TCONS_00070842 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00070842
Unique Name	TCONS_00070842
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	4767

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_58:827295..836751+
coding sequence from alignment at scaffold_58:827295..836751+

transcript sequence

>TCONS_00070842 ID=TCONS_00070842|Name=TCONS_00070842|organism=Clytia hemisphaerica|type=transcript|length=4767bp
aaaagatttcaaggCAGCACTGATTACACACAATTAAAAAGATAGGCAaa
attttctacCCAGTCCCTGGTTGTCGTCCTGCTTTCTTCCAAGAGATTTC
CCAGCACCTCACAAATAAGGAACCCTGGTTTGTGTCACGTATTTGATTTC
TTGGATCTATGGCTACTAAACCAACGGATGAAATTGAACCAGAAGGGGAA
CCAAATGAAGACGTACAGATTTGGAAACAAATAGTAACAGAGCTATCACT
TCAAGCACCGGATCCTCAGATCAAATCTTGTCTTCAATTGTACAATCCAG
AGAAACCTACAAAATCTATTATCGCTAAACTgaccaaaagtttcaaaaaa
gacaCAATCAACAATTCACGACACACTTAACTTCCTGTCAAAACAGGAAG
TTGAATCTGCTAACAAGAATGAACTTGTCCAAAAGCTTTGCCTCAaagtc
aaaagcttttttccAGATGTATGCCAGATCTGCAACATGTCCTATGTTAT
CAAACTCAATGATGAACCCTCTCTCCAGTGTACGTGCACCATGTGGTCAA
GAAGTACACCGAGAGTGCTACctgaatattttgaaagataTGAACCTAGT
TGATCATAATGAGGCAATACGTGAtagacttttcaaaattcaatgtcaAT
CCTGCCAAGAAAACACTGTGTCTTTCACCCATGATAGTAACACACCAAAT
CCACCAAGATCAACTGAATCCCAGGAAAAATCTACTTGGAGTGTAGTAGA
TGAGGATTATGAGATCAATGCACCAATGACAGAAGACGATACTTCCAACA
CATTAAACCAAACAGCTCGCGGACCACCAAATGAAATCAACTTGAACAAC
AGCAACCAAGAGCAACAACAATCACGCCCAATATCCTGGATCAAGATCTC
AGACCAAATCAAAGACAAATGATCAAATATGTCACataaaagaaaaatgt
aaatatgAACTGAAAGGCCGAGACTGTCAATTTATCCATCCTAAAGCCTg
aacaaaattgctcaaatatgGCAACAAACAACCAAGAGGCTGCAACCTAG
GTACCAAGTGCCAAAGCTTCCACCTGAGGATGTGCTCATCATCTATTACA
AGAGGGGAATGCTTTAATCTTGACTGCAAACTCACGCATGTTTTAAAGGG
AACCAAACGACAtcagaaaaagcaaaacaatcgtAATGATGAACCTCAAG
ATTTTCTCACAATCCTGGACAACTTTCGCACAGGAATAATCTCTCTTGTG
AACAATTGTTTCAGCAACCAAAACCAACAAATACAATTCAGGAACCACAA
TTTGTCACATCAACCTCAACAAACATTCAATCATCAGCATCCCCTACATC
ATCTACCACCCAAGCACCCAACAATGGAACCAACATTTCCAAGAAATCTA
CTGGGACAGTGACTGCCCTTACTGATGCTGACCCGACTACCAAAACTACT
TCTAAACCTACACTGAATATGTTTTCATTTGTCAATATACAAGGACCTTG
CCCACAAACAAAACCTTCATCTGTACCCTACCTCAAAGATCTTACAAACA
GCTCAAACCAactgtttttaggcttttaacCGAAACCTGGTTAACGGACA
ATCTCAAAAAAGGAGAACTTGAGAttgaaaattacaattttttaaagaaa
aacagagACAGAGTAAAATCGAAATATGGCAGAGCAAGCAGAGGCGTTGC
ATTTTATGTGCATAATGACATTGCACTATTCTTCGAGCCCATTTTGGAAT
TCTCGAACGGAGTAAATGAAGCATtgatgcttttatcaaaaaaatttaat
attcttCTGTGTTATCTACAGACAACCCCACAATCCACAAACCTGAAGCA
CCTGAATTACAAGAACTCCTTTCTGCAATGATAGCAAAAATTGATAGTAt
taccatgaaggtaataaagatacagatggagagaaaacgtctcggtaatg
acctaaatggtcgttgaaatcttttataaatctattcaaagcggcctttc
tttgatgtaccatcattggaagcaaaaaacatcaatttataactttaaaa
GAACAGAAATAGGCCGGTacaatgattttgaaaaatttaattttgcgaga
aatcttagttaaaatgcgattcgaaatagtttcaactgatttaaggataa
aagaatatattaattttataaggatatatttttgggctggcattttgtga
acattgagagtcgcatcacattatcattgaaagtttcttatcttgaaatc
ttcacgtctaagtggacagcggttttcatactctgacaaaatgatcgata
caaggttcttaattgtaacacgtaattctttttcaaatctatcaatggct
ttatgggcagcttcccctagaagtttagagtattgtgcttattatgtgaa
gtttttttcaatttttcatgacaaggctattatatTTCAATATACTTGTT
AAAAATGTAATGTCTTTTCATTCATCTTTAATATTCTCACGAGTATACcg
aaaattaatcatcttattcccaaagcaaccaaacagctgtttgcttccga
tgataaatcagaatagaaaaaaggcattgactctccatctatctttatta
ccttcatggtatTACTGATTGTACACCTGACATATACATCCTTGGGGATT
TTAACATACCACACGCGCCTCTTAATGACGAGACTTCAACCCCAACACGA
AATTGCAATAAACAGCTTCTGGACGtttttttgtgatgacgtcattattt
tcatatataatttaagtgtcactttgtcaatatttggAGTCGATGATTTG
TCcttgaaattttctaaatagcatgttttgtATACAACATTTCCTTATTG
CaaataatattttattaaaCGTTTTTATAAATTGCATGTAACAGTTACAG
TTACAGTACAGTTTTGACCTGTGTCAATAGCCTGTGACCTGTCGACTCGA
ATTAGCCGACTTTTTTTGCAGAGataaataaatcaaaacagaaTGGCTTT
AGAAATCAAGAAAGTTTTAATCAGTGATAAAGTGGATTCTAGTTGTCAAA
CAGTGCTTGAAGAAAACAGCATTGAAGTGGATTACAAACCTGGCCTGTCA
AAAGATGAACTCAAAGCTATCATCAAGgattACGACGGTCTTATAGTCAG
ATCAGCCACCAAAGTGACGCAAGATGTTTATGATTGTGCTGAAAGGTTGA
AGATTATTGGCAGAGCTGGTACTGGTGTGGATAATATTGACCAAATTTCT
GCGTCAGCAAAAGGAGTTCTTGTCATGAACACACCGGGTGGAAATACACT
GAGTGCAGCAGAACACACCTGCGCCATGATCTCTGCTCTTGCAAGACACA
TTGGTCAAGGTTATGCTTCAATGTTGGAAGGAAAATGGGAGAGATCTAAG
TTTATGGGATGTGAACTCGGTGGAAAAACACTGGCTATTATCGGGCTTGG
TCGGATCGGACGTGAAGTGGCTTCAAGAATGCAATCTTACGGAATGAAGA
CGGTGGGTTACGATCCTTTGGTTTCACCAGAAGAAGCTGCTACATTTGGT
GTGGAGtatttacaattaaaaaatatttggcCCATCGCTGACTTTGTCAC
AGTTCATGTACCTCTCATCAAGCCAACACGTGGGATGATCAACGCATCGG
TGTTCGAAGTTTGCAAACCCTCCATGAAAGTGATCAATGTTGCACGTGGT
GGAATCATTGATGAAAAGGATCTCCTCAACGCATTGAATGCTGGGAAATG
TGGGGGAGCAGCACTTGATGTCTTCGAAACTGAACCACCTAAAGAGGGCA
GTGTCAGCATGGAGTTAGTGAAACATCCTAAGACCCTATGCACACCACAT
TTGGGAGCGAGTACGACAGAAGCACAGTTGCGCGTTGCTAAGGAGATTGC
AGAACAATTTGTGGATGCGGTCAATGGGAAACCCATGGTCGGCTTGGTCA
ACGCACCAGCTTTATCGCAATTGGCCAACCCTTTGTACGCACCTTGGGTG
GAACTAGCTCAGAAACTCGGCTCCCTAGCCTCCAATCTCAGTGATTCAGC
AAATTTGACTTTGCATTTGGATGGTGATGAATTGAAACCAGCCACCAGGC
TATTGAACACTGCGCTTTGTTTTGGACTTGCTAAAGCTAAAGGATTGGAC
TGCAATATGATCAGTGCTGTCAGTCTTCTCAAAGAGAAAAACATAGTGGT
TGTCAACTCACCAACACCCAAAGATCTCGCTTACTCTGCTCTCTCTGTTT
CAACAAGCGAAAACTCATGGCTCGTCACCGGCTTTCTGAGCAGAGGAAGA
CCCTGCATTGGAACTCTCCAAAATACTGAGCTCGCTAACCCAGTCGTTTT
AGAGAGCGGTTTGGTCTATGCAGTTTCCGACTCATCAGAGAAAGAACTTC
TGCTGACTTCAGCAGAAATGGGCGTTTCTTCAGTGAGTCTATCACGGAAT
GGAAACCGGGTGGTTTTTGTCGCAAGTGTCGCAGAGAAACCGGCCAACGA
ACTATTCAAATTCATACAATTCTAGggagtatttttgaaattttaggtta
gataggaaatatttttcaaaagatatggCGCATATGTCTGAAGTATAGGG
AGCTTCTTcgtcatttcaaatttttgtggtttgtaaattttctttacata
tttgaatttttttattttattctgtcAACTAGGATTTTTCCCGATATTTA
TAAAACTGTAGCTCATAACCGAATCAAAAATTACGATATTAATATTCAAG
TATTCCTTTGTTCCTTA

Run BLAST on NCBI

protein sequence of TCONS_00070842-protein

>TCONS_00070842-protein ID=TCONS_00070842-protein|Name=TCONS_00070842-protein|organism=Clytia hemisphaerica|type=polypeptide|length=510bp
MALEIKKVLISDKVDSSCQTVLEENSIEVDYKPGLSKDELKAIIKDYDGL
IVRSATKVTQDVYDCAERLKIIGRAGTGVDNIDQISASAKGVLVMNTPGG
NTLSAAEHTCAMISALARHIGQGYASMLEGKWERSKFMGCELGGKTLAII
GLGRIGREVASRMQSYGMKTVGYDPLVSPEEAATFGVEYLQLKNIWPIAD
FVTVHVPLIKPTRGMINASVFEVCKPSMKVINVARGGIIDEKDLLNALNA
GKCGGAALDVFETEPPKEGSVSMELVKHPKTLCTPHLGASTTEAQLRVAK
EIAEQFVDAVNGKPMVGLVNAPALSQLANPLYAPWVELAQKLGSLASNLS
DSANLTLHLDGDELKPATRLLNTALCFGLAKAKGLDCNMISAVSLLKEKN
IVVVNSPTPKDLAYSALSVSTSENSWLVTGFLSRGRPCIGTLQNTELANP
VVLESGLVYAVSDSSEKELLLTSAEMGVSSVSLSRNGNRVVFVASVAEKP
ANELFKFIQF

Run BLAST on NCBI

transcript from alignment at scaffold_58:827295..836751+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00070842 ID=TCONS_00070842|Name=TCONS_00070842|organism=Clytia hemisphaerica|type=transcript|length=9457bp|location=Sequence derived from alignment at scaffold_58:827295..836751+ (Clytia hemisphaerica)
aaaagatttcaaggCAGCACTGATTACACACAATTAAAAAGATAGGCAaa
gtatttttacaaaattatcTCTAACTCAATCTGTCAAAGTGCTTTACAGT
ATTATACATTACATTGAATGGTAAAACGATTAGAATTTCATAATTCTCTG
GTGAAAGTTCATTTGTTGCATGGGATGAGGTGGGACGATATCTGGGAAAG
TAGCTAGTGACCACTGGCCTGTAGATTCATTTTAGACtatgtattgattt
gattccaGGCATCATTCACTGAGGAAATGGAGTCACTTTAGCTTCTTTTC
TATCAGTTCTTTTCTCTTGTTAGAGCTACATCTGGTTtggaatatttgaa
aattattgaaattcaaatttttgcttaaaacaaaaaagaaaatagacaTT
ATGGTCTGAAGGTGATATTATAGATacttttttgatactttttaaagGCT
TCTTTGTTCATCTcaacaatcatccaatttgagaAATCCGATGATGGACC
ATGACTTTGATGCTATTTGAAAGAGCTCTCATAAGAGGAAGGTAATTTGG
CAGCAGTGGCTCGTCCGGTagtgaattgagaaaatggtccaattgatgtt
taaaattacTTTTGGAGCAGTTTTTGAGGTTACAGATGGATTGTGGGAGG
GCATTAAATAATCTGGGACCTTCTTCTGACAGGCAACAGGGAGTCTCCCC
ATATGTTTTTTTTCCTTATGTTCaccttttttagattttctacCCAGTCC
CTGGTTGTCGTCCTGCTTTCTTCCAAGAGATTTCCCAGCACCTCACAAAT
AAGGAACCCTGGTTTGTGTCACGTATTTGATTTCTTGGATCTATGGCTAC
TAAACCAACGGATGAAATTGAACCAGAAGGGGAACCAAATGAAGACGTAC
AGATTTGGAAACAAATAGTAACAGAGCTATCACTTCAAGCACCGGATCCT
CAGATCAAATCTTGTCTTCAATTGTACAATCCAGAGAAACCTACAAAATC
TATTATCGCTAAACTgaccaaaagtttcaaaaaagacaCAATCAACAATT
CACGACACACTTAACTTCCTGTCAAAACAGGAAGTTGAATCTGCTAACAA
GAATGAACTTGTCCAAAAGCTTTGCCTCAaagtcaaaagcttttttccAG
ATGTATGCCAGATCTGCAACATGTCCTATGTTATCAAACTCAATGATGAA
CCCTCTCTCCAGTGTACGTGCACCATGTGGTCAAGAAGTACACCGAGAGT
GCTACctgaatattttgaaagataTGAACCTAGTTGATCATAATGAGGCA
ATACGTGAtagacttttcaaaattcaatgtcaATCCTGCCAAGAAAACAC
TGTGTCTTTCACCCATGATAGTAACACACCAAATCCACCAAGATCAACTG
AATCCCAGGAAAAATCTACTTGGAGTGTAGTAGATGAGGATTATGAGATC
AATGCACCAATGACAGAAGACGATACTTCCAACACATTAAACCAAACAGC
TCGCGGACCACCAAATGAAATCAACTTGAACAACAGCAACCAAGAGCAAC
AACAATCACGCCCAATATCCTGGATCAAGATCTCAGACCAAATCAAAGAC
AAATGATCAAATATGTCACataaaagaaaaatgtaaatatgAACTGAAAG
GCCGAGACTGTCAATTTATCCATCCTAAAGCCTgaacaaaattgctcaaa
tatgGCAACAAACAACCAAGAGGCTGCAACCTAGGTACCAAGTGCCAAAG
CTTCCACCTGAGGATGTGCTCATCATCTATTACAAGAGGGGAATGCTTTA
ATCTTGACTGCAAACTCACGCATGTTTTAAAGGGAACCAAACGACAtcag
aaaaagcaaaacaatcgtAATGATGAACCTCAAGATTTTCTCACAATCCT
GGACAACTTTCGCACAGGAATAATCTCTCTTGTGAACAATTGTTTCAGCA
ACCAAAACCAACAAATACAATTCAGGAACCACAATTTGTCACATCAACCT
CAACAAACATTCAATCATCAGCATCCCCTACATCATCTACCACCCAAGCA
CCCAACAATGGAACCAACATTTCCAAGAAATCTACTGGGACAGTGACTGC
CCTTACTGATGCTGACCCGACTACCAAAACTACTTCTAAACCTACACTGA
ATATGTTTTCATTTGTCAATATACAAGGACCTTGCCCACAAACAAAACCT
TCATCTGTACCCTACCTCAAAGATCTTACAAACAGCTCAAACCAactgtt
tttaggcttttaacCGAAACCTGGTTAACGGACAATCTCAAAAAAGGAGA
ACTTGAGAttgaaaattacaattttttaaagaaaaacagagACAGAGTAA
AATCGAAATATGGCAGAGCAAGCAGAGGCGTTGCATTTTATGTGCATAAT
GACATTGCACTATTCTTCGAGCCCATTTTGGAATTCTCGAACGGAGTAAA
TGAAGCATtgatgcttttatcaaaaaaatttaatattcttCTGTGTTATC
TACAGACAACCCCACAATCCACAAACCTGAAGCACCTGAATTACAAGAAC
TCCTTTCTGCAATGATAGCAAAAATTGATAGTAttaccatgaaggtaata
aagatacagatggagagaaaacgtctcggtaatgacctaaatggtcgttg
aaatcttttataaatctattcaaagcggcctttctttgatgtaccatcat
tggaagcaaaaaacatcaatttataactttaaaaGAACAGAAATAGGCCG
GTacaatgattttgaaaaatttaattttgcgagaaatcttagttaaaatg
cgattcgaaatagtttcaactgatttaaggataaaagaatatattaattt
tataaggatatatttttgggctggcattttgtgaacattgagagtcgcat
cacattatcattgaaagtttcttatcttgaaatcttcacgtctaagtgga
cagcggttttcatactctgacaaaatgatcgatacaaggttcttaattgt
aacacgtaattctttttcaaatctatcaatggctttatgggcagcttccc
ctagaagtttagagtattgtgcttattatgtgaagtttttttcaattttt
catgacaaggctattatatTTCAATATACTTGTTAAAAATGTAATGTCTT
TTCATTCATCTTTAATATTCTCACGAGTATACcgaaaattaatcatctta
ttcccaaagcaaccaaacagctgtttgcttccgatgataaatcagaatag
aaaaaaggcattgactctccatctatctttattaccttcatggtatTACT
GATTGTACACCTGACATATACATCCTTGGGGATTTTAACATACCACACGC
GCCTCTTAATGACGAGACTTCAACCCCAACACGAAATTGCAATAAACAGC
TTCTGGACGtttttttgtgatgacgtcattattttcatatataatttaag
tgtcactttgtcaatatttggAGTCGATGATTTGTCcttgaaattttcta
aatagcatgttttgtATACAACATTTCCTTATTGCaaataatattttatt
aaaCGTTTTTATAAATTGCATGTAACAGTTACAGTTACAGTACAGTTTTG
ACCTGTGTCAATAGCCTGTGACCTGTCGACTCGAATTAGCCGACTTTTTT
TGCAGAGGTAAATGTCTTTTCAAATTCTTGAAAGGGTCAAATGCTtagaa
aaattcttgaaatactttaggtgtacaaactttcgcaatCAGAAACTTTT
GCTAggttcaaaaatatttactttcatgaatttgaggaaaaaatattttt
cgcaagCACAAACTTTTTcgaatcgttggataaaaatgagaaattttcaa
caaaattgttCCTTGAATccgataaaaaattttctttgagttTGAAAAGG
TGTTGAATACTAAGTTTATCCAATTCAAGAAGTATGTTTGTCCCTCTGTC
TAAGGCGGTTTGTGCGcaaatcttttttattatatattgatttgcaaaag
tttatgttctcaataaagatttttttgtcaaatttgcaAAAAGTAAGTGT
TGTAAATTTCGCATTTTTTGTATTGCAAAGTGCAAATTTGCACGCCTACA
GTCTAATATTtacatattttcttttctttgtgcTACTGATGTCAGGCCAG
TTCTCATCTCTCTGTGCATATTCATTTATCAGCCATTCTACCTTAAAATT
TATCTGTAGatatttttgcaatattttcaaaaaatgattcaatttttgcA
GGACTTATTTTTGCAGGCACAGGAACTTGTAAGTTTCCCAGGGGTAAAAT
TTAAGGAATCAGCCGCTTTTATTGGCCATTCTATTATAGAATTTACGAGG
CAGACATCAAAGTTTCTAGTGTCTGGAAAATATATCTAGCATAACAGTGT
GGGgttacatttttattaaggtGTCCAAGAATGCTTTAACTTTATATTTC
CTAAAtcttattattttcaatttcttctaaAAATTTGTGTCTTTGTGTCT
TATCTTTagataaataaatcaaaacagaaTGGCTTTAGAAATCAAGAAAG
TTTTAATCAGTGATAAAGTGGATTCTAGTTGTCAAACAGTGCTTGAAGAA
AACAGCATTGAAGTGGATTACAAACCTGGCCTGTCAAAAGATGAACTCAA
AGCTATCATCAAGGTGCCACATTCATTTCCTGGACAATCCAATGATTGAT
GAAAATCTTTATGATGGCCTTCTTGAATACCAATACTTGGATTTCTGCAA
CTATCCACAAAAAGATAGATGATAGATAAAGATGTgagatttttctaatt
ttggaaAACAATTCAGAGGATAATATTAtggttttaatattttattttta
ggattACGACGGTCTTATAGTCAGATCAGCCACCAAAGTGACGCAAGATG
TTTATGATTGTGCTGAAAGGTTGAAGATTATTGGCAGAGCTGGTACTGGT
GTGGATAATATTGACCAAATTTCTGCGTCAGCAAAAGGAGTTCTTGTCAT
GAAGTAAGAAGCTGTAAAGATTTCTTAATCAATTACTTGCATGGTCTTTT
AGAAAAGggattttatttaaattttagatttattagtttggagtgaagaa
aaaaagcaaaattgattttaaataaCAAACGGTTTTCTTTTTTCAGCACA
CCGGGTGGAAATACACTGAGTGCAGCAGAACACACCTGCGCCATGATCTC
TGCTCTTGCAAGGTATACCTTATTTGTCAAATATTTTAGCTCATTTTGTT
TAACTgaccaaaaaacgaaaaaaacgaAAGCAGCATGGAGCACAGAGAAA
GTCTAAGTCTGATCCATACATACCATACCTACCTGCCTACACATTACGAA
GTTGACTGACCAGGTATGAACGATAGAAAAATAAGATCATTTCCTTTTTA
CATTATCTTTTTTACATTAATTACCTTGAGTTTAAATCATTGAGAGGGAT
TAACTAAAGTCTTTACATCTGTTGAGAAGGCTgtttttcgaattcaaatc
ctACTGAGAAAGTCACGACCTGATCGCAACACTGTTCTAGAGAGAAACTC
AATAATCGTGCTTATCGCTATCTCTTATCTTCTTTCAGACACATTGGTCA
AGGTTATGCTTCAATGTTGGAAGGAAAATGGGAGAGATCTAAGGTAATCT
ATACAGAAGCGTGAAAATTAGTATATGTTATCACATGATAATGAGTGAAA
TTCGGGAATAATTGTACGAGTGATTGCACGagggatttttttgtttttaa
ttttctgagtccttttcttatattgttgttcatagtttttctttctcaca
aaaaaaACGTTCGCGGcatcgaagagtgtgattaacggttaattgctctc
tttgaaggcacgccaaatgagaaaaaatacaGTCGGTAGTCCATCGTGCG
ATTATACATGATAAACATCGACAACGACACTTTAGGATTTACGCTCGCGT
TTACTTTGGCTGAATGACGTCAAATTTCGCGAAGGTAACCCGGAACCCCT
TTCAAGGAGCTTTAAGGACAAGGGCTTTATTGTACACCATCCTATTTTTG
TAGAATTCATATACCAGCTCTTTTAATCGTTATTTTGATAGTTTATGGGA
TGTGAACTCGGTGGAAAAACACTGGCTATTATCGGGCTTGGTCGGATCGG
ACGTGAAGTGGCTTCAAGAATGCAATCTTACGGAATGAAGGTCAAAATTA
TGAATTAAACTCTCGCTAATTCCAACTCGAACAGgattataaagtttttt
actGGCTTTTCCCCATGACAGAAGTtgagaatgatagaatgatttgaata
aaagaagttcgaattagcgagggTCAACTGTATCGTGCATTCTGTATCAA
ATTTCCCATAATGCTTAACCTTAATAATGTTTTAGTGAAATAGTTACCTT
TTTAACTAAATGAACTGTCCCTTTCCTGTCCTTTGAACGGACATTCTTTT
TCTTACAAATCTAAAGCAGCATCTCTTATCTTTTCTCCAAACCTAAAACC
ATCGAATTTATTTCAACCTTTCTCGATTTGGTCGTTCACAGACGGTGGGT
TACGATCCTTTGGTTTCACCAGAAGAAGCTGCTACATTTGGTGTGGAGta
tttacaattaaaaaatatttggcCCATCGCTGACTTTGTCACAGTTCATG
TACCTCTCATCAAGCCAACACGTGGTATGTTCAACTTCCTTCCAATGAAA
GGTTTCCTTCTTGTTGCCTGCATCTGTGTGAGTGATATCGTtggagattt
tcaaaaaatctgaatttttagATCTTGCTTTTAGTTAAACAAAATGCTAG
GGGACTACAAAATGGTAGTGACGTTTATCTCTGAATGTACAGTTGATTct
caataactcgaacctcttaatctcgaatgtctccttaactcgaacaagtt
ttatagtcccttcagttaacaatgtcaTTTAAACTTTATTCGAAAAGATT
TGCGTTCCCTGTTTGTGTTTCAGCTATGGAGACtccaatttcaatttcat
ctttttctttCCATTTGAAGGGATGATCAACGCATCGGTGTTCGAAGTTT
GCAAACCCTCCATGAAAGTGATCAATGTTGCACGTGGTGGAATCATTGAT
GAAAAGGATCTCCTCAACGCATTGAATGCTGGGAAATGTGGGGGAGCAGC
ACTTGATGTCTTCGAAACNTCAACGCATTGAATGCTGGCAAATGTGGGGG
AGCAGCACTTGATGTCTTCGAAACTGAACCACCTAAAGGTTGATTTAAAT
TCCTGATCATTGTTATGTGCGGTGAAGATCTTCTACAAAGAAATCTACAC
AATTTAGAAAGTGCTCATTTAAGTCACTCCTCAAATTCGGCTATATATCA
ATAGAGTttcaatatgaaattttttacCATCTTGTTTTCCATTTGGAAGA
TTAACCTAGGATCAAAGAAGGAATCTTCTGGCtgagtttcatttttcatt
tgtttgtcCCCTAATGACATTCGtcgaaatttagtttttttaactttttc
tcttCGCAGAGGGCAGTGTCAGCATGGAGTTAGTGAAACATCCTAAGACC
CTATGCACACCACATTTGGGAGCGAGTACGACAGAAGCACAGTTGCGCGT
TGCTAAGGAGATTGCAGAACAATTTGTGGATGCGGTCAATGGGAAACCCA
TGGTCGGCTTGGTGAGTGCTTCTTACTCGACTCTTTTCAGGAACGATTTC
TTTGGTAGGTCCCGAGTAATCTAGGACTTGTTTTAATGGGCTCCGCGTCC
TACTCGGCCATATAAAAGTGAAGATggttagtctgaatcgcagacctcta
tagatatacttcctataagaaacttttatcgctagaggatgagcagaagc
ttAGAAGATGGTCATCCCTAGTACTATAGCCTATATAGAAGACTGCTTCT
GAAGGCCTTAgaatattgattgatttaaaGAACGagcatttgtttcattt
gaacCTCGTTGACTTTATTGCCATCATGATTCCCACGAATACTGTTCATT
TTAATCGAATAGCAAAGAACCAATGACATCGATCTCTCGAAAGAATTTGA
AACTCGCGTTTCTACAGGTTTAACCCCCTTGTTTATCATTGACAAAAACC
GCAATTCTACAATTTCAAAATACCCATTACACCAATCCGTTTATTTCAAG
GTCAACGCACCAGCTTTATCGCAATTGGCCAACCCTTTGTACGCACCTTG
GGTGGAACTAGCTCAGAAACTCGGCTCCCTAGCCTCCAATCTCAGTGATT
CAGCAAATTTGACTTTGCATTTGGATGGTGATGAATTGAAACCAGCCACC
AGGCTATTGAACACTGCGCTTTGTTTTGGACTTGCTAAAGCTAAAGGATT
GGACTGCAATATGATCAGTGCTGTCAGTCTTCTCAAAGAGAAAAACATAG
TGGTAAGTCTATACTACATTCACTATGTCTGCGATTTGTCACTTGACAAG
AATTATCTACCGCGgtacggcaaaaaaaaaacgtcACCAATTTTAATTGT
AGCGCTGCCAGATTATCGAAATGACCGGGAAAAACTATTAAAGCATATTC
AAAAGTTTCCTGGAAGTTTTGACTTAAAAGAGCTATTTTTCTAAAAGATA
TGcctttatatatattttaggAATCGAGTACGGAATGTTTTATCTCAGAC
AAAATTATGCCAAAATATCCCTCGTAGAATGTCTAAATAATACCCGATTA
CTAAAAGATTTTAGACAACACTACGATAAAGTTTGTCAATAAAAATCTAG
CTTTTGCTTTATTGATcaatgtaaaatttgaaaatgctcTTGGCCTGAAC
CATAAAGCTCACCTCAAAAACAGGGGTCGTGATCATACCCTTCGTAAATG
TGACCTTGATGATCATTTCAACATCTTCTTCACTTTAGGTTGTCAACTCA
CCAACACCCAAAGATCTCGCTTACTCTGCTCTCTCTGTTTCAACAAGCGA
AAACTCATGGCTCGTCACCGGCTTTCTGAGCAGAGGAAGACCCTGCATTG
GAACTCTCCAAAATACTGAGCTCGCTAACCCAGTCGTTTTAGAGAGCGGT
TTGGTCTATGCAGTTTCCGACTCATCAGAGAAAGAACTTCTGCTGACTTC
AGCAGAAATGGGCGTTTCTTCAGTGAGTCTATCACGGAATGGAAACCGGG
TGGTTTTTGTCGCAAGTGTCGCAGAGAAACCGGCCAACGAACTATTCAAA
TTCATACAATTCTAGggagtatttttgaaattttaggttagataggaaat
atttttcaaaagatatggCGCATATGTCTGAAGTATAGGGAGCTTCTTcg
tcatttcaaatttttgtggtttgtaaattttctttacatatttgaatttt
tttattttattctgtcAACTAGGATTTTTCCCGATATTTATAAAACTGTA
GCTCATAACCGAATCAAAAATTACGATATTAATATTCAAGTATTCCTTTG
TTCCTTA

Coding sequence (CDS) from alignment at scaffold_58:827295..836751+

>TCONS_00070842 ID=TCONS_00070842|Name=TCONS_00070842|organism=Clytia hemisphaerica|type=CDS|length=1533bp|location=Sequence derived from alignment at scaffold_58:827295..836751+ (Clytia hemisphaerica)
aTGGCTTTAGAAATCAAGAAAGTTTTAATCAGTGATAAAGTGGATTCTAG
TTGTCAAACAGTGCTTGAAGAAAACAGCATTGAAGTGGATTACAAACCTG
GCCTGTCAAAAGATGAACTCAAAGCTATCATCAAGgattACGACGGTCTT
ATAGTCAGATCAGCCACCAAAGTGACGCAAGATGTTTATGATTGTGCTGA
AAGGTTGAAGATTATTGGCAGAGCTGGTACTGGTGTGGATAATATTGACC
AAATTTCTGCGTCAGCAAAAGGAGTTCTTGTCATGAACACACCGGGTGGA
AATACACTGAGTGCAGCAGAACACACCTGCGCCATGATCTCTGCTCTTGC
AAGACACATTGGTCAAGGTTATGCTTCAATGTTGGAAGGAAAATGGGAGA
GATCTAAGTTTATGGGATGTGAACTCGGTGGAAAAACACTGGCTATTATC
GGGCTTGGTCGGATCGGACGTGAAGTGGCTTCAAGAATGCAATCTTACGG
AATGAAGACGGTGGGTTACGATCCTTTGGTTTCACCAGAAGAAGCTGCTA
CATTTGGTGTGGAGtatttacaattaaaaaatatttggcCCATCGCTGAC
TTTGTCACAGTTCATGTACCTCTCATCAAGCCAACACGTGGGATGATCAA
CGCATCGGTGTTCGAAGTTTGCAAACCCTCCATGAAAGTGATCAATGTTG
CACGTGGTGGAATCATTGATGAAAAGGATCTCCTCAACGCATTGAATGCT
GGGAAATGTGGGGGAGCAGCACTTGATGTCTTCGAAACTGAACCACCTAA
AGAGGGCAGTGTCAGCATGGAGTTAGTGAAACATCCTAAGACCCTATGCA
CACCACATTTGGGAGCGAGTACGACAGAAGCACAGTTGCGCGTTGCTAAG
GAGATTGCAGAACAATTTGTGGATGCGGTCAATGGGAAACCCATGGTCGG
CTTGGTCAACGCACCAGCTTTATCGCAATTGGCCAACCCTTTGTACGCAC
CTTGGGTGGAACTAGCTCAGAAACTCGGCTCCCTAGCCTCCAATCTCAGT
GATTCAGCAAATTTGACTTTGCATTTGGATGGTGATGAATTGAAACCAGC
CACCAGGCTATTGAACACTGCGCTTTGTTTTGGACTTGCTAAAGCTAAAG
GATTGGACTGCAATATGATCAGTGCTGTCAGTCTTCTCAAAGAGAAAAAC
ATAGTGGTTGTCAACTCACCAACACCCAAAGATCTCGCTTACTCTGCTCT
CTCTGTTTCAACAAGCGAAAACTCATGGCTCGTCACCGGCTTTCTGAGCA
GAGGAAGACCCTGCATTGGAACTCTCCAAAATACTGAGCTCGCTAACCCA
GTCGTTTTAGAGAGCGGTTTGGTCTATGCAGTTTCCGACTCATCAGAGAA
AGAACTTCTGCTGACTTCAGCAGAAATGGGCGTTTCTTCAGTGAGTCTAT
CACGGAATGGAAACCGGGTGGTTTTTGTCGCAAGTGTCGCAGAGAAACCG
GCCAACGAACTATTCAAATTCATACAATTCTAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_044065	XLOC_044065	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00070842-protein	TCONS_00070842-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_58	supercontig	scaffold_58:827295..836751 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
58.039	61.8721	69.5316	66.0245	198.871	153.796	159.704	196.859	45.6378	132.659	21.087	10.6675	4.45647	2.77975	4.12466	6.94543	14.373	11.2353	0.783937	1.1797	7.44808	9.90334	10.9174	11.2896	8.51897	9.90786	101.331	52.7261	22.9156	8.99786

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR006139	D-isomer_2_OHA_DH_cat_dom
IPR006140	D-isomer_DH_NAD-bd
IPR029009	ASB_dom
IPR029753	D-isomer_DH_CS
IPR029752	D-isomer_DH_CS1
IPR016040	NAD(P)-bd_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process
GO:0008152	metabolic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0051287	NAD binding
GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0055114	oxidation-reduction process
molecular_function	GO:0051287	NAD binding
molecular_function	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Blast

[Close]

BLAST of TCONS_00070842 vs. Swiss-Prot (Human)
Match: SERA (D-3-phosphoglycerate dehydrogenase OS=Homo sapiens GN=PHGDH PE=1 SV=4)

HSP 1 Score: 422.935 bits (1086), Expect = 1.404e-131
Identity = 219/409 (53.55%), Postives = 289/409 (70.66%), Query Frame = 2

Query: 3005 IKKVLISDKVDSSCQTVLEENSIEVDYKPGLSKDELKAIIKDYDGLIVRSATKVTQDVYDCAERLKIIGRAGTGVDNIDQISASAKGVLVMNTPGGNTLSAAEHTCAMISALARHIGQGYASMLEGKWERSKFMGCELGGKTLAIIGLGRIGREVASRMQSYGMKTVGYDPLVSPEEAATFGVEYLQLKNIWPIADFVTVHVPLIKPTRGMINASVFEVCKPSMKVINVARGGIIDEKDLLNALNAGKCGGAALDVFETEPPKEGSVSMELVKHPKTLCTPHLGASTTEAQLRVAKEIAEQFVDAVNGKPMVGLVNAPALSQLANPLYAPWVELAQKXXXXXXXXXXXXXXTLHL--DGDELKPATRLLNTALCFGLAK--AKGLDCNMISAVSLLKEKNIVVVNSPTP 4219
            ++KVLISD +D  C+ +L++  ++V  K  LSK+EL A ++D +GLIVRSATKVT DV + AE+L+++GRAGTGVDN+D  +A+ KG+LVMNTP GN+LSAAE TC MI  LAR I Q  ASM +GKWER KFMG EL GKTL I+GLGRIGREVA+RMQS+GMKT+GYDP++SPE +A+FGV+ L L+ IWP+ DF+TVH PL+  T G++N + F  CK  ++V+N ARGGI+DE  LL AL +G+C GAALDVF  EPP++ +    LV H   +  PHLGAST EAQ R  +EIA QFVD V GK + G+VNA AL+   +P   PW+ LA+ LG+L    + S   T+ +   G  LK A   L+ A+  GL K  +K  D N+++A  L+KE  + V  S +P
Sbjct:    6 LRKVLISDSLDPCCRKILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDRA----LVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVKGKSLTGVVNAQALTSAFSPHTKPWIGLAEALGTLMRAWAGSPKGTIQVITQGTSLKNAGNCLSPAVIVGLLKEASKQADVNLVNAKLLVKEAGLNVTTSHSP 410

The following BLAST results are available for this feature:

BLAST of TCONS_00070842 vs. Swiss-Prot (Human)

BLAST of TCONS_00070842 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SERA	1.404e-131	53.55	D-3-phosphoglycerate dehydrogenase OS=Homo sapiens...	[more]

You are here

TCONS_00070842 (transcript) - C. hemisphaerica