TCONS_00070958 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070958
Unique NameTCONS_00070958
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3114

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070958 ID=TCONS_00070958|Name=TCONS_00070958|organism=Clytia hemisphaerica|type=transcript|length=3114bp
CTGTGTGATTGATGATTTTAGTTTTTCAAGACAATATCTGTTCCCGTcat
agattgaaaaaaaataaaatggaaaatgaGAATGAAGAAAGTGTGGTTGC
GATACCAAAGGTTGAGAAACCATTGCAACAATTATCTGTCAATGGACCGG
GGCTTCATCAACATGATATACTTGAATCAGAAGTCTTCTGTTTGTCTTCA
CGTCCAGACATTTTAAATGGAATGATGAAATCACTCTCCTCGTTGAGACA
AGAGGAGTCATTATGTGACGTTACATTGATTGTTGGTAGCACGTCTATCA
AAGCTCATNCGTTGAGACAAGATGAGTCATTATGTGACGTTACATTGATT
GTTGGTAGCACGTCTATCAAAGCTCATAAAATTGTGCTTGCAGCAGCTAC
ACCTTATTTCAATGCTATGTTTACTAATCAGATGCTAGAGAGCTCTTTAC
AAGAAGTGACTATCCAAGAACTCGATGCTCAATGTATTGTTGAACTTGTC
AATTTTATTTACGGTGAAAACCTTATTGTGAGGACTGAGAATGTACAAAA
TTTATTGTCGGCTGCTTCGCTGTTACAAATAACATGTGTTAAAGATGCCT
GTGTAAGCTTCCTAATGAAGAAATTACATCCAGAGAATTGTTTAACTGTC
CGCCATTTAGCAGATATGTATTCGGCTGCTGAACTTCTACAAGCTGCTAA
TTCTtttcttgacaaaaattttgTGGATGTTTCACAATGTAATGAATTTT
TGCAGTTGCAGTTTGATGATTTGGCTGAACTGATCAAGAAAGATGATTTG
AATATTCGGTCTGAGGAGCAAATTTTCGAAGCTGTGCTTTCTTGGGTGAA
AACAGATTGTGAAGGACGGAAAGGACATTTACCAGAACTGTTAAAATACG
TCCGTTTACCACTGTTGTCACCTCAATATTTAAGTGATCGAGTGTTATCT
GAGGAGATTATTCGTAGCAATATTGTGTGTAGAGATCTAATCGATGAAGC
AAAAGACTTCATGTTAATGCCTGAACgcagaaaacatttaaaaagtgaAC
GCACTTTACCTCGACGTTGTAGCGAGGCGGCTGGTTTGATTTATATTGTT
GGTGGTTTAACGTCTTCTGGGGAATCGTTATCCACTGTCGAAAAGTATGA
TACAATCTTAGGGAAATGGACACCGGTTTTACCAATGGCTATACAAAGGA
GTAGAGTGGGTGTGGCAATCTTGGATGGGAAATTGTATGCTATTGGCGGT
TTCGATGGTAACGTACGGTTGAATGATGTGGAAAGATATGACCCCAATAC
AAACAGtTGGAAGAAAGTATGTCCAATGAACATCCGTCGAAGTGCAGTAG
GAGCTGCAGTGTTGGCGAACAAGATCTATGTTGTGGGTGGTTATGATGGT
AATTCGTCATTGAACAGTGTGGAATGTTACGATTCTGAAATGAACCAATG
GAAATTCGTTGCGTCCATGTCAACGTTGAGAAGTGCAGCCGGTGTCACCT
CGCTCAATGGTAAACTGTACAGTGCTGGTGGCCACGATGGATTGACCATA
TTTTCTTCAGTTGAAGCTTACGATAGCACGCTCCGTCAATGGCGTCTTGT
CGCTCCTATGTCCGTCAGAAGATGTCGTCTCGGACTTACCGTCCTTAACA
GTCGTATTTACGCGACGGGAGGTTACGATGGATCCTCGTTTCTAAGCTCA
GTCGAATATTACGATATTTGTAACGACCAATGGATTTACGTTGCACCGAT
GACGAAACGTCGTAGCCGAGTATCCTCGGTCACTCTCGGTGGCAAAATTT
TCGCTGTCGGAGGATATGACGGAGCAACAAACTTGAGCACTATAGAGACT
TATGATCCGTGGGCGAATGAATGGActtcggagacagagatgggtATGCA
TGATGGTGGTGTGGGCGTGGGCGTTTTACCACGTTTAACTTGAGCAATGC
ATCAAAGCGAAACCTATATTCGAAGTCATTATTTGATGTATCGGGATGCA
TTTTAGCTTTTGGATATTAAACCAACGGAAAATTTAATAAGATTGTCCTT
GTTCGGAAACAGACTTTTTCTATACGTTTGTATTGGAACAGAATTTCCAG
TGACATTTAAAGATTATAATCGGACAAGATCTATTCGGAAAAGTTTAATT
TCCAATCATGAACGTCTGTTGTATTACCAACAATAACATTACAGTtcact
gtttttattttttatacgtGTTTGATTGATTATGTTTAAATTCATTATGT
GTACAGCATAACCTAAACTACgatgttatgttttttttttcgagttaaaG
TTTGCTCAAAAGCGCATTCTCATTTTCTTCGCATATAATTCAATAATAGA
ATTGTCAACAACAGGCATGTCGGCCCTAATAGCACAccgctatgcaaacg
tcataattattacttttaacatttgaccAAAATTCAATCTCACAATCCTT
TTCATGTTGATTCGTAATGCGTTTTGTATTGGCAATAAGTGTAATTGACT
TACAAAAGCACTTAATGCAAGGGATGATTGGACTAAAACTTGGCCAAGCA
GTTattttgatgtctatttttagaatcactgCGGTACGCTATTGGCTATG
GTGGATTAAGAGTGGGCTTAAAAGGAGTCTATAAGTTATGTCGGTATAAG
TGCGAAAATGATTTCACATGGTCCCTTTAAAAACtatatttcatttttac
ttTATATTTGTGAATTGTTGTTGCATGATAGATACCTCGTGCGATGAGAT
ACAACCGAAGGCTAGAGAGGAATCGTCAACATTTTCCAGGCAATTAAGAG
TGATGTTTTAAGATTCGCGCCACATCTCGGATGATGAATCTAGAACTTTC
TTTGGTTTTTTGCGTTTCACGTTTTTCTAATGTTGCTTCCAACCAAGGGT
TGTATGAAAAGCACGCGGGCTGCACAACTTATGGAGAAAATAAATGGCTT
CGATTCCTTAATATAAGATTCCGCTCTAGCCTTTAGCTATATCTCATTTT
GTCTCGTGTACCCAGAACAAAGAATATTAGATTATTAAAGTAGGACAATA
GATAATACCATAATGTaaatatatttgaatttttaGCCCAataataattt
ataatttagCGGAA
Run BLAST on NCBI

protein sequence of TCONS_00070958-protein

>TCONS_00070958-protein ID=TCONS_00070958-protein|Name=TCONS_00070958-protein|organism=Clytia hemisphaerica|type=polypeptide|length=643bp
MILVFQDNICSRHRLKKNKMENENEESVVAIPKVEKPLQQLSVNGPGLHQ
HDILESEVFCLSSRPDILNGMMKSLSSLRQEESLCDVTLIVGSTSIKAHX
LRQDESLCDVTLIVGSTSIKAHKIVLAAATPYFNAMFTNQMLESSLQEVT
IQELDAQCIVELVNFIYGENLIVRTENVQNLLSAASLLQITCVKDACVSF
LMKKLHPENCLTVRHLADMYSAAELLQAANSFLDKNFVDVSQCNEFLQLQ
FDDLAELIKKDDLNIRSEEQIFEAVLSWVKTDCEGRKGHLPELLKYVRLP
LLSPQYLSDRVLSEEIIRSNIVCRDLIDEAKDFMLMPERRKHLKSERTLP
RRCSEAAGLIYIVGGLTSSGESLSTVEKYDTILGKWTPVLPMAIQRSRVG
VAILDGKLYAIGGFDGNVRLNDVERYDPNTNSWKKVCPMNIRRSAVGAAV
LANKIYVVGGYDGNSSLNSVECYDSEMNQWKFVASMSTLRSAAGVTSLNG
KLYSAGGHDGLTIFSSVEAYDSTLRQWRLVAPMSVRRCRLGLTVLNSRIY
ATGGYDGSSFLSSVEYYDICNDQWIYVAPMTKRRSRVSSVTLGGKIFAVG
GYDGATNLSTIETYDPWANEWTSETEMGMHDGGVGVGVLPRLT
Run BLAST on NCBI

transcript from alignment at scaffold_58:476176..480412-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070958 ID=TCONS_00070958|Name=TCONS_00070958|organism=Clytia hemisphaerica|type=transcript|length=4237bp|location=Sequence derived from alignment at scaffold_58:476176..480412- (Clytia hemisphaerica)
CTGTGTGATTGATGATTTTAGTTTTTCAAGACAATATCTGTTCCCGTCAT
AGATTGAAAAAAAATAAAATGGAAAATGAGAATGAAGAAAGTGTGGTTGC
GATACCAAAGGTTGAGAAACCATTGCAACAATTATCTGTCAATGGACCGG
GGCTTCATCAACATGATATACTTGAATCAGAAGTCTTCTGTTTGTCTTCA
CGTCCAGACATTTTAAATGGAATGATGAAATCACTCTCCTCGTTGAGACA
AGAGGAGTCATTATGTGACGTTACATTGATTGTTGGTAGCACGTCTATCA
AAGCTCATNCGTTGAGACAAGATGAGTCATTATGTGACGTTACATTGATT
GTTGGTAGCACGTCTATCAAAGCTCATAAAATTGTGCTTGCAGCAGCTAC
ACCTTATTTCAATGCTATGTTTACTAATCAGATGCTAGAGAGCTCTTTAC
AAGAAGTGACTATCCAAGAACTCGATGCTCAATGTATTGTTGAACTTGTC
AATTTTATTTACGGTGAAAACCTTATTGTGAGGACTGAGAATGTACAAAA
TTTATTGTCGGCTGCTTCGCTGTTACAAATAACATGTGTTAAAGATGCCT
GTGTAAGCTTCCTAATGAAGAAATTACATCCAGAGAATTGTTTAACTGTC
CGCCATTTAGCAGATATGTATTCGGCTGCTGAACTTCTACAAGCTGCTAA
TTCTTTTCTTGACAAAAATTTTGTGGATGTTTCACAATGTAATGAATTTT
TGCAGTTGCAGTTTGATGATTTGGCTGAACTGATCAAGAAAGATGATTTG
AATATTCGGTCTGAGGAGCAAATTTTCGAAGCTGTGCTTTCTTGGGTGAA
AACAGATTGTGAAGGACGGAAAGGACATTTACCAGAACTGTTAAAATACG
TCCGTTTACCACTGTTGTCACCTCAATATTTAAGTGATCGAGTGTTATCT
GAGGAGATTATTCGTAGCAATATTGTGTGTAGAGATCTAATCGATGAAGC
AAAAGACTTCATGTTAATGCCTGAACGCAGAAAACATTTAAAAAGTGAAC
GCACTTTACCTCGACGTTGTAGCGAGGCGGCTGGTTTGATTTATATTGTT
GGTGGTTTAACGTCTTCTGGGGAATCGTTATCCACTGTCGAAAAGTATGA
TACAATCTTAGGGAAATGGACACCGGTTTTACCAATGGCTATACAAAGGA
GTAGAGTGGGTGTGGCAATCTTGGATGGGAAATTGTATGCTATTGGCGGT
TTCGATGGTAACGTACGGTTGAATGATGTGGAAAGATATGACCCCAATAC
AAACAGGTATGTTAGTTGTCAATGAAATTGACATACATATTTTAATAATT
CTTTTTGCTTCTATTTGAAAAGGGTTAACAGCCTACTGTTTGGTAAGAAG
TTTCCCTTGTGGTAGTGAAGGAAAAGTGAATATCTTACCTAGTATGTTAC
TCTTTGAAGTTTTCAAAAGATTGAAAATAAAAAGAAACTTCTATTTCTGA
ACCACAATATTTTCGGGCAATACCTCATATTATATATAGTTCTTGCTTTT
GCACATATCAACTGTCCAAGATCTAGACCAAGTCTAGGGTCATTGACTTC
CCTTCAACTAAGAATTATACTTGTATTCATGATATGCACCATTGCAATGT
CTTCTGACATTACATCACGAACCCAACAGCTGATTGGTTGTGAGTGATGT
AAAATCAGTCAATACGTCACTTGCAACCAATCAGCTGTTGGGTCCGTGGA
AGACATTGCAATGGTGCATATCATGAATTATAACATGATCTTTTTTTCTT
TTGTCAGTTGGAAGAAAGTATGTCCAATGAACATCCGTCGAAGTGCAGTA
GGAGCTGCAGTGTTGGCGAACAAGATCTATGTTGTGGGTGGTTATGATGG
TAATTCGTCATTGAACAGTGTGGAATGTTACGATTCTGAAATGAACCAAT
GGAAATTCGTTGCGTCCATGTCAACGTTGAGAAGTGCAGCCGGTGTCACC
TCGCTCAATGGTATGTGTTCTTTTCCTTTACTTTTCTTTGTTTTATTGGA
ATCTTGATTTCCATGTCACTTTATGTAAAAATAATACTGTTTAGATTTTC
GTTAAGCTGGGGATTTCATTATTATGCATCACTTCAGCTAGAATTAAAAA
AGGTCGCTGTAATTTTATATTTGGATATTGATTTTTGGTTAGGCGAGGCT
AATCTAATTTGTTGTTTTACGGGCCAAGCTATCCAAAAAAGACGGTCGGT
CGGTCGGCGAAAAAAATGAGAATAAAAGTATAAAATCTCCTAAAGGGTCA
ACAAAAACTACTTCCTCTTGACAAAAATGCGAAGTAGAAAATAAAAAGGT
CGAATTCATGGATAAATTGAAAAATTGAACATAAAATTGGAAAAACTATC
AAAATTTTGAAAATTTGGCAGTCTGTAAGGCAATGAAAATAAAAATGTAC
TACCAAAATCAATTTCATTTTTATTTCGGTTTTGAATATCAAGGTCGGTC
AGGCCCGTAAAACAACTAACCAAATTTTGGTCTCGCCTTACAGAATTTTC
ATGAAAAAGACACAACTGTGAGTAAGTATTTAATATACTTTTGTGATTCA
TCTATGGTATTCTTTTCATTTCAATTTCTCAGGTAAACTGTACAGTGCTG
GTGGCCACGATGGATTGACCATATTTTCTTCAGTTGAAGCTTACGATAGC
ACGCTCCGTCAATGGCGTCTTGTCGCTCCTATGTCCGTCAGAAGATGTCG
TCTCGGACTTACCGTCCTTAACAGTCGTATTTACGCGACGGGAGGTTACG
ATGGATCCTCGTTTCTAAGCTCAGTCGAATATTACGATATTTGTAACGAC
CAATGGATTTACGTTGCACCGATGACGAAACGTCGTAGCCGAGTATCCTC
GGTCACTCTCGGTGGCAAAATTTTCGCTGTCGGAGGATATGACGGAGCAA
CAAACTTGAGCACTATAGAGACTTATGATCCGTGGGCGAATGAATGGACT
TCGGAGACAGAGATGGGTATGCATGATGGTGGTGTGGGCGTGGGCGTTTT
ACCACGTTTAACTTGAGCAATGCATCAAAGCGAAACCTATATTCGAAGTC
ATTATTTGATGTATCGGGATGCATTTTAGCTTTTGGATATTAAACCAACG
GAAAATTTAATAAGATTGTCCTTGTTCGGAAACAGACTTTTTCTATACGT
TTGTATTGGAACAGAATTTCCAGTGACATTTAAAGATTATAATCGGACAA
GATCTATTCGGAAAAGTTTAATTTCCAATCATGAACGTCTGTTGTATTAC
CAACAATAACATTACAGTTCACTGTTTTTATTTTTTATACGTGTTTGATT
GATTATGTTTAAATTCATTATGTGTACAGCATAACCTAAACTACGATGTT
ATGTTTTTTTTTTCGAGTTAAAGTTTGCTCAAAAGCGCATTCTCATTTTC
TTCGCATATAATTCAATAATAGAATTGTCAACAACAGGCATGTCGGCCCT
AATAGCACACCGCTATGCAAACGTCATAATTATTACTTTTAACATTTGAC
CAAAATTCAATCTCACAATCCTTTTCATGTTGATTCGTAATGCGTTTTGT
ATTGGCAATAAGTGTAATTGACTTACAAAAGCACTTAATGCAAGGGATGA
TTGGACTAAAACTTGGCCAAGCAGTTATTTTGATGTCTATTTTTAGAATC
ACTGCGGTACGCTATTGGCTATGGTGGATTAAGAGTGGGCTTAAAAGGAG
TCTATAAGTTATGTCGGTATAAGTGCGAAAATGATTTCACATGGTCCCTT
TAAAAACTATATTTCATTTTTACTTTATATTTGTGAATTGTTGTTGCATG
ATAGATACCTCGTGCGATGAGATACAACCGAAGGCTAGAGAGGAATCGTC
AACATTTTCCAGGCAATTAAGAGTGATGTTTTAAGATTCGCGCCACATCT
CGGATGATGAATCTAGAACTTTCTTTGGTTTTTTGCGTTTCACGTTTTTC
TAATGTTGCTTCCAACCAAGGGTTGTATGAAAAGCACGCGGGCTGCACAA
CTTATGGAGAAAATAAATGGCTTCGATTCCTTAATATAAGATTCCGCTCT
AGCCTTTAGCTATATCTCATTTTGTCTCGTGTACCCAGAACAAAGAATAT
TAGATTATTAAAGTAGGACAATAGATAATACCATAATGTAAATATATTTG
AATTTTTAGCCCAATAATAATTTATAATTTAGCGGAA

Coding sequence (CDS) from alignment at scaffold_58:476176..480412-

>TCONS_00070958 ID=TCONS_00070958|Name=TCONS_00070958|organism=Clytia hemisphaerica|type=CDS|length=1932bp|location=Sequence derived from alignment at scaffold_58:476176..480412- (Clytia hemisphaerica)
ATGATTTTAGTTTTTCAAGACAATATCTGTTCCCGTCATAGATTGAAAAA
AAATAAAATGGAAAATGAGAATGAAGAAAGTGTGGTTGCGATACCAAAGG
TTGAGAAACCATTGCAACAATTATCTGTCAATGGACCGGGGCTTCATCAA
CATGATATACTTGAATCAGAAGTCTTCTGTTTGTCTTCACGTCCAGACAT
TTTAAATGGAATGATGAAATCACTCTCCTCGTTGAGACAAGAGGAGTCAT
TATGTGACGTTACATTGATTGTTGGTAGCACGTCTATCAAAGCTCATNCG
TTGAGACAAGATGAGTCATTATGTGACGTTACATTGATTGTTGGTAGCAC
GTCTATCAAAGCTCATAAAATTGTGCTTGCAGCAGCTACACCTTATTTCA
ATGCTATGTTTACTAATCAGATGCTAGAGAGCTCTTTACAAGAAGTGACT
ATCCAAGAACTCGATGCTCAATGTATTGTTGAACTTGTCAATTTTATTTA
CGGTGAAAACCTTATTGTGAGGACTGAGAATGTACAAAATTTATTGTCGG
CTGCTTCGCTGTTACAAATAACATGTGTTAAAGATGCCTGTGTAAGCTTC
CTAATGAAGAAATTACATCCAGAGAATTGTTTAACTGTCCGCCATTTAGC
AGATATGTATTCGGCTGCTGAACTTCTACAAGCTGCTAATTCTTTTCTTG
ACAAAAATTTTGTGGATGTTTCACAATGTAATGAATTTTTGCAGTTGCAG
TTTGATGATTTGGCTGAACTGATCAAGAAAGATGATTTGAATATTCGGTC
TGAGGAGCAAATTTTCGAAGCTGTGCTTTCTTGGGTGAAAACAGATTGTG
AAGGACGGAAAGGACATTTACCAGAACTGTTAAAATACGTCCGTTTACCA
CTGTTGTCACCTCAATATTTAAGTGATCGAGTGTTATCTGAGGAGATTAT
TCGTAGCAATATTGTGTGTAGAGATCTAATCGATGAAGCAAAAGACTTCA
TGTTAATGCCTGAACGCAGAAAACATTTAAAAAGTGAACGCACTTTACCT
CGACGTTGTAGCGAGGCGGCTGGTTTGATTTATATTGTTGGTGGTTTAAC
GTCTTCTGGGGAATCGTTATCCACTGTCGAAAAGTATGATACAATCTTAG
GGAAATGGACACCGGTTTTACCAATGGCTATACAAAGGAGTAGAGTGGGT
GTGGCAATCTTGGATGGGAAATTGTATGCTATTGGCGGTTTCGATGGTAA
CGTACGGTTGAATGATGTGGAAAGATATGACCCCAATACAAACAGTTGGA
AGAAAGTATGTCCAATGAACATCCGTCGAAGTGCAGTAGGAGCTGCAGTG
TTGGCGAACAAGATCTATGTTGTGGGTGGTTATGATGGTAATTCGTCATT
GAACAGTGTGGAATGTTACGATTCTGAAATGAACCAATGGAAATTCGTTG
CGTCCATGTCAACGTTGAGAAGTGCAGCCGGTGTCACCTCGCTCAATGGT
AAACTGTACAGTGCTGGTGGCCACGATGGATTGACCATATTTTCTTCAGT
TGAAGCTTACGATAGCACGCTCCGTCAATGGCGTCTTGTCGCTCCTATGT
CCGTCAGAAGATGTCGTCTCGGACTTACCGTCCTTAACAGTCGTATTTAC
GCGACGGGAGGTTACGATGGATCCTCGTTTCTAAGCTCAGTCGAATATTA
CGATATTTGTAACGACCAATGGATTTACGTTGCACCGATGACGAAACGTC
GTAGCCGAGTATCCTCGGTCACTCTCGGTGGCAAAATTTTCGCTGTCGGA
GGATATGACGGAGCAACAAACTTGAGCACTATAGAGACTTATGATCCGTG
GGCGAATGAATGGACTTCGGAGACAGAGATGGGTATGCATGATGGTGGTG
TGGGCGTGGGCGTTTTACCACGTTTAACTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044103XLOC_044103Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070958-proteinTCONS_00070958-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070958-exon-scaffold_58-1575043694:479107..480412TCONS_00070958-exon-scaffold_58-1575043694:479107..480412Clytia hemisphaericaexon
TCONS_00070958-exon-scaffold_58-1575043694:478403..478605TCONS_00070958-exon-scaffold_58-1575043694:478403..478605Clytia hemisphaericaexon
TCONS_00070958-exon-scaffold_58-1575043694:476176..477780TCONS_00070958-exon-scaffold_58-1575043694:476176..477780Clytia hemisphaericaexon
TCONS_00070958-exon-scaffold_58-1510915933:479107..480412TCONS_00070958-exon-scaffold_58-1510915933:479107..480412Clytia hemisphaericaexon
TCONS_00070958-exon-scaffold_58-1510915933:478403..478605TCONS_00070958-exon-scaffold_58-1510915933:478403..478605Clytia hemisphaericaexon
TCONS_00070958-exon-scaffold_58-1510915933:476176..477780TCONS_00070958-exon-scaffold_58-1510915933:476176..477780Clytia hemisphaericaexon
TCONS_00070958-exon-scaffold_58-1491911889:479107..480412TCONS_00070958-exon-scaffold_58-1491911889:479107..480412Clytia hemisphaericaexon
TCONS_00070958-exon-scaffold_58-1491911889:478403..478605TCONS_00070958-exon-scaffold_58-1491911889:478403..478605Clytia hemisphaericaexon
TCONS_00070958-exon-scaffold_58-1491911889:476176..477780TCONS_00070958-exon-scaffold_58-1491911889:476176..477780Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:476176..480412 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.1889	11.7581	9.86849	8.26582	11.2887	7.73524	10.716	11.617	6.3968	7.48025	6.72273	4.42089	4.38804	4.91847	4.8578	4.65543	9.50627	6.77373	4.21487	4.31972	8.29063	9.5601	9.72782	9.05447	6.88258	7.94787	3.62957	2.12736	5.69294	6.62973
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006652Kelch_1
IPR011705BACK
IPR000210BTB/POZ_dom
IPR015915Kelch-typ_b-propeller
IPR017096BTB-kelch_protein
IPR011333SKP1/BTB/POZ
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00070958 vs. Swiss-Prot (Human)
Match: KLH18 (Kelch-like protein 18 OS=Homo sapiens GN=KLHL18 PE=1 SV=3)

HSP 1 Score: 562.762 bits (1449), Expect = 0.000e+0
Identity = 288/543 (53.04%), Postives = 374/543 (68.88%), Query Frame = 3 
Query:  312 LRQDESLCDVTLIVGSTSIKAHKIVLAAATPYFNAMFTNQMLESSLQEVTIQELDAQCIVELVNFIYGENLIVRTENVQNLLSAASLLQITCVKDACVSFLMKKLHPENCLTVRHLADMYSAAELLQAANSFLDKNFVDVSQCNEFLQLQFDDLAELIKKDDLNIRSEEQIFEAVLSWVKTDCEGRKGHLPELLKYVRLPLLSPQYLSDRVLSEEIIRSNIVCRDLIDEAKDFMLMPERRKHLKSERTLPRRCSEAAGLIYIXXXXXXXXXXXXXXXKYDTILGKWTPVLPMAIQRSRVGVAILDGKLYAIGGFDGNVRLNDVERYDPNTNSWKKVCPMNIRRSAVGAAVLANKIYVVGGYDGNSSLNSVECYDSEMNQWKFVASMSTLRSAAGVTSLNGKLYSAGGHDGLTIFSSVEAYDSTLRQWRLVAPMSVRRCRLGLTVLNSRIYATGGYDGSSFLSSVEYYDICNDQWIYVAPMTKRRSRVSSVTLGGKIFAVGGYDGATNLSTIETYDPWANEWTSETEMGMHDXXXXXXXLPRLT 1940
            +R+   LCDVTL +G     AH+IVLAA+ PYF+AMFTN M+E    E+ +Q +D   +  L+NF Y  NL +  +NVQ+LL  AS LQ+  +KDAC +FL ++LHP+NCL VR  A+    A L  AANSF+ ++FV+VS   EFL L  +D+ EL+ +D+LN++SEEQ+FEA L+WV+ D E R  +LPELL  +RLPL  PQ+LSDRV  ++++R    CRDL+DEAKD+ LMPERR HL + RT PR C+  AGLIY VGGL S+G+SL+ VE +D I   W    PM   RSRVGVA+++G LYAIGG+DG +RL+ VE Y+P T++W +V  MN +RSA+G  VL  +IYV GGYDGNSSL+SVE Y  E ++W  V SMS+ RSAAGVT   G++Y +GGHDGL IFSSVE Y+     W   A M  +RCR G   L S+++  GGYDGS FLS  E Y    DQW  + PM  RRSRVS V   G+++AVGGYDG +NLS++E YDP  + WT    M  H+GGVGVG +P LT
Sbjct:   31 IRRQGKLCDVTLKIGDHKFSAHRIVLAASIPYFHAMFTNDMMECKQDEIVMQGMDPSALEALINFAYNGNLAIDQQNVQSLLMGASFLQLQSIKDACCTFLRERLHPKNCLGVRQFAETMMCAVLYDAANSFIHQHFVEVSMSEEFLALPLEDVLELVSRDELNVKSEEQVFEAALAWVRYDREQRGPYLPELLSNIRLPLCRPQFLSDRVQQDDLVRCCHKCRDLVDEAKDYHLMPERRPHLPAFRTRPRCCTSIAGLIYAVGGLNSAGDSLNVVEVFDPIANCWERCRPMTTARSRVGVAVVNGLLYAIGGYDGQLRLSTVEAYNPETDTWTRVGSMNSKRSAMGTVVLDGQIYVCGGYDGNSSLSSVETYSPETDKWTVVTSMSSNRSAAGVTVFEGRIYVSGGHDGLQIFSSVEHYNHHTATWHPAAGMLNKRCRHGAASLGSKMFVCGGYDGSGFLSIAEMYSSVADQWCLIVPMHTRRSRVSLVASCGRLYAVGGYDGQSNLSSVEMYDPETDCWTFMAPMACHEGGVGVGCIPLLT 573
The following BLAST results are available for this feature:
BLAST of TCONS_00070958 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KLH180.000e+053.04Kelch-like protein 18 OS=Homo sapiens GN=KLHL18 PE... [more]
back to top