTCAAA
CCTTTCTGTGATTCGATCTAAAACATAGGTCCCCTCAACTGGAAAATTTT
TTTACATACAGCTGACTCTCTTTTATTCGATTTACAAGGGAAAGAGAATT
TTCTTCGAATTAGAGAACCATTTGAATTAGTACTAGTTATCGCATGACTT
CGAGTGCAATACGAGAAATATTTTACAAGTTCCGAGATTTTTCCGTAATA
TTTTAAAATATCGGTAAAATATCGGAACGAGATTTTTCTAATTCGAAGAA
AATTCTCTTTCCCTTGTAAATCGAATTAGAGAGAGTCAACTGTATGTAAA
AAAATTGTACAAAAGCACAATATTTCTGCTATACAGATAGGAGGTCAGAA
GAGACTAATGGTTTCGGGAAATGCGAATTAAAAGGCTATGGTTAACGGTT
TCTGTTTTGGTCCAAAACGCCAGTTGGTTAGCAGTGACGTAAACCAATAG
AAGCTAGAATAGCTTTATTTCGTTTCGGAGCGAAATAGAACCCTAGCGTG
TGAACGTGTTCTTATATTCATCCTATAATTTTATCCCAATTATTATCAAT
GGTTGAATATTCTTCTTCGGATTCTTCTTCTNTTCATCCTATAATTTTAT
CCCAATTATTATCAATGGTTGCATATTCTTCCTCAGATTCTTCTTCCTCA
GATCCACTTATCCATTCTTCCTCCTCATCTTCAGCAGCTTCAACTACCTC
AACTCTGGCTGGTGCTTTCTCCTGTAAAACTTGCAAAATCTGTTGATGTT
CCTCATGGCTTTTCAGATGCTTGTCAAGCTCCCCTTTCCGTGAAAACTGT
GTACCACATTCCTTACATTGAATTGGATTAATGCCTTTATGTACTCTCTG
TATATGTAACTTCAGATCATTTTTCTGTGAATAATTTTTACCACATTCTT
GACATTTAAAAGGTTGAAGCCCACGGTGAGTGATATCTATATGTGCTATA
AGACGTGATCTATGTAAAAATGACTTCCCACACTCGGTACATACATGTGG
CTTATTTCCCGAATGAGACCGTTGATGTTGTTTGAGACCATACTTTCGCC
CAAAACATTTGCCACACTCGTCGCATTGAAAAGGCTTCAGACCTTTATGG
ACTGTATCTACATGCACAGCAAGTCTATAATGATTTCCAAAAATTTTACC
ACACTCCTCGCACTTTTTGTTTTTTGGTATACGACCAATAGGTTTAAAAA
CAAACTTATTCTTTTGTTCTTCATCTTCAAGTTCAACTAGTCTTGGTAAA
TTATCCATATCAATTTCACACGTTCCAACTCGTTTGCCTTCTTTAGTAAG
CTCAAATGATATTTTGATTGGAGTCTTTGAATCTGAATCTTCACTCACTG
TATTTATCCCGATATTCTCAATTCTATAATTCATCTTGACTTTTTGAATT
CTTATCTTTATCCTAGAAAAAAATGAAATGGGAAAATGTATCATCATATA
TTATAATCATTGGTAGAGCGGTAAACCAAAAGATGTATCGTTACATATTA
TCCCACTTGATATTATAGAACTGACTTGTAATTTCAACAGGGAGTTAAAT
CCATGATATGCACCACTACGATGTCTTCTGACATTACATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043957XLOC_043957Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070650-exon-scaffold_57-1575043694:57744..59733TCONS_00070650-exon-scaffold_57-1575043694:57744..59733Clytia hemisphaericaexon
TCONS_00070650-exon-scaffold_57-1510915933:57744..59733TCONS_00070650-exon-scaffold_57-1510915933:57744..59733Clytia hemisphaericaexon
TCONS_00070650-exon-scaffold_57-1491911889:57744..59733TCONS_00070650-exon-scaffold_57-1491911889:57744..59733Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_57supercontigscaffold_57:57744..59733 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.5997	14.5169	11.99	11.7936	11.8707	7.40447	8.06019	8.9077	5.20477	4.28158	5.04492	3.84544	4.20652	4.17903	4.64452	4.4116	4.77105	5.37797	2.87124	2.4155	4.85314	3.85139	17.0041	15.2509	5.82263	6.39994	2.54174	2.349	9.10708	9.39263
Blast
[Close]
BLAST of TCONS_00070650 vs. Swiss-Prot (Human)
Match: ZFP1 (Zinc finger protein 1 homolog OS=Homo sapiens GN=ZFP1 PE=1 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 1.203e-33
Identity = 67/154 (43.51%), Postives = 94/154 (61.04%), Query Frame = -3 
Query: 1155 QKNKFVFKPIGRIPKNKKCEECGKIFGNHYRLAVHVDTVHKGLKPFQCDECGKCFGRKYGLKQHQRSHSGNKPHVCTECGKSFLHRSRLIAHIDITHRGLQPFKCQECGKNYSQKNDLKLHIQRVHKGINPIQCKECGTQFSRKGELDKHLKSH 1616
            Q N  V +      K  +C ECGK F   + L  H   +H G +P++C+EC K F +K  L  HQ+ H+G K + C+ECGKSF+  S+LI H+  TH G +P++C ECGK +SQ++ L+LH+ R+H G  P +C ECG  FSRK  L  H + H
Sbjct:  252 QSNLIVHQRAHMEKKPYECSECGKTFAQKFELTTH-QRIHTGERPYECNECAKTFFKKSNLIIHQKIHTGEKRYECSECGKSFIQNSQLIIHMR-THTGEKPYECTECGKTFSQRSTLRLHL-RIHTGEKPYECSECGKAFSRKSRLSVHQRVH 402

HSP 2 Score: 110.153 bits (274), Expect = 1.040e-25
Identity = 59/136 (43.38%), Postives = 76/136 (55.88%), Query Frame = -3 
Query: 1155 CEECGKIFGNHYRLAVHVDTVHKGLKPFQCDECGKCFGRKYGLKQHQRSHSGNKPHVCTECGKSFLHRSRLIAHIDITHRGLQPFKCQECGKNYSQKNDLKLHIQRVHKGINPIQCKECGTQFSRKGELDKHLKSH 1562
            C  C K F     L  H   +H G KP++C+ C K F  K  L +HQR H+G KP  C ECGK+F H+S LI H    H   +P++C ECGK ++QK +L  H QR+H G  P +C EC   F +K  L  H K H
Sbjct:  186 CTYCDKAFSFKSLLISH-KRIHTGEKPYECNVCKKTFSHKANLIKHQRIHTGEKPFECPECGKAFTHQSNLIVH-QRAHMEKKPYECSECGKTFAQKFELTTH-QRIHTGERPYECNECAKTFFKKSNLIIHQKIH 318

HSP 3 Score: 94.3597 bits (233), Expect = 1.447e-20
Identity = 48/112 (42.86%), Postives = 68/112 (60.71%), Query Frame = -3 
Query: 1155 LKPFQCDECGKCFGRKYGLKQHQRSHSGNKPHVCTECGKSFLHRSRLIAHIDITHRGLQPFKCQECGKNYSQKNDLKLHIQRVHKGINPIQCKECGTQFSRKGELDKHLKSH 1490
            ++PF C  C K F  K  L  H+R H+G KP+ C  C K+F H++ LI H  I H G +PF+C ECGK ++ +++L +H QR H    P +C ECG  F++K EL  H + H
Sbjct:  181 VQPFICTYCDKAFSFKSLLISHKRIHTGEKPYECNVCKKTFSHKANLIKHQRI-HTGEKPFECPECGKAFTHQSNLIVH-QRAHMEKKPYECSECGKTFAQKFELTTHQRIH 290

HSP 4 Score: 85.1149 bits (209), Expect = 1.770e-17
Identity = 57/194 (29.38%), Postives = 99/194 (51.03%), Query Frame = -3 
Query: 1149 SKTPIKISFELTKEGKRVGTCEIDMDNLPRLVELEDEEQKNKFVFKPIGRIPKNKKCEECGKIFGNHYRLAVHVDTVHKGLKPFQCDECGKCFGRKYGLKQHQRSHSGNKPHVCTECGKSFLHRSRLIAHIDITHRGLQPFKCQECGKNYSQKNDLKLHIQRVHKGINPIQCKECGTQFSRKGELDKHLKSHEE 1730
            ++TPI+   +L  +   + T  + +  +P   +L ++  K         R    K+ +EC + FG    L +  +  H G++  + ++ GK    K  + +HQ+  +  +P +CT C K+F  +S LI+H  I H G +P++C  C K +S K +L  H QR+H G  P +C ECG  F+ +  L  H ++H E
Sbjct:   75 NQTPIEERGDLFGKALNLNTDFVSLRQVPYKYDLYEKTLKYNSDLLNSNRSYAGKQTDECNE-FGKAL-LYLKQEKTHSGVEYSEYNKSGKALSHKAAIFKHQKIKNLVQPFICTYCDKAFSFKSLLISHKRI-HTGEKPYECNVCKKTFSHKANLIKH-QRIHTGEKPFECPECGKAFTHQSNLIVHQRAHME 264

HSP 5 Score: 80.4925 bits (197), Expect = 6.300e-16
Identity = 42/100 (42.00%), Postives = 61/100 (61.00%), Query Frame = -3 
Query: 1311 NKFVFKPIGRIPKNKKCEECGKIFGNHYRLAVHVDTVHKGLKPFQCDECGKCFGRKYGLKQHQRSHSGNKPHVCTECGKSFLHRSRLIAHIDITHRGLQP 1610
            N  + + I    K  +C ECGK F  + +L +H+ T H G KP++C ECGK F ++  L+ H R H+G KP+ C+ECGK+F  +SRL  H  + H G +P
Sbjct:  310 NLIIHQKIHTGEKRYECSECGKSFIQNSQLIIHMRT-HTGEKPYECTECGKTFSQRSTLRLHLRIHTGEKPYECSECGKAFSRKSRLSVHQRV-HIGEKP 407
The following BLAST results are available for this feature:
BLAST of TCONS_00070650 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZFP11.203e-3343.51Zinc finger protein 1 homolog OS=Homo sapiens GN=Z... [more]
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