TCONS_00070968 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070968
Unique NameTCONS_00070968
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2012

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070968 ID=TCONS_00070968|Name=TCONS_00070968|organism=Clytia hemisphaerica|type=transcript|length=2012bp
GAGAAGCGTAAAGGTTTTGTCCTGTGAAGAAAAGTAAGTACCACAAGAAA
TCCAAGATGGCCCTGGCAGTTGCTTATATCCTACTGTCCATGGCAGCAAC
CATTAACACCCAACAACCTAACGATGATTCGAACCCCAACCTCATGGCAG
CCATGACAGGTTATAATATCTTAAAAGGAAACCCATTCTCAATGAACGCT
TTACATGACCCAGGATTCTTGGCATCTTATATCTTCAACCCATACACCAG
TAGTGGCGGACCACCAGGAATGGGCGATGGTTCGAGGCAGTTACACCCGG
GCGTTACAGTGAGAAACATTCGACAATGCGATTTGAGTTTGACCACTGAT
ACAATCACCACCATGAAAGAATATCAACGACAGGTTACCACGGAAACATC
AGCTGGCATGGAGTTTGCCAGTAACGTTGAAGCAGATGTCCAAGCATCAG
TGAATGGGATTGGTATCGACACCACAGTTCCTCCACTCGTCAAAAGCTCC
TTCTCCGCAAGCAACAGTTTTagagaaagtgaaaaattctTCTCACAAAA
CAAAGGTGTTGTTACACTCAATGATGCAACTTGTACCTCCTATACGGCCG
TCATCTCAGCATACAACCCGCCACCTTTCTCCGATAACTTTTTGAAAGCC
CTTATTGTTCTTCATAGAACAAGTTTCAAATCTGAAGCAGAAAAAGATCG
GGAATTTTATCGTTTTATTGACAACTTTGGTACACATTTCCTGTCACATG
CAACAATGGGTACACGGTTAGCAATCACACGAAAGTACACTTCGGACGAA
TATTCAAACTCAAAAGACGAAGCAATAAAGGACTGCAATGTTCAACAACT
TTCAGTATTTTTCGGACAACAAGTTGACAGCAAATTGGATCACTGCAAAG
CTGTTGATAAATCATCAAGCTCAAAGATCGAGAATATCTACGAGCGTGAA
TTCATCTCCAGCTATGGTAGTAAACCAGCTAAAGATCTAGTTGATTGGTC
AACACAAGACTTCCCAAACCCCTTACCAGTCCGTATGACATTAAGACCGA
TCCTTAATCTCTTCGGTACAACCTACATGAAACATCCATCAGTGAAACGC
CTTCGAATCCAaccaaaaaacattttgaaatggaTTGCACCACGTTACTA
TAACTTTTGcaataaatacaaaaacatcTTGGGCGTCAAAACCTGCAATG
CTGAAGCAGTCAAAGGGTGTGGCTGGAGTGATACATGCAACCGTAGGTCA
CAACACTGTATCAACGACAAGACAGACCCTAATGGATACAGATGTTGTGA
TATCAAGCAGTGTGCTGACCAGCCATGCAAGTATGGAGCGTGTCACGTCT
CAGGCAAATGCTCGTACGTCTGCAAATGTAGATGGGGCTATACAGGCAAA
CATTGTGAGCACGAAATCCTAACAGCATCCAGCCTGGAAATGGGTACTGA
TATTCTGATCGCAGCAAACCGGTACTTGTCACATGACCAAATGGCAAAGA
ACATTCAATTGTCTTTAGTAAAGCACTATGGAATCAAATTCACAGTTCTG
GTATATGATGATGTTTACGGGTATGGATTACACAACGTCCAGGGGACGCA
ATTTTACAGCAATTTCAGAGAATGGGGACACAATGTGGTTGTCGGCTACT
CACAAAATGATTTAGAATCAACACCAGAACAAATGGCCATGATCAAATGG
AGATTATTAGGAGCTGTCTTGAATCAAGGATGTCATTCATCAACTATCGT
CGAAAAAGTGAAGGATTTGCTGCATAAGTATAATATACCTTACAGTATGA
TCTTTTCCACTCCATGGGGAAATAAATTGCGTACATATTCGGATGTGGAA
TCTACATATTTCTTGAACTACGACTGTGGCGTTGGAAAGAAAGCCTCAAT
CGCTGTAATGCTAagatgaatttattttttaatttgtaaacTAATATAAG
AGTACTCATGTATTGTGATAATGTAATCATTTGcataaaataaaacattc
aTACGAAATAGC
Run BLAST on NCBI

protein sequence of TCONS_00070968-protein

>TCONS_00070968-protein ID=TCONS_00070968-protein|Name=TCONS_00070968-protein|organism=Clytia hemisphaerica|type=polypeptide|length=620bp
MALAVAYILLSMAATINTQQPNDDSNPNLMAAMTGYNILKGNPFSMNALH
DPGFLASYIFNPYTSSGGPPGMGDGSRQLHPGVTVRNIRQCDLSLTTDTI
TTMKEYQRQVTTETSAGMEFASNVEADVQASVNGIGIDTTVPPLVKSSFS
ASNSFRESEKFFSQNKGVVTLNDATCTSYTAVISAYNPPPFSDNFLKALI
VLHRTSFKSEAEKDREFYRFIDNFGTHFLSHATMGTRLAITRKYTSDEYS
NSKDEAIKDCNVQQLSVFFGQQVDSKLDHCKAVDKSSSSKIENIYEREFI
SSYGSKPAKDLVDWSTQDFPNPLPVRMTLRPILNLFGTTYMKHPSVKRLR
IQPKNILKWIAPRYYNFCNKYKNILGVKTCNAEAVKGCGWSDTCNRRSQH
CINDKTDPNGYRCCDIKQCADQPCKYGACHVSGKCSYVCKCRWGYTGKHC
EHEILTASSLEMGTDILIAANRYLSHDQMAKNIQLSLVKHYGIKFTVLVY
DDVYGYGLHNVQGTQFYSNFREWGHNVVVGYSQNDLESTPEQMAMIKWRL
LGAVLNQGCHSSTIVEKVKDLLHKYNIPYSMIFSTPWGNKLRTYSDVEST
YFLNYDCGVGKKASIAVMLR
Run BLAST on NCBI

transcript from alignment at scaffold_58:572836..576973-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070968 ID=TCONS_00070968|Name=TCONS_00070968|organism=Clytia hemisphaerica|type=transcript|length=4138bp|location=Sequence derived from alignment at scaffold_58:572836..576973- (Clytia hemisphaerica)
GAGAAGCGTAAAGGTTTTGTCCTGTGAAGAAAAGTAAGTACCACAAGTAA
GTATGTAAAAAACCGTTTATACGCTTTTTTTATAAGAATGGTGTTTTTCC
AATTCATCATGAATATTCTTAACTTTTTGGGAAGAATCATCCTGAAGAAT
TCTTACAGTCTTACAGTATTCTTAGGTTTGGATCCAAACCCAACCAAAAT
CTAGCATTCAATACATACCTCGAGCAAAAATTTATCATTTTTGTTCAACC
TGGGCATTTCAAGCTACCTCAAACCTACCCCAGACAATAAAATCAATTAT
TACTTTCGGTTGAACGTTTCACGTACACCAGCATCAAGAAATAGTAAAAA
TTTACTCTCATTGGTTGATAACTGCGCACTTTGACATATTAACCAATTGG
AGTTTGTTTATNCTTTTATAAAAAAATGACGTTATAATTCTCTAGGGATT
CGTATGATTTAAAACTGTTGTGCTTTTCTTTTACCCGGGGGGGGGGCAGT
CAGGCAAATTGACCGACGGGTATGTGCGGCGGTTAAGGGTATGTTTTTCA
AAATATTAGAAATGCACTGTAAGGGTGGACTTTTGATAAATGCACTGTAA
GGGTGGAAATTTCAGCAAATCTGGGGAAAATTGCAAATTTTTGCTCGAAA
ATGTTGATTTTTTATGCTCTAAAAGAGTTTAAAATTTGAAAAAATGCGCT
GTAAGGGTATGAATTTCATCGATTTTTTTCTGCACTGTAAGGGTGCGATT
CTAAAAGCCAATTTTTTCGCCGCACATACCGTCAGTTGGTAAACCCACTG
CCCCCCCCCCGGGCACGTACATCAGCAAGAAGTAGTAAAAATTATTTTTT
TCTTTTCTAGAGTTTCATCATTGTATTTTACAAGCTTCTAACAGTAATTC
TTTTTGTTTACTAAATCATCAAGGAAATCCAAGATGGCCCTGGCAGTTGC
TTATATCCTACTGTCCATGGCAGCAACCATTAACACCCAACAACCTAACG
ATGATTCGAACCCCAACCTCATGGCAGCCATGACAGGTTATAATATCTTA
AAAGGAAACCCATTCTCAATGAACGCTTTACATGACCCAGGATTCTTGGC
ATCTTATATCTTCAACCCATACACCAGTAGTGGCGGACCACCAGGAATGG
GCGATGGTTCGAGGCAGTTACACCCGGGCGTTACAGTGAGAAACATTCGA
CAATGCGATTTGAGTTTGACCACTGATACAATCACCACCATGAAAGAATA
TCAACGACAGGTGAAAATCATATCTTTTTTTTATATGATACTCCGGTAGG
GGGGAGTCAGGTAAATTAACCGGCGATGTTTTTCAAGATTGCAGAAATAC
ACTGAAAGCGTGGACTTTTTCATAAAGGGCGGAAGTTTCTAATTTTACCG
AAATTTCAGATTTTTTTAAGGGTGCGATTCTAGAAGCCGTTTTTTGCCGC
ACACACCGTCAGTTGGTAAACCCACTAATGCCTCTCCCCCCCGGGGTTGT
CTGTACACAAACCCAGTATCTACAGCTAATTTCAAATTTCATTGCCGTAG
ATGGTCTGTTGACATCATCTTTTCTCATTTGAGATTTTTCAAACCAACCG
CTACGATGAAGTATTGGTGAGAGAGGGGCTATTTATAAATCATACTTCAT
CGCAGAGGTCTCCGTACGGGAATTTCTTTATCAAACAGGCAATGCGCACA
GAGTGTACTACGAAGTGATAAAACGTGTGATGCACTCTGGTAAAGAGTAC
CCCCGGGTGATACTATAAACAATAAACCAGTATTTTTTCAAGGTCCATTT
CCAAACTGGAACAACAAATGCAGCAATCTTCCTATACTTATACAAGGGGG
GTTTCATGGTTGGCGGAGGAGCGGAATCGGCCCTTTTTTCGGACGGAGTG
GCGGAATTTGGCGAAAATTTAGACGGAATTACGGAAATTGGGTTCTNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNCTCTGACGGAGACGGAAAATTAGACAATTT
TAGTGCGGAAAAACGGAATTTAGCAAAATAATTTGCGGAATTTCGGAATT
AGTAAAAAATATTCAAAATTTGCGGAATTTTCGACAAAAATATTGAATTT
TGAAGGAATTTTCGGTGACGGAATTTTGGTTCAATTTAAGACGGTTTGAC
GGAAATTGGAGAAAAATTTGGCGGAATTGCGGAATTGGGTACCCCCTGAA
ACCCCGCCCCCCTATACAGTAATAAACAAGTATCAGCTCCTTAATCACCA
AATTACAAAACTACGGTTTCTTTCGTTTCCGAAAATGAGGCGAGAGATTT
AATTCAATTGACCTTATTTTGTTTCGGTAAATGGAACAAGAACCATATTA
ACCTTTTCTTTACTTTCGATCATAAGTTTTAAAATAAAATTCTTTGCTTC
TTAATTAAGGTTACCACGGAAACATCAGCTGGCATGGAGTTTGCCAGTAA
CGTTGAAGCAGATGTCCAAGCATCAGTGAATGGGATTGGTATCGACACCA
CAGTTCCTCCACTCGTCAAAAGCTCCTTCTCCGCAAGCAACAGTTTTAGA
GAAAGTGAAAAATTCTTCTCACAAAACAAAGGTGTTGTTACACTCAATGA
TGCAACTTGTACCTCCTATACGGCCGTCATCTCAGCATACAACCCGCCAC
CTTTCTCCGATAACTTTTTGAAAGCCCTTATTGTTCTTCATAGAACAAGT
TTCAAATCTGAAGCAGAAAAAGATCGGGAATTTTATCGTTTTATTGACAA
CTTTGGTACACATTTCCTGTCACATGCAACAATGGGTACACGGTTAGCAA
TCACACGAAAGTACACTTCGGACGAATATTCAAACTCAAAAGACGAAGCA
ATAAAGGACTGCAATGTTCAACAACTTTCAGTATTTTTCGGACAACAAGT
TGACAGCAAATTGGATCACTGCAAAGCTGTTGATAAATCATCAAGCTCAA
AGATCGAGAATATCTACGAGCGTGAATTCATCTCCAGCTATGGTAGTAAA
CCAGCTAAAGATCTAGTTGATTGGTCAACACAAGACTTCCCAAACCCCTT
ACCAGTCCGTATGACATTAAGACCGATCCTTAATCTCTTCGGTACAACCT
ACATGAAACATCCATCAGTGAAACGCCTTCGAATCCAACCAAAAAACATT
TTGAAATGGATTGCACCACGTTACTATAACTTTTGCAATAAATACAAAAA
CATCTTGGGCGTCAAAACCTGCAATGCTGAAGCAGTCAAAGGGTGTGGCT
GGAGTGATACATGCAACCGTAGGTCACAACACTGTATCAACGACAAGACA
GACCCTAATGGATACAGATGTTGTGATATCAAGCAGTGTGCTGACCAGCC
ATGCAAGTATGGAGCGTGTCACGTCTCAGGCAAATGCTCGTACGTCTGCA
AATGTAGATGGGGCTATACAGGCAAACATTGTGAGCACGAAATCCTAACA
GCATCCAGCCTGGAAATGGGTACTGATATTCTGATCGCAGCAAACCGGTA
CTTGTCACATGACCAAATGGCAAAGAACATTCAATTGTCTTTAGTAAAGC
ACTATGGAATCAAATTCACAGTTCTGGTATATGATGATGTTTACGGGTAT
GGATTACACAACGTCCAGGGGACGCAATTTTACAGCAATTTCAGAGAATG
GGGACACAATGTGGTTGTCGGCTACTCACAAAATGATTTAGAATCAACAC
CAGAACAAATGGCCATGATCAAATGGAGATTATTAGGAGCTGTCTTGAAT
CAAGGATGTCATTCATCAACTATCGTCGAAAAAGTGAAGGATTTGCTGCA
TAAGTATAATATACCTTACAGTATGATCTTTTCCACTCCATGGGGAAATA
AATTGCGTACATATTCGGATGTGGAATCTACATATTTCTTGAACTACGAC
TGTGGCGTTGGAAAGAAAGCCTCAATCGCTGTAATGCTAAGATGAATTTA
TTTTTTAATTTGTAAACTAATATAAGAGTACTCATGTATTGTGATAATGT
AATCATTTGCATAAAATAAAACATTCATACGAAATAGC

Coding sequence (CDS) from alignment at scaffold_58:572836..576973-

>TCONS_00070968 ID=TCONS_00070968|Name=TCONS_00070968|organism=Clytia hemisphaerica|type=CDS|length=1863bp|location=Sequence derived from alignment at scaffold_58:572836..576973- (Clytia hemisphaerica)
ATGGCCCTGGCAGTTGCTTATATCCTACTGTCCATGGCAGCAACCATTAA
CACCCAACAACCTAACGATGATTCGAACCCCAACCTCATGGCAGCCATGA
CAGGTTATAATATCTTAAAAGGAAACCCATTCTCAATGAACGCTTTACAT
GACCCAGGATTCTTGGCATCTTATATCTTCAACCCATACACCAGTAGTGG
CGGACCACCAGGAATGGGCGATGGTTCGAGGCAGTTACACCCGGGCGTTA
CAGTGAGAAACATTCGACAATGCGATTTGAGTTTGACCACTGATACAATC
ACCACCATGAAAGAATATCAACGACAGGTTACCACGGAAACATCAGCTGG
CATGGAGTTTGCCAGTAACGTTGAAGCAGATGTCCAAGCATCAGTGAATG
GGATTGGTATCGACACCACAGTTCCTCCACTCGTCAAAAGCTCCTTCTCC
GCAAGCAACAGTTTTAGAGAAAGTGAAAAATTCTTCTCACAAAACAAAGG
TGTTGTTACACTCAATGATGCAACTTGTACCTCCTATACGGCCGTCATCT
CAGCATACAACCCGCCACCTTTCTCCGATAACTTTTTGAAAGCCCTTATT
GTTCTTCATAGAACAAGTTTCAAATCTGAAGCAGAAAAAGATCGGGAATT
TTATCGTTTTATTGACAACTTTGGTACACATTTCCTGTCACATGCAACAA
TGGGTACACGGTTAGCAATCACACGAAAGTACACTTCGGACGAATATTCA
AACTCAAAAGACGAAGCAATAAAGGACTGCAATGTTCAACAACTTTCAGT
ATTTTTCGGACAACAAGTTGACAGCAAATTGGATCACTGCAAAGCTGTTG
ATAAATCATCAAGCTCAAAGATCGAGAATATCTACGAGCGTGAATTCATC
TCCAGCTATGGTAGTAAACCAGCTAAAGATCTAGTTGATTGGTCAACACA
AGACTTCCCAAACCCCTTACCAGTCCGTATGACATTAAGACCGATCCTTA
ATCTCTTCGGTACAACCTACATGAAACATCCATCAGTGAAACGCCTTCGA
ATCCAACCAAAAAACATTTTGAAATGGATTGCACCACGTTACTATAACTT
TTGCAATAAATACAAAAACATCTTGGGCGTCAAAACCTGCAATGCTGAAG
CAGTCAAAGGGTGTGGCTGGAGTGATACATGCAACCGTAGGTCACAACAC
TGTATCAACGACAAGACAGACCCTAATGGATACAGATGTTGTGATATCAA
GCAGTGTGCTGACCAGCCATGCAAGTATGGAGCGTGTCACGTCTCAGGCA
AATGCTCGTACGTCTGCAAATGTAGATGGGGCTATACAGGCAAACATTGT
GAGCACGAAATCCTAACAGCATCCAGCCTGGAAATGGGTACTGATATTCT
GATCGCAGCAAACCGGTACTTGTCACATGACCAAATGGCAAAGAACATTC
AATTGTCTTTAGTAAAGCACTATGGAATCAAATTCACAGTTCTGGTATAT
GATGATGTTTACGGGTATGGATTACACAACGTCCAGGGGACGCAATTTTA
CAGCAATTTCAGAGAATGGGGACACAATGTGGTTGTCGGCTACTCACAAA
ATGATTTAGAATCAACACCAGAACAAATGGCCATGATCAAATGGAGATTA
TTAGGAGCTGTCTTGAATCAAGGATGTCATTCATCAACTATCGTCGAAAA
AGTGAAGGATTTGCTGCATAAGTATAATATACCTTACAGTATGATCTTTT
CCACTCCATGGGGAAATAAATTGCGTACATATTCGGATGTGGAATCTACA
TATTTCTTGAACTACGACTGTGGCGTTGGAAAGAAAGCCTCAATCGCTGT
AATGCTAAGATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044108XLOC_044108Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070968-proteinTCONS_00070968-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070968-exon-scaffold_58-1575043694:576928..576973TCONS_00070968-exon-scaffold_58-1575043694:576928..576973Clytia hemisphaericaexon
TCONS_00070968-exon-scaffold_58-1575043694:575714..576050TCONS_00070968-exon-scaffold_58-1575043694:575714..576050Clytia hemisphaericaexon
TCONS_00070968-exon-scaffold_58-1575043694:572836..574464TCONS_00070968-exon-scaffold_58-1575043694:572836..574464Clytia hemisphaericaexon
TCONS_00070968-exon-scaffold_58-1510915933:576928..576973TCONS_00070968-exon-scaffold_58-1510915933:576928..576973Clytia hemisphaericaexon
TCONS_00070968-exon-scaffold_58-1510915933:575714..576050TCONS_00070968-exon-scaffold_58-1510915933:575714..576050Clytia hemisphaericaexon
TCONS_00070968-exon-scaffold_58-1510915933:572836..574464TCONS_00070968-exon-scaffold_58-1510915933:572836..574464Clytia hemisphaericaexon
TCONS_00070968-exon-scaffold_58-1491911889:576928..576973TCONS_00070968-exon-scaffold_58-1491911889:576928..576973Clytia hemisphaericaexon
TCONS_00070968-exon-scaffold_58-1491911889:575714..576050TCONS_00070968-exon-scaffold_58-1491911889:575714..576050Clytia hemisphaericaexon
TCONS_00070968-exon-scaffold_58-1491911889:572836..574464TCONS_00070968-exon-scaffold_58-1491911889:572836..574464Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:572836..576973 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0589889	0.0766828	0.022268	0.0217745	0	0	0.0252618	0.0473376	0.0497313	0	0	0	0.593121	2.06576	0.62547	1.67595	0.811866	0.650753	0	2.23302	0.00458948	0.894773	5.48441	9.08455	0.871806	23.7548	0.0539347	0	1.09127	0.888591
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR020864MACPF
IPR000742EGF-like_dom
IPR013032EGF-like_CS
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070968 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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