TCONS_00070941 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070941
Unique NameTCONS_00070941
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1918

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070941 ID=TCONS_00070941|Name=TCONS_00070941|organism=Clytia hemisphaerica|type=transcript|length=1918bp
atttttcagttaaacaaaatcaaaatattgaaaataaacaaacacaGCAC
TATCCTGTAATGTTTGTATTAAAACCGTTTACTACAACAACTTGGTCCAA
ATATGTTTATTGTAAGCATCAAATCAGACGGTGTTTATCATTCACCGACC
TCTCCTTAGATGTCTCATTGGTTCGGAAATTGAGGTCTTTTGAAATCAGG
ACTCCAACAGCCATCCAAGAAAAGTGCTGTGAGCTAATGTTGAAGGGACA
AAATCTGGTGTTGAATTCAGAGACCGGAAGTGGCAAAACCCTTGCGTATG
CTGTACCAATAGTCCAAAGGATTCAAGAAAGGAGGAGATTAAAGCAACAA
AAACCACACCCTTCAGCTGTTGTTCTTCTACCCAGTGTCGAATTGTGTTA
TCAGGTTGGAGATGTCTTTCGGTCTATGTTAGGAGTGAACGTTTCTTTAG
TCACCAGTGATATTCCAATGCGTTTGAAGAATACAGATGTTGTTGTGACA
ACACCACACGCCCTCTCCACCTACCCTTATAATGTTTTGAACGAAACGGA
AACGATCATTATTGATGAAGCTGATATTTTAATCGATAAACGAATCGGGA
AACATGGTCGTAAGGATCCTTTGTTTCGTCTTATGAATCATATGTTGGAT
ATGGAGAATAAGACGTTTGACCACGATCGACAGTTCGTTTTTGTTGGTGC
GACCATGCCTGATTCTGAGGTCAAGAAATCACGTAAGGCCATGacatata
tacgacattgggtTCCGGATATACAGATGGTTCGAGGAGACGAAGCTCAC
ATGATGCTGTCCAGGCTAGATATGATTTATATGGATGTTGATAGAGGAAA
CAAGTTAAAATATTTCGTTAAAGCTGTCTCACAGCTTGGTACTGAGAATT
TCAAAATGCTCGTTTTCGTTGATACTGTAAAAACAGCTCAAAAGTTCTTT
CAGGATTTGACTCGGATCGATCAGCACCATGGAtccactattgaaaaaga
cacATTCCCAGAACAATTGTTACTTTTTCAGAAGAGATGGACTGATAGCT
TGTTACTTTTACATCGTGACGTTTCAAGAGATGACCGTCTGACTTCTTTG
GATTATTTTAATAAATCAAGACAATGTATACTTATTACGACGGATGTCTC
AGCTAGAGGACTTGATTTCCAAGATGTNATAAATCAATACAATGTATACT
TATTACGACGGATGTCTCAGCTCGAGGACTTGATTTCCAAGATGTGGATG
TTGTCCTACTGTTAGATTTTGCGAAGAATGTTACTGATCTGATACATCGA
GTTGGTAGAACTGCACGCATGGGAAAACAAGGCAAAGTTATCAATTTTGT
TACAACTGAAGACCAAAGACTTGCCTCACTTATTCAAGAATACTCTGCAT
CTGGTGAAAGTTTAGATCGTCTTTTCAGCCGACGCAGAGGACTTGGGAAA
GCACTTAAGAGGATAGATGAAGCCAGCACTGAAGCCGCTTTATGAGACTT
TTCTATATTATTTTTGTatcgtttttgaatttttgctaCTTCTATTTTCA
TATACATGGAGCGAGGATTGTGACGATCGCTTTTGTGACCGTAACAGCCT
TACTTTCATTTTCCAAGATCTGCAATGGTTCGAGCTAAGTCCTAGGTTTA
CTAACCTGGTAGGCTTTTGGTTAGTTTCAAATAATAAAACCTGGTCTACT
CATTCAGTAAGAAATCTAAGAAATGAGATGTTACAAACCGTATCCATTTT
AACGGGTGACATAATTAAGGAGGAAAACCATTCAGTTTAATTACCATACA
CCGCACAAGTTGTCAAGGCAACGGGTCAAGGTTTAGATTGATAGATGAGG
TTTATTAAATGACATTTATTTTTGTACATTACTTATTTAGAAAGAGGATT
TTTTATGTTTGTATAAAT
Run BLAST on NCBI

protein sequence of TCONS_00070941-protein

>TCONS_00070941-protein ID=TCONS_00070941-protein|Name=TCONS_00070941-protein|organism=Clytia hemisphaerica|type=polypeptide|length=420bp
FSVKQNQNIENKQTQHYPVMFVLKPFTTTTWSKYVYCKHQIRRCLSFTDL
SLDVSLVRKLRSFEIRTPTAIQEKCCELMLKGQNLVLNSETGSGKTLAYA
VPIVQRIQERRRLKQQKPHPSAVVLLPSVELCYQVGDVFRSMLGVNVSLV
TSDIPMRLKNTDVVVTTPHALSTYPYNVLNETETIIIDEADILIDKRIGK
HGRKDPLFRLMNHMLDMENKTFDHDRQFVFVGATMPDSEVKKSRKAMTYI
RHWVPDIQMVRGDEAHMMLSRLDMIYMDVDRGNKLKYFVKAVSQLGTENF
KMLVFVDTVKTAQKFFQDLTRIDQHHGSTIEKDTFPEQLLLFQKRWTDSL
LLLHRDVSRDDRLTSLDYFNKSRQCILITTDVSARGLDFQDXINQYNVYL
LRRMSQLEDLISKMWMLSYC
Run BLAST on NCBI

transcript from alignment at scaffold_58:259924..262642-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070941 ID=TCONS_00070941|Name=TCONS_00070941|organism=Clytia hemisphaerica|type=transcript|length=2719bp|location=Sequence derived from alignment at scaffold_58:259924..262642- (Clytia hemisphaerica)
ATTTTTCAGTTAAACAAAATCAAAATATTGAAAATAAACAAACACAGCAC
TATCCTGTAATGTTTGTATTAAAACCGTTTACTACAACAACTTGGTCCAA
ATATGTTTATTGTAAGCATCAAATCAGACGGTGTTTATCATTCACCGACC
TCTCCTTAGATGTCTCATTGGTTCGGAAATTGAGGTCTTTTGAAATCAGG
ACTCCAACAGCCATCCAAGAAAAGGTATCAAACTTTGCATTTTCAGAATA
AGATAAATTAAGGGAGACAGTCTTTTTTGAGAATGCCGAGAGTATCTTTT
TAGGAAAATTATAACTTGATGGAAACTCTCAGATATCATCATATTATCCT
CAAAAAAAGTTCCTTCGACTAACGCCTAATGTGGTTTTTTAACGAAATGG
AACAATACTACTCAAATTTTAGAAGTTGCACTTACTCATCTTATTTAAGT
CATAAGAATTGAAGCTAATCCCTCTGTTACCATCTTGTGTTTTCAGTGCT
GTGAGCTAATGTTGAAGGGACAAAATCTGGTGTTGAATTCAGAGACCGGA
AGTGGCAAAACCCTTGGTGAGCAAAATCATTTCAGTACTGTCAAGAACTG
ACTCAAGAAAAATGTTCCTTGTAAAAAATCATTGCTTTATTTCTGAAGTG
GGACAAGAAGCTCTTTGAAGTCGCTTGCTTCGCATATATTGTATTTGATT
ATCTTTCAGCGTATGCTGTACCAATAGTCCAAAGGATTCAAGAAAGGAGG
AGATTAAAGCAACAAAAACCACACCCTTCAGCTGTTGTTCTTCTACCCAG
TGTCGAATTGTGTTATCAGGTATTTGTACTAATATTTTCCAAAAATTTTA
TTTTTATTTATTTTTATCTAACTACGAGTTGTTGACCTGCTTAAGGTATA
ATTAGTCCTTACGTAATTGCTTAAGCTTTTAAGGTTTTAATGTTGTCTTG
GCATGATTGGCTGACTAAACCAAAAATTACTAATTTATATCGCTTTTTGG
TCTTGGTCTTTTATCATCACATCTCTTTTTTTTGAAGGTTGGAGATGTCT
TTCGGTCTATGTTAGGAGTGAACGTTTCTTTAGTCACCAGTGATATTCCA
ATGCGTTTGAAGAATACAGATGTTGTTGTGACAACACCACACGCCCTCTC
CACCTACCCTTATAATGTTTTGAACGAAACGGAAACGATCATTATTGATG
AAGCTGATATTTTAATCGATAAACGAATCGGGAAACATGGTCGTAAGGAT
CCTTTGTTTCGTCTTATGAATCATATGTTGGATATGGAGAATAAGACGTT
TGACCACGATCGACAGTTCGTTTTTGTTGGTGCGACCATGCCTGATTCTG
AGGTCAAGAAATCACGTAAGGCCATGACATATATACGACATTGGGTTCCG
GATATACAGATGGTTCGAGGAGACGAAGCTCACATGATGCTGTCCAGGCT
AGATATGATTTATATGGATGTTGATAGAGGAAACAAGTTAAAATATTTCG
TTAAAGCTGTCTCACAGCTTGGTACTGAGAATTTCAAAATGCTCGTTTTC
GTTGATACTGTAAAAACAGCTCAAAAGTTCTTTCAGGATTTGACTCGGAT
CGATCAGCACCATGGATCCACTATTGAAAAAGACACATTCCCAGAACAAT
TGTTACTTTTTCAGAAGAGATGGACTGATAGCTTGTTACTTTTACATCGT
GACGTTTCAAGAGATGACCGTCTGACTTCTTTGGATTATTTTAATAAATC
AAGACAATGTATACTTATTACGACGGATGTCTCAGCTAGAGGACTTGATT
TCCAAGATGTNATAAATCAATACAATGTATACTTATTACGACGGATGTCT
CAGCTCGAGGACTTGATTTCCAAGATGTGGATGTTGTCCTACTGTTAGAT
TTTGCGAAGAATGTTACTGATCTGATACATCGAGTTGGTAGAACTGCACG
CATGGGAAAACAAGGCAAAGGTATAGTTTTTTTTGGATTCTAGATATATT
GTCGTAACTAAGACCATCTGAGCCCCCTAAAGTATCATTCCTATGGACAC
TTCTGGTAATTTTTTCATTTCATGTATTTGTATCCTCATTTCTGATTCAT
TTTATACTTTCATTTTTCATTTATCGTTCTTTTTCTAGTTATCAATTTTG
TTACAACTGAAGACCAAAGACTTGCCTCACTTATTCAAGAATACTCTGCA
TCTGGTGAAAGTTTAGATCGTCTTTTCAGCCGACGCAGAGGACTTGGGAA
AGCACTTAAGAGGATAGATGAAGCCAGCACTGAAGCCGCTTTATGAGACT
TTTCTATATTATTTTTGTATCGTTTTTGAATTTTTGCTACTTCTATTTTC
ATATACATGGAGCGAGGATTGTGACGATCGCTTTTGTGACCGTAACAGCC
TTACTTTCATTTTCCAAGATCTGCAATGGTTCGAGCTAAGTCCTAGGTTT
ACTAACCTGGTAGGCTTTTGGTTAGTTTCAAATAATAAAACCTGGTCTAC
TCATTCAGTAAGAAATCTAAGAAATGAGATGTTACAAACCGTATCCATTT
TAACGGGTGACATAATTAAGGAGGAAAACCATTCAGTTTAATTACCATAC
ACCGCACAAGTTGTCAAGGCAACGGGTCAAGGTTTAGATTGATAGATGAG
GTTTATTAAATGACATTTATTTTTGTACATTACTTATTTAGAAAGAGGAT
TTTTTATGTTTGTATAAAT

Coding sequence (CDS) from alignment at scaffold_58:259924..262642-

>TCONS_00070941 ID=TCONS_00070941|Name=TCONS_00070941|organism=Clytia hemisphaerica|type=CDS|length=1263bp|location=Sequence derived from alignment at scaffold_58:259924..262642- (Clytia hemisphaerica)
TTTTCAGTTAAACAAAATCAAAATATTGAAAATAAACAAACACAGCACTA
TCCTGTAATGTTTGTATTAAAACCGTTTACTACAACAACTTGGTCCAAAT
ATGTTTATTGTAAGCATCAAATCAGACGGTGTTTATCATTCACCGACCTC
TCCTTAGATGTCTCATTGGTTCGGAAATTGAGGTCTTTTGAAATCAGGAC
TCCAACAGCCATCCAAGAAAAGTGCTGTGAGCTAATGTTGAAGGGACAAA
ATCTGGTGTTGAATTCAGAGACCGGAAGTGGCAAAACCCTTGCGTATGCT
GTACCAATAGTCCAAAGGATTCAAGAAAGGAGGAGATTAAAGCAACAAAA
ACCACACCCTTCAGCTGTTGTTCTTCTACCCAGTGTCGAATTGTGTTATC
AGGTTGGAGATGTCTTTCGGTCTATGTTAGGAGTGAACGTTTCTTTAGTC
ACCAGTGATATTCCAATGCGTTTGAAGAATACAGATGTTGTTGTGACAAC
ACCACACGCCCTCTCCACCTACCCTTATAATGTTTTGAACGAAACGGAAA
CGATCATTATTGATGAAGCTGATATTTTAATCGATAAACGAATCGGGAAA
CATGGTCGTAAGGATCCTTTGTTTCGTCTTATGAATCATATGTTGGATAT
GGAGAATAAGACGTTTGACCACGATCGACAGTTCGTTTTTGTTGGTGCGA
CCATGCCTGATTCTGAGGTCAAGAAATCACGTAAGGCCATGACATATATA
CGACATTGGGTTCCGGATATACAGATGGTTCGAGGAGACGAAGCTCACAT
GATGCTGTCCAGGCTAGATATGATTTATATGGATGTTGATAGAGGAAACA
AGTTAAAATATTTCGTTAAAGCTGTCTCACAGCTTGGTACTGAGAATTTC
AAAATGCTCGTTTTCGTTGATACTGTAAAAACAGCTCAAAAGTTCTTTCA
GGATTTGACTCGGATCGATCAGCACCATGGATCCACTATTGAAAAAGACA
CATTCCCAGAACAATTGTTACTTTTTCAGAAGAGATGGACTGATAGCTTG
TTACTTTTACATCGTGACGTTTCAAGAGATGACCGTCTGACTTCTTTGGA
TTATTTTAATAAATCAAGACAATGTATACTTATTACGACGGATGTCTCAG
CTAGAGGACTTGATTTCCAAGATGTNATAAATCAATACAATGTATACTTA
TTACGACGGATGTCTCAGCTCGAGGACTTGATTTCCAAGATGTGGATGTT
GTCCTACTGTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044094XLOC_044094Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070941-exon-scaffold_58-1575043694:262419..262642TCONS_00070941-exon-scaffold_58-1575043694:262419..262642Clytia hemisphaericaexon
TCONS_00070941-exon-scaffold_58-1575043694:262077..262146TCONS_00070941-exon-scaffold_58-1575043694:262077..262146Clytia hemisphaericaexon
TCONS_00070941-exon-scaffold_58-1575043694:261824..261933TCONS_00070941-exon-scaffold_58-1575043694:261824..261933Clytia hemisphaericaexon
TCONS_00070941-exon-scaffold_58-1575043694:260673..261605TCONS_00070941-exon-scaffold_58-1575043694:260673..261605Clytia hemisphaericaexon
TCONS_00070941-exon-scaffold_58-1575043694:259924..260504TCONS_00070941-exon-scaffold_58-1575043694:259924..260504Clytia hemisphaericaexon
TCONS_00070941-exon-scaffold_58-1510915933:262419..262642TCONS_00070941-exon-scaffold_58-1510915933:262419..262642Clytia hemisphaericaexon
TCONS_00070941-exon-scaffold_58-1510915933:262077..262146TCONS_00070941-exon-scaffold_58-1510915933:262077..262146Clytia hemisphaericaexon
TCONS_00070941-exon-scaffold_58-1510915933:261824..261933TCONS_00070941-exon-scaffold_58-1510915933:261824..261933Clytia hemisphaericaexon
TCONS_00070941-exon-scaffold_58-1510915933:260673..261605TCONS_00070941-exon-scaffold_58-1510915933:260673..261605Clytia hemisphaericaexon
TCONS_00070941-exon-scaffold_58-1510915933:259924..260504TCONS_00070941-exon-scaffold_58-1510915933:259924..260504Clytia hemisphaericaexon
TCONS_00070941-exon-scaffold_58-1491911889:262419..262642TCONS_00070941-exon-scaffold_58-1491911889:262419..262642Clytia hemisphaericaexon
TCONS_00070941-exon-scaffold_58-1491911889:262077..262146TCONS_00070941-exon-scaffold_58-1491911889:262077..262146Clytia hemisphaericaexon
TCONS_00070941-exon-scaffold_58-1491911889:261824..261933TCONS_00070941-exon-scaffold_58-1491911889:261824..261933Clytia hemisphaericaexon
TCONS_00070941-exon-scaffold_58-1491911889:260673..261605TCONS_00070941-exon-scaffold_58-1491911889:260673..261605Clytia hemisphaericaexon
TCONS_00070941-exon-scaffold_58-1491911889:259924..260504TCONS_00070941-exon-scaffold_58-1491911889:259924..260504Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070941-proteinTCONS_00070941-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:259924..262642 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
22.0664	20.8295	7.4417	6.23485	4.4625	3.25284	5.94551	6.25267	7.02777	5.95444	9.27038	8.64235	6.10975	7.20314	7.14929	10.4948	12.0431	14.185	5.71589	7.33739	8.09983	8.63958	20.0261	16.231	4.78671	5.33865	7.89382	4.50096	9.39231	11.9663
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR014001Helicase_ATP-bd
IPR001650Helicase_C
IPR011545DEAD/DEAH_box_helicase_dom
IPR014014RNA_helicase_DEAD_Q_motif
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070941 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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