|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070873 ID=TCONS_00070873|Name=TCONS_00070873|organism=Clytia hemisphaerica|type=transcript|length=7544bpRun BLAST on NCBI protein sequence of TCONS_00070873-protein >TCONS_00070873-protein ID=TCONS_00070873-protein|Name=TCONS_00070873-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1481bp MESEFRVKETRKLLEDLKKNFQCTICLELFSQPVSTKCNHIFCQYCLTEMRun BLAST on NCBI transcript from alignment at scaffold_58:1178606..1198766+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070873 ID=TCONS_00070873|Name=TCONS_00070873|organism=Clytia hemisphaerica|type=transcript|length=20161bp|location=Sequence derived from alignment at scaffold_58:1178606..1198766+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_58:1178606..1198766+ >TCONS_00070873 ID=TCONS_00070873|Name=TCONS_00070873|organism=Clytia hemisphaerica|type=CDS|length=4446bp|location=Sequence derived from alignment at scaffold_58:1178606..1198766+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00070873 vs. Swiss-Prot (Human)
Match: SMYD4 (SET and MYND domain-containing protein 4 OS=Homo sapiens GN=SMYD4 PE=2 SV=3) HSP 1 Score: 229.18 bits (583), Expect = 2.846e-61 Identity = 200/742 (26.95%), Postives = 320/742 (43.13%), Query Frame = 3
Query: 5232 KTKGNKAYIGKDNNKALELYNQAMIHA-CQGEEFALVLGNRSAVLFSQKRFEECITDIDIALLNNFPTDKLWKLYKRKAEALIKLKRC---------LQGKIFVDKALEE---------LHRLGNKDDEVTKLTEILISLDVEKDESSNSTTSGKLVRPVGEFNPTMKYASSHLKRCFDKTKGRYIISDQDILKGSIILSETPYAAVL----LKPMFKT--------------HCQHCFTKISLPFPCYKCIEVRYCSETCRKASWEEYHYFECGRINLLDKLGI-SRLAMRIILVTPMQTLR------------------------------LFEQQDSSKL--TVSSGCNNGGCYDSKEYTSVYHLVSNSQYMIAEDLF-----------QYSCAALLMLKV--LSRFSYIDDSV------DSTFIGGLMLRHILQLVCNAHAITSLSYTDSQSNVV-EQDQVRIATAIYPTTSLLNHSCEPSIVNSFQNERLIVKLTRDVKKGEEIFNCYGPHYRRMEFKERQKVLQEQYFFTCSCTHCEQGLTSVNELDCFICEEIFNCYGPHYRRMEFKERQKVLQEQYFFTCSCTHCEQGLTSVNELDCFICEKCQGILNNQGCCQSCWIADKDRLVYCENIEQTCHDNFLNALSLMTNKRDDQLNIKAAIKILKRCQKSRLAVLSPNHKKLGETNDALGKCYATLDNYESSVDYVTKSVAVTELHFGGESIEVTNELLKLSDVYM 7187
+ +GNK + KD A LY++ + H+ E+ +L NRSA LF ++E C+ DI+ A + +P K+ RKAE L+ L R L+ AL + LHRL K E LTE + + E + + E N + ASS + C D KGR +++ +DIL G +++ E + +VL L P +C C PC C +YCS+ C + +WE YH EC LL LG+ +A+R+ L+ + +R L E + + + T GC+ G Y++ Y +V++L+ +++ E F Q A+L + + S + +V D T G MLRH+LQL CNA A+T++ +T + ++V + QVR+AT I+P SLLNHSC P+ SF + ++ ++ ++KG+EI +CYGPH RM ERQ+ L+ QYFF C+C C+ RM R + C C + + L C ++ C +S +D LV + Q A L+ RD +L + A++ L CQ+ + L H +GE D L + A L +++ S ++ +S+ V E+ G S+E+ +EL KL+ ++
Sbjct: 72 REEGNKKFQEKDYTGAAVLYSKGVSHSRPNTEDMSLCHANRSAALFHLGQYETCLKDINRAQTHGYPERLQPKIMLRKAECLVALGRLQEASQTISDLERNFTATPALADVLPQTLQRNLHRLKMKMQEKDSLTESFPAALAKTLEDAA----------LREENEQLSNASSSIGLCVDPLKGRCLVATKDILPGELLVQEDAFVSVLNPGELPPPHHGLDSKWDTRVTNGDLYCHRCLKHTLATVPCDGCSYAKYCSQECLQQAWELYHRTECPLGGLLLTLGVFCHIALRLTLLVGFEDVRKIITKLCDKISNKDICLPESNNQVKTLNYGLGESEKNGNIVETPIPGCDINGKYENN-YNAVFNLLPHTENHSPEHKFLCALCVSALCRQLEAASLQAIPTERIVNSSQLKAAVTPELCPDVTIWGVAMLRHMLQLQCNAQAMTTIQHTGPKGSIVTDSRQVRLATGIFPVISLLNHSCSPNTSVSFISTVATIRASQRIRKGQEILHCYGPHKSRMGVAERQQKLRSQYFFDCACPACQT----------------------EAHRMAAGPRWEAF--------CCNSCGAPMQGDDVLRC----------GSRSCAESA--VSRDHLV---SRLQDLQQQVRVAQKLL---RDGEL--ERAVQRLSGCQRDAESFLWAEHAVVGEIADGLARACAALGDWQKSATHLQRSLYVVEVRHGPSSVEMGHELFKLAQIFF 752 The following BLAST results are available for this feature:
BLAST of TCONS_00070873 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.