TCONS_00070946 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070946
Unique NameTCONS_00070946
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length357

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070946 ID=TCONS_00070946|Name=TCONS_00070946|organism=Clytia hemisphaerica|type=transcript|length=357bp
TAGCTTTTGGAAACCTAAACAACAACTGGCTGCTCAAATTACAGAAAAGT
CGAATGTTCCAGGAGTTTATGTGATTGGTGTCACTAACAAACCATGGAAT
CTCGACTCCACTTTCAAACAAAGTTTCGATCGATGTGTGGGTGTGACGTT
ACCAGACCTTCCTTCAAGAATCAAGATTTTGGATTCTCATCTCAAGATGA
TACAACATTCTTTGAACGAACGACAAATGCTTCAACTGGCCCACCAAACT
GACGGATTTTCAGGAGCAGACATAAGCACGCTTCTCCACGACGCTTTGAT
GCTTCCTGTGTATCGCTTACAAAATGCAACTCACTTCAGAATGGTAAATT
TCGAACT
Run BLAST on NCBI

transcript from alignment at scaffold_58:310574..311717-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070946 ID=TCONS_00070946|Name=TCONS_00070946|organism=Clytia hemisphaerica|type=transcript|length=1144bp|location=Sequence derived from alignment at scaffold_58:310574..311717- (Clytia hemisphaerica)
TAGCTTTTGGAAACCTAAACAACAACTGGCTGCTCAAATTACAGGTATAC
TTGTATTGTAATATCTCCCTTAGCATTAAAATCAGAAGTTCTTCAATTAA
AGGCTTCCAGGCATGCTTGCAGGTGATCCAAGATTTAAATTTTCGTCTTA
TTTCCCCATTATACGTCGACTTATCATATGGGGAATTATTATATGATGCG
AATTTTAATTTTAGTAAGAATTCTCATTTTATGCTCTAGTGGATGAAAGG
GATAGATAGAAGGTAGTGAAGTCCCCTCAACATGCCATACTCTAGTTTAA
TGTCATACTTTCATTTCAACAATCATTTTTTAGTTGGTGCAAGGAGTGTG
GATTAAACCCTTATCTTCCTCTTCTTTCAGAAAAGTCGAATGTTCCAGGA
GTTTATGTGATTGGTGTCACTAACAAACCATGGAATCTCGACTCCACTTT
CAAACAAAGGTACAGAAGTTTCTAGATAAGATAGAGTCGATTTTTTTACG
TGGATATCCTAGTAGTCCAGGACTTTTAGACAGTCTTTCGATTGTTTTCA
TGGGGTCCACAAACAGCCGGCTAGGCCATCTATCAACTAAACGAAACATT
GGAAGGAGCGGGGCTTTTTCAATAAGCAATTGCTTCTTTTCCTTCCTAGT
TTCGATCGATGTGTGGGTGTGACGTTACCAGACCTTCCTTCAAGAATCAA
GATTTTGGATTCTCATCTCAAGATGATACAACATTCTTTGAACGAACGAC
AAATGCTTCAACTGGCCCACCAAACTGACGGGTATAACTATTATTTTCTT
TTTGTTGTCGTGCATAGAGTACTTTTGTGAACTGCGTTATCGGGATTTTA
AAATGCTAGAGAAGCTTTTGTAATATAATGGAAATTTGCCGAGAAAAAAC
TAAGATCATCTGTCAGCAATGGTCAAAACTTTTACAGAAAGTCGTACTTT
CTCCTGACATGGAAAAAAATATTTCGTAAAAGTTTTACAATGCTCAATAT
GCTCTCGATAATTTCATCTGGATCATTTCTTGTTTTTCACAGATTTTCAG
GAGCAGACATAAGCACGCTTCTCCACGACGCTTTGATGCTTCCTGTGTAT
CGCTTACAAAATGCAACTCACTTCAGAATGGTAAATTTCGAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044098XLOC_044098Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070946-exon-scaffold_58-1575043694:311674..311717TCONS_00070946-exon-scaffold_58-1575043694:311674..311717Clytia hemisphaericaexon
TCONS_00070946-exon-scaffold_58-1575043694:311259..311337TCONS_00070946-exon-scaffold_58-1575043694:311259..311337Clytia hemisphaericaexon
TCONS_00070946-exon-scaffold_58-1575043694:310937..311068TCONS_00070946-exon-scaffold_58-1575043694:310937..311068Clytia hemisphaericaexon
TCONS_00070946-exon-scaffold_58-1575043694:310574..310675TCONS_00070946-exon-scaffold_58-1575043694:310574..310675Clytia hemisphaericaexon
TCONS_00070946-exon-scaffold_58-1510915933:311674..311717TCONS_00070946-exon-scaffold_58-1510915933:311674..311717Clytia hemisphaericaexon
TCONS_00070946-exon-scaffold_58-1510915933:311259..311337TCONS_00070946-exon-scaffold_58-1510915933:311259..311337Clytia hemisphaericaexon
TCONS_00070946-exon-scaffold_58-1510915933:310937..311068TCONS_00070946-exon-scaffold_58-1510915933:310937..311068Clytia hemisphaericaexon
TCONS_00070946-exon-scaffold_58-1510915933:310574..310675TCONS_00070946-exon-scaffold_58-1510915933:310574..310675Clytia hemisphaericaexon
TCONS_00070946-exon-scaffold_58-1491911889:311674..311717TCONS_00070946-exon-scaffold_58-1491911889:311674..311717Clytia hemisphaericaexon
TCONS_00070946-exon-scaffold_58-1491911889:311259..311337TCONS_00070946-exon-scaffold_58-1491911889:311259..311337Clytia hemisphaericaexon
TCONS_00070946-exon-scaffold_58-1491911889:310937..311068TCONS_00070946-exon-scaffold_58-1491911889:310937..311068Clytia hemisphaericaexon
TCONS_00070946-exon-scaffold_58-1491911889:310574..310675TCONS_00070946-exon-scaffold_58-1491911889:310574..310675Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:310574..311717 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.12932e-06	1.25104	1.06227	0	2.8575	2.26799	11.1687	6.95217	3.36655	5.2004	8.90248	2.74437	4.1624	4.73886	2.74035	2.65176	5.6446	9.97813	4.72758	13.9434	3.29894	0	3.17717	0.965575	16.3778	4.1104	0	5.04984	10.7349	0
Blast
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BLAST of TCONS_00070946 vs. Swiss-Prot (Human)
Match: VPS4B (Vacuolar protein sorting-associated protein 4B OS=Homo sapiens GN=VPS4B PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 2.144e-23
Identity = 42/95 (44.21%), Postives = 63/95 (66.32%), Query Frame = 2 
Query:   62 GVYVIGVTNKPWNLDSTFKQSFDRCVGVTLPDLPSRIKILDSHLKMIQHSLNERQMLQLAHQTDGFSGADISTLLHDALMLPVYRLQNATHFRMV 346
            G+ V+G TN PW LDS  ++ F++ + + LP+  +R  +   HL   Q+SL E    +L  +TDG+SGADIS ++ DALM PV ++Q+ATHF+ V
Sbjct:  271 GILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKKV 365
The following BLAST results are available for this feature:
BLAST of TCONS_00070946 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
VPS4B2.144e-2344.21Vacuolar protein sorting-associated protein 4B OS=... [more]
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