TCONS_00070973 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070973
Unique NameTCONS_00070973
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1393

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070973 ID=TCONS_00070973|Name=TCONS_00070973|organism=Clytia hemisphaerica|type=transcript|length=1393bp
GTGTATATTTGCTGACGGTTCATTtaaagagtttgaatttctaaCTTCCT
aattagaaaaatgaaagtcAAATTTAAAACTGAACTTTTTGCACGAGGGA
AAGGCAACTATGAAGTTGACACTTTGCATCATATTGACGCTTCTACCATT
TGTCGATGCGCATAAGAAGCGTATTTTGATATTCGGCGGTAACGGATTTC
TAGGAAGTCACTTGGTCAAAGGTTTAGCAGACTCTGGAGAAGATTATGAA
ATCACATTGGTCAATAGAGGAAATGCCTATTTCAATTCAGACAAAGATGC
CACGAGTTACGCTGATAAGATATTGATTTGCGACCGCGATACATTGCTTA
GATCGTCATGCCCAGGTTTGCTCGGGAAATCAAAATACGACGTAGTGATT
GACTTTAGTTCGTACAAAGATCAACAAATCGAACAAGTGATTGATATCTT
GAAGAACCGAGTTGGAATCTATATCATGATTAGTACGGACGCTGTGTACG
AAGTCAGCGAGAAGCACCACTCGGAACGGACTAGAGAGGAAGATTCGAAA
AATAAACCTGAGGATTTGAAGAAGAGAGAGGAACTGGTGAAGAATAATAA
GTATGGGGCAGCGAAGAAAGGTTGTGAAGAAAGATTAATGGTTCAACGGG
AACGACTCGGTTTTCCGTACGTTATCTTGCGGCTGGCTGATGCTATTGGA
GAACGAGATACTTCGTACCGCTGGTGGAATTATCAGCTCTGGATGAACCT
TCACCAACATTTCAACCATAAAGTTGCACTACCTAATGGAGTCAAAGATC
ACAAATTCAGCATGGTTTACGCTGGAGACGTTGCAAAAGCAATTATGAAA
ATCATTCACGAGCCTGAAGTTTTCCATGATAAAGTCATTAATTTAGCTTT
CAAAGAAGACATCACATTGACTAAGATTCTGGACTTCATGCAGAAATATT
ACAAGCTTGAGAAAGCTTCTTATGAGCACGAGGACGAGAAAGGATTTTTC
CGATACCCAACTGCCGAACGCGGTCCTATAGATGTTACAAATGCTGAGAT
TCTCCTAGATTGGGAGCCAACTCCTTTTGAAGAAGCTGCGAAAGCgactt
gtaaattttttgacGAGGCTATGGTGAATCCAATATATGCTAAAGAGCGT
GAGATCGCTTTAGCGGAATTCATCGAGGAAACACTACCTGAAAGTTTTGA
TGACGAAGATATGTTTATATATGTTTTGACTAAATTGTATTCATCAACGG
TATTTAATGGTATTGATATAGGACTTGGTGAGATTGACTCAGACAACCTT
TTGGCAGAATCCAGTAATGAAGATGAAGACGAAGAtataaaagatttgaa
agaagaactTGATGTCAAACGCATGCCGTGGCCAGACCGGTGT
Run BLAST on NCBI

protein sequence of TCONS_00070973-protein

>TCONS_00070973-protein ID=TCONS_00070973-protein|Name=TCONS_00070973-protein|organism=Clytia hemisphaerica|type=polypeptide|length=428bp
MKLTLCIILTLLPFVDAHKKRILIFGGNGFLGSHLVKGLADSGEDYEITL
VNRGNAYFNSDKDATSYADKILICDRDTLLRSSCPGLLGKSKYDVVIDFS
SYKDQQIEQVIDILKNRVGIYIMISTDAVYEVSEKHHSERTREEDSKNKP
EDLKKREELVKNNKYGAAKKGCEERLMVQRERLGFPYVILRLADAIGERD
TSYRWWNYQLWMNLHQHFNHKVALPNGVKDHKFSMVYAGDVAKAIMKIIH
EPEVFHDKVINLAFKEDITLTKILDFMQKYYKLEKASYEHEDEKGFFRYP
TAERGPIDVTNAEILLDWEPTPFEEAAKATCKFFDEAMVNPIYAKEREIA
LAEFIEETLPESFDDEDMFIYVLTKLYSSTVFNGIDIGLGEIDSDNLLAE
SSNEDEDEDIKDLKEELDVKRMPWPDRC
Run BLAST on NCBI

transcript from alignment at scaffold_58:594361..598161-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070973 ID=TCONS_00070973|Name=TCONS_00070973|organism=Clytia hemisphaerica|type=transcript|length=3801bp|location=Sequence derived from alignment at scaffold_58:594361..598161- (Clytia hemisphaerica)
GTGTATATTTGCTGACGGTTCATTTAAAGAGTTTGAATTTCTAACTTCCT
AATTAGAAAAATGAAAGTCAAATTTAAAACTGAACTTTTTGCACGAGGGA
AAGGCAACTATGAAGTTGACACTTTGCATCATATTGACGCTTCTACCATT
TGTCGATGCGCATAAGAAGCGTATTTTGATATTCGGCGGTAACGGATTTC
TAGGAAGTCACTTGGTCAAAGGTTTAGCAGACTCTGGAGAAGATTATGAA
ATCACATTGGTCAATAGAGGAAATGCCTATTTCAATTCAGACAAAGATGC
CACGAGTTACGCTGATAAGATATTGATTTGCGACCGCGATACATTGCTTA
GATCGTCATGCCCAGGTTTGCTCGGGAAATCAAAATACGACGTAGTGATT
GACTTTAGTTCGTACAAAGATCAACAAATCGAACAAGTGATTGATATCTT
GAAGAACCGAGTTGGAATCTATATCATGATTAGTACGGACGCTGTGTACG
AAGTCAGCGAGAAGCACCACTCGGAACGGACTAGAGAGGAAGATTCGAAA
AATAAACCTGAGGATTTGAAGAAGAGAGAGGAACTGGTGAAGAATAATAA
GTATGGGGCAGCGAAGAAAGGTTGTGAAGAAAGATTAATGGTTCAACGGG
AACGACTCGGTTTTCCGTACGTTATCTTGCGGCTGGCTGATGCTATTGGT
GAGTATATCGTCTGAGATTAAGAACCCTTTTCTCATTTAAATCAAATGGA
CAGCTGGTAATATAATACAGATATTACTAAGTTCTATAGTTAAGACTATT
CAGAAAAACAGTTACGGTCTCTAATGCGGTGTTCTACTATTTGATATGCT
CCGTTATTCGATAATATCGAAAGTCCCCGTCGACAAGAAGCTCTCATAAA
CGACTATTATTCAACACGCCCCCTTGTTATTCGATGAAAATCCGATTCCC
TTTGATTATTGAATTAGAGAACGTCAACTATATAATAACTTGTACGATGC
ATAAAGGGCTTGTACCAATAGCGAGCACCTCACCAAAAACCGGGATTTTT
CAATGTGTAAAAACGCGGGTGACGTCTAGTATAGGCTATTGCACCAATCT
TAATTACAATTGAGATCGTTACATATCTAAAATTATCTAACTTCAGGAGA
ACGAGATACTTCGTACCGCTGGTGGAATTATCAGCTCTGGATGAACCTTC
ACCAACATTTCAACCATAAAGTTGCACTACCTAATGGAGTCAAAGATCAC
AAATTCAGCATGGTTTACGCTGGAGACGTTGCAAAAGCAATTATGAAAAT
CATTCACGAGCCTGAAGTTTTCCATGATAAAGTCATTAATTTAGCTTTCA
AAGAAGACATCACATTGACTAAGATTCTGGACTTCATGCAGAAATATTAC
AAGCTTGAGAAAGCTTCTTATGAGCACGAGGACGAGAAAGGATTTTTCCG
ATACCCAACTGCCGAACGCGGTCCTATAGATGTTACAAATGCTGAGATTC
TCCTAGATTGGGAGCCAACTCCTTTTGAAGAAGCTGCGAAAGCGACTTGT
AAATTTTTTGACGAGGCTATGGTGAATCCAATATATGCTAAAGAGCGTGA
GATCGCTTTAGCGGAATTCATCGAGGAAACACTACCTGAAAGTTTTGATG
ACGAAGATATGTTTATATATGTTTTGACTAAATTGTATTCATCAACGGTA
TTTAATGGTATTGATATAGGACTTGGTGAGATTGACTCAGACAACCTTTT
GGCAGAATCCAGTAATGAAGATGAAGACGAAGATATAAAAGATTTGAAAG
AAGAACTGTAATTATTGAAAAAAAAGAATTAATATCTTCTACTCTTAGGT
TCCAAATAAACGCCCCCCCGCTTGTTAATTTTTCGAAAATTTTCCAACCC
CCCCGGACCTTATTAGGACCCCCCCGTTTATTAATCTCTAAGAATATTTT
CAGCTGTCAAAGAGAAGGCCCCGGCTACTTTGCTCTAAATAGCCTGATTT
TAGTCTATTTTTACCTTATTTTTGGGTTTCAGAAGTACAATTTCCAACCC
CCCCGGACCTTATTAGGACCCCCCCGTTTATTAATCTCTAAGAATATTTT
CAGCTGTCAAAGAGAAGGCCCCGGCTACTTTGCTCTAAATAGCCTGATTT
TAGTCTATTTTTACCTTATTTTTGGGTTTCAGAAGTACAATTTCCAACCC
CCCCGGCAATTAGGTCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCC
CGTTTATTCGAACCCCCCCCGTTTATTTGGAACCTAAGAGTACATAAAAG
TTTCATTGTATACATTTGTCTCTCTCTAATTCGATCTTCAAGGGACCAAG
GATTTTCTTCGAATTAGAAAAATATCTAAATTACAGAAAGGATCTTATAC
CAATCTCTAGCTGGGGGAAAAATATTTAAATTCGAATTATCGAAAGATTC
GAATTAGAGAGAGTTGGCTGCAAACACCCCTGTGTCACAGACCCGCTCTG
GAAAATTTGGCAAAAATCTCTTCCCCGGTGGGAAAAATACCCTAGATTTT
AAGCCCCACTGAGAGATTGACTTTGATTTCATCCCCATTCAAAATTCATT
GTTTAGAATTTGCACTCCAAAACCATGCCCACTGGATTTTTTAATTTTGC
AACAATAGAAATTTTATCCTCATTGAGATTTCAATCGAAATTCTTATCCC
CGCTGTAGGAAAGATTTTCACCGGGGCTGTGAGACAGGGGTGTTATAAAA
ATTGACCTTTACATAGCTTTTCACAGAGTTGCATACTTCTGATGTTATTA
CTTTGTATAAATATGTACGGGATTGCGATTCTGCAGTGAATGTTCTTAGA
TACCGCTAGCTATGTAGGGAAAATTTGCTAATCAGCTGGACTAGGTCTAC
CCAAATTTATAGTGCATAAATTATGTTAAATTTGAATATACATGACGTCA
AAAAATTGCCAGAGGTCAATAAAAAACATCTCAACCTTTTTTAACGACGA
TGTAATCAAAGTTATGTTATTAAAGAAAATCTCTTTCTGACATAATCGCT
GACTTTCTATAAGAGACCTGACGTCATCCTAAAGTTACAACGCGTCAACT
CATAATTTTAGGTTGATCTCGTGCAGAACGCATGCTTGCCTGGGTAGATG
AATGCAGCTAAAATTACCATACACGCACCGTCTAGAGACCTTTTTATAAG
AAAGTGTATTTTTGCTAACGAATAGCTCAGATATATTACTCAAAATAAAC
ATTTAGAAATTTAAACCTCAATACAAATAATGTTTTAGGACCTTACTAAA
TAGGCTAACTCTATAAGCCAGCTGATAAATGATGCTAAATTTAACTTTCT
AAACTGGTAGGTCCTTAAATGATTCAAATACAGTGCTTGCCCACAAAGTT
CTTATAAATCTAAACTGTCATTAACTTAATCTCGTGAATAGAAAATTAAG
CAGCTCATTATACAAGTAAGCAGGAAAAACTGTCAAAAGAAATTAATTAG
TCGCTTTTTTGTATTGTTAATATGCTAAGATAATTTGACTGCAATGAGAT
CATTGTTTCTTTTCCAGTGATGTCAAACGCATGCCGTGGCCAGACCGGTG
T

Coding sequence (CDS) from alignment at scaffold_58:594361..598161-

>TCONS_00070973 ID=TCONS_00070973|Name=TCONS_00070973|organism=Clytia hemisphaerica|type=CDS|length=1284bp|location=Sequence derived from alignment at scaffold_58:594361..598161- (Clytia hemisphaerica)
ATGAAGTTGACACTTTGCATCATATTGACGCTTCTACCATTTGTCGATGC
GCATAAGAAGCGTATTTTGATATTCGGCGGTAACGGATTTCTAGGAAGTC
ACTTGGTCAAAGGTTTAGCAGACTCTGGAGAAGATTATGAAATCACATTG
GTCAATAGAGGAAATGCCTATTTCAATTCAGACAAAGATGCCACGAGTTA
CGCTGATAAGATATTGATTTGCGACCGCGATACATTGCTTAGATCGTCAT
GCCCAGGTTTGCTCGGGAAATCAAAATACGACGTAGTGATTGACTTTAGT
TCGTACAAAGATCAACAAATCGAACAAGTGATTGATATCTTGAAGAACCG
AGTTGGAATCTATATCATGATTAGTACGGACGCTGTGTACGAAGTCAGCG
AGAAGCACCACTCGGAACGGACTAGAGAGGAAGATTCGAAAAATAAACCT
GAGGATTTGAAGAAGAGAGAGGAACTGGTGAAGAATAATAAGTATGGGGC
AGCGAAGAAAGGTTGTGAAGAAAGATTAATGGTTCAACGGGAACGACTCG
GTTTTCCGTACGTTATCTTGCGGCTGGCTGATGCTATTGGAGAACGAGAT
ACTTCGTACCGCTGGTGGAATTATCAGCTCTGGATGAACCTTCACCAACA
TTTCAACCATAAAGTTGCACTACCTAATGGAGTCAAAGATCACAAATTCA
GCATGGTTTACGCTGGAGACGTTGCAAAAGCAATTATGAAAATCATTCAC
GAGCCTGAAGTTTTCCATGATAAAGTCATTAATTTAGCTTTCAAAGAAGA
CATCACATTGACTAAGATTCTGGACTTCATGCAGAAATATTACAAGCTTG
AGAAAGCTTCTTATGAGCACGAGGACGAGAAAGGATTTTTCCGATACCCA
ACTGCCGAACGCGGTCCTATAGATGTTACAAATGCTGAGATTCTCCTAGA
TTGGGAGCCAACTCCTTTTGAAGAAGCTGCGAAAGCGACTTGTAAATTTT
TTGACGAGGCTATGGTGAATCCAATATATGCTAAAGAGCGTGAGATCGCT
TTAGCGGAATTCATCGAGGAAACACTACCTGAAAGTTTTGATGACGAAGA
TATGTTTATATATGTTTTGACTAAATTGTATTCATCAACGGTATTTAATG
GTATTGATATAGGACTTGGTGAGATTGACTCAGACAACCTTTTGGCAGAA
TCCAGTAATGAAGATGAAGACGAAGATATAAAAGATTTGAAAGAAGAACT
TGATGTCAAACGCATGCCGTGGCCAGACCGGTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044111XLOC_044111Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070973-proteinTCONS_00070973-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070973-exon-scaffold_58-1575043694:597464..598161TCONS_00070973-exon-scaffold_58-1575043694:597464..598161Clytia hemisphaericaexon
TCONS_00070973-exon-scaffold_58-1575043694:596355..597015TCONS_00070973-exon-scaffold_58-1575043694:596355..597015Clytia hemisphaericaexon
TCONS_00070973-exon-scaffold_58-1575043694:594361..594394TCONS_00070973-exon-scaffold_58-1575043694:594361..594394Clytia hemisphaericaexon
TCONS_00070973-exon-scaffold_58-1510915933:597464..598161TCONS_00070973-exon-scaffold_58-1510915933:597464..598161Clytia hemisphaericaexon
TCONS_00070973-exon-scaffold_58-1510915933:596355..597015TCONS_00070973-exon-scaffold_58-1510915933:596355..597015Clytia hemisphaericaexon
TCONS_00070973-exon-scaffold_58-1510915933:594361..594394TCONS_00070973-exon-scaffold_58-1510915933:594361..594394Clytia hemisphaericaexon
TCONS_00070973-exon-scaffold_58-1491911889:597464..598161TCONS_00070973-exon-scaffold_58-1491911889:597464..598161Clytia hemisphaericaexon
TCONS_00070973-exon-scaffold_58-1491911889:596355..597015TCONS_00070973-exon-scaffold_58-1491911889:596355..597015Clytia hemisphaericaexon
TCONS_00070973-exon-scaffold_58-1491911889:594361..594394TCONS_00070973-exon-scaffold_58-1491911889:594361..594394Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:594361..598161 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	1.76205	0.293352	0	0.126845	0.18441	0.415104	3.46793	2.25225	0	0	0	0	0.249785	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001509Epimerase_deHydtase
IPR016040NAD(P)-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0050662coenzyme binding
GO:0003824catalytic activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003824 catalytic activity
molecular_function GO:0050662 coenzyme binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070973 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top