TCONS_00071004 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071004
Unique NameTCONS_00071004
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1719

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071004 ID=TCONS_00071004|Name=TCONS_00071004|organism=Clytia hemisphaerica|type=transcript|length=1719bp
atttttgtttgtattttttttttaggaatataaaaacaaatgattcactc
aaaaactttttctcaaacACGTTGGATGAATTTagatgttttcaatgaaa
aatgagTAGATGGAGAAGTACGTGTCCCGACAAATTACTGACCAGTATTG
CAAATATCTCAGAAGCTCGTTTGTACTTGTTGCGACAAACTGGTCCCACT
GGATTCCTTTTGAAAGAGCATGATGGAGAGACGAAGTTCAAGgttttgct
TGGCGCTGTTCACTCGTGCGAttgtaatttctttttgaaagagAGGGAGC
TTTGTAAACACATCCTATGgaTTTTAATCAGAAAATTTCGGATCCAAAAA
GAAGATCCAATCGCGTTCCAGCTTGGTCTTTGTGAACGTGAGCTAAACCA
TGTTCTGTATGGTCAGAAGCAAGTTGAGAATAAACAACCAACCAAAGCAG
CATCTGCTGGTGCCAGAGAAATGTTGAAACAGAAGAAGATCGAGAAAGAA
GATGTCTGCCCCATCTGTCAAGATGAAATATACAAAACGAAAAAGAGTTT
AACTTACTGCAAgtttGGATGTGGAAACAGTGTTCACGTTTCCTGTCTCA
AGATTTGGGCTGACCATCAGCATAAATCAAACAACGAAGAAGTTATCAAG
TGCCCGCTCTGTCGAACCGAATTCGCTAGCTATAAAAGTATATTGCAAGA
ACATCGTCGCTCTGTCACTCGATCTCAGATGAGAAAAAATTCCCTGCTCA
GTATTTGTGTTGGATGTAAACAAAGAGCTCCTTCTACATCTTCTACTCAA
TCTGTTTACAAATGCAACACATGCAATTCGTTTCTTTGTCAATCCTGTTT
CCATCCAAATAAACATTATGGACACcaagtgaaaacaaaacatGGAGGAG
GAGAGAAGTGGGAAGACTTGGGTTATAAAGAAGTTAATCTCTGTATTGGA
GGTTTCTCCTCTTCCATGACGTCATCACATGGCAAACAATTTCCAAGCTC
ACCTTCAGCACCAGTGAGGCCGAAACAAAAATTATCAAGACTTCGAAGTT
CATCCCAAACTGACGTCCGTGATTTAGCCATCAGCGGACTCAGTCTAAAC
TCTGAAAAATTGGAACTAAACTATAAACCTGTTAGCGAACAAAGATCTTC
AAACGCTTCTACTGCAAGATTTCGATTACCACCGATCGGGAAAACGAGAG
GTTTAATCGGAATGTCGGGGAAACATCGGAGTAAAAGTGGGACCGGGAAT
CAAACAGAAGAACGGAAGGAAGTGGATTTCACCTTATACTCATCACCTCT
CAACTCAAGGACGGAAAATCTGCGTTGAGAGAATTTTTAGAATGATCAGA
GGTGGAGTGGATATCATTTTTTGAGAGAAGTTCTGAATCTTCATTCGAAT
ACCGATAGATCCCATCGAAGAGCTTTGGTTGAACATTATACAGTGCATTG
TATCGCAATGAAGTTTTTTCTTGGAAAGAATTAAaccaaatatcttttta
gaagttataattattttttaaaaccAAATGTACATATATTGAAtacgaaa
tttattttttacattattTAAGTTTATATATAAACAATTTCGTGTGTGCG
TCAATGAAAAGATAGTAAATAAATCATTAATATATCGTTTTCTTCCCCAA
ATATCTCCTCCAGTTATTGACGAATTATTTTGACTGCAGGGGGTGGTGTA
GCGTGGGCTTCGATCTCCt
Run BLAST on NCBI

protein sequence of TCONS_00071004-protein

>TCONS_00071004-protein ID=TCONS_00071004-protein|Name=TCONS_00071004-protein|organism=Clytia hemisphaerica|type=polypeptide|length=408bp
MSRWRSTCPDKLLTSIANISEARLYLLRQTGPTGFLLKEHDGETKFKVLL
GAVHSCDCNFFLKERELCKHILWILIRKFRIQKEDPIAFQLGLCERELNH
VLYGQKQVENKQPTKAASAGAREMLKQKKIEKEDVCPICQDEIYKTKKSL
TYCKFGCGNSVHVSCLKIWADHQHKSNNEEVIKCPLCRTEFASYKSILQE
HRRSVTRSQMRKNSLLSICVGCKQRAPSTSSTQSVYKCNTCNSFLCQSCF
HPNKHYGHQVKTKHGGGEKWEDLGYKEVNLCIGGFSSSMTSSHGKQFPSS
PSAPVRPKQKLSRLRSSSQTDVRDLAISGLSLNSEKLELNYKPVSEQRSS
NASTARFRLPPIGKTRGLIGMSGKHRSKSGTGNQTEERKEVDFTLYSSPL
NSRTENLR
Run BLAST on NCBI

transcript from alignment at scaffold_58:943423..951501-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071004 ID=TCONS_00071004|Name=TCONS_00071004|organism=Clytia hemisphaerica|type=transcript|length=8079bp|location=Sequence derived from alignment at scaffold_58:943423..951501- (Clytia hemisphaerica)
ATTTTTGTTTGTATTTTTTTTTTAGGAATATAAAAACAAATGATTCACTC
AAAAACTTTTTCTCAAACACGTTGGATGAATTTAGATGTTTTCAATGAAA
AATGAGTAGATGGAGAAGTACGTGTCCCGACAAATTACTGACCAGTATTG
CAAATATCTCAGAAGCTCGTTTGTACTTGTTGCGACAAACTGGTCCCACT
GGATTCCTTTTGAAAGAGCATGATGGAGAGACGAAGTTCAAGGTCTGGAC
ATTTCCTACATTTTCTGGATCAACTAGAAATTTGCAAAGAATACTGCAGA
TTAAGAAATGCTTTCTGACAGTTAATTAGATGTTCTGTTTTTTTGTTTTT
AGGTTTTGCTTGGCGCTGTTCACTCGTGCGATTGTAATTTCTTTTTGAAA
GAGAGGGAGCTTTGTAAACACATCCTATGGTATGTGTTCTTTAACATCAT
TTATGTCTCATTTCTGCGTCACCAAACATAATTATCAACAAGAAAATATT
GAACAGATTTGACTCGGGGTGTTCCGGTCGTTTAGTTGTGAAGTGAGATG
GAATTTAATTTAGTTCCCGCTTCTATGCTGACTTCAAACTTTGTTTTTGT
TTTTCAGGATTTTAATCAGAAAATTTCGGATCCAAAAAGAAGATCCAAGT
ATGTAGTCTATCAGATCATTTAATATTTCCTCAGTTAGCACTAAAGTCTT
TACACAGTTGAATGAAACAAATTGAAAGATCTTTAAACAAAGATTTCCCN
GGCCCCCCCCCCCTGATTAGACTGTTTATTGTTTTCCTTGAATATTTTTA
AACTCCTGCAACCCAGGAAGAAAGAAAAGCGGTCAAACTATCCAAACCCT
TTTGAAAAAGATTTGATTTTTATTAGTCGCGTTCCAGCTTGGTCTTTGTG
AACGTGAGCTAAACCATGTTCTGTATGGTCAGAAGCAAGTTGAGAATAAA
CAACCAACCAAAGCAGCATCTGCTGGTGCCAGAGAAATGTTGAAACAGAA
GAAGATCGAGAAAGAAGATGTCTGCCCCATCTGTCAAGATGAAATATACA
AAACGAAAAAGAGTTTAACTTACTGCAAGTATGTAAATTGTTTGTTTGAT
CTCAGAAGGCAGGCACAAAGCAGGCGGCCACCTGACCACATGATTTCAAA
ATAAAGTCAGATCCTGCTTAAATAACCTTTAAAAACAGACCTGTTTTAGG
GCTAAAATTCAAAAAAGTGCCTCCTTAGTCAATGTACAATTGTCACTTTC
AAAGTAGAGCGGCGGTCCCTGGAAAGCATTTAAGACACACAGAATTCTAT
TCAAAGATATTTACATTTTGCAAGCTTTTGAAAGGAATCTTTCCAGATAA
ACGTTTAGGAATTTTATTTTTTAGGTTTGGATGTGGAAACAGTGTTCACG
TTTCCTGTCTCAAGATTTGGGCTGACCATCAGCATAAATCAAACAACGAA
GAAGTTATCAAGTGCCCGCTCTGTCGAACCGAATTCGCTAGCTATAAAGT
ATGACAGTGACCTCGTTTATTTCAAACTTTCGTTTAATCAAATCCCTTGG
TGCAAAAATTTCCCGTTTCGAATGTTTACCTTTTCTTTCATTATTTGTAG
AGTATATTGCAAGAACATCGTCGCTCTGTCACTCGATCTCAGATGAGAAA
AAATTCCCTGCTCAGTATTTGTGTTGGATGTAAACAAAGAGCTCCTTCTA
CATCTTCTACTCAATCTGTTTACAAGTGAGTTATCCTATGTTCACATCAG
AAGGCGTGGATATTTCAACCTAAATGTGCTATTTTTTCAAATTTGAATTT
TGAATGAAAACATCTTTCAATAGTACGCCTCTTGAATTCTGTGGAATTTA
TCTTATATTTTTCTTTTTGAACCTTTTTTTTGATTAGCTACCCTCATTTT
ATTCTATGAAGTTCGAACATTTATCTTTAAGACAAAAGTCAACTTTAAAC
CATTTGAGTCTGCTCAATCACGTACCTCGAGTGCCTCAAGTGCCCTAGTG
CCTTAAAATTTCACGTNATTGTCTGTAATCAGGGTCACTGTGGGCAAATC
AGGGGGTAAATACACCACTTCTTGGTAGTTGTTGCCTGAATTTGGATGTT
TTTATTGTATGGTAGCCTCATATTTATGAAATTTTGAGATGGAAACCAGT
TATATACCCTTCAGTCATTTCTTAGTACTTTTGTTGACAACCTACACAAA
GTAATGACGGATTTAACTTAAATTATGGCCAAATTATAACATTTTTTGAT
ATAAGAGTGCTGTGTCATTGTTAAGGCCTGCTTTGATGAAAGATTTTCTA
ATCGTTTTGTGAAAACAAAACTAACGGTCCCAGGGGGGGGGCACGCAGTT
ACTACAAGACAGTATGACACTTACTACCGTGGTGGTACTGTATTCAGAAG
TTACAAATTGTAGTAACTGCTGTTTGGGGGTGGTGCCAAACACTAAAACT
AGCACTTTTGATGTAGTAAGTGCTTATATTTTAATTCTTTTTAAAGAAAT
TTCAAAATTTTTCACAAAAAATTTTTTTGTGAAAAAATTATTTGTTAAAA
AAATTCTTTTTGTTATAAATGGACGAAAAGAAATTTGNCCGTTGGCGCCA
AACAAGGAAGCGCCTCCTTAGTCAGTGTACAATTTTCACTTTCAAAGTAG
AGCGGCGGTCCCTGGAAAGCATTTAAGACACACAGAATTCTATTTAAAGA
TATTTACATTTTGCAAGCTTTTGAAAGGAATTTTTCCAGATAAACGTTTA
GGAATTTTCTTTTTTAGGTTTGGATGTGGAAACAGTGTTCACGTTTCCTG
TATCAAGATTTGGGCTGACCATCAGCATAAATCAAACAACGAAGAAGTTA
TCAAGTGCCCGCTCTGTCGAACCGAATTCGCTAGCTATAAAGTATGATAG
TGACCTCGTTTATTTTAAACTTTCGATCAAATCAAATCCCTTGGTGCAAA
AATTTCCCGTTTCGAATGTTTACCTTCTCTTTCATTTGTAGAGTATATTG
CAAGAACATCGTCGCTCTGTCACTCGATCTCAGATGAGAAAAAATTCCCT
GCTCAGTATTTGTGTTGGATGTAAACAAAGAGCTCCTTCTACATCTTCTA
CTCAATCTGTTTACAAGTGAGTTATCTTATGTTCACATCAGAAGGCGTGG
ATATTTCAACCTAAATTTGCTATTTTTTCAAATTTGAATTTTGAAGGGAA
AACATCTTTTAATAGTACGCCTCTTAAATTCTGTGGAATTTTTCTTTTTA
AATTTTTCATTTTAAATCTCTCATTTTATTCTATGAAGTTTGAACATTTA
TCTGATTAAGACAAAAGTCAACTTAAAACCATTTGAGTCTACTAAATCAC
GTACCTCACGTGCCCTAGTGCCTTAACTTTTTTACGTGCCTCTAGTGTCC
TAGTGCCTCGCGCGCATTTAGTGCCCTAGTGTCCTAGTGCTTTAAAATTT
CACATGTCCTAGTGCCCTAAAATTTTTACGTGCCCTAAAATTTTCACGTG
TCCTAAAATTTTCACTTGCCCTAAATTTTTCTTTTGCCCCAATTTTTTTT
AGCGATATGAGGTCTTTCTTATCGGTATTTCGGGATTAAGTCGATAAGTA
CTCGTGTATCGGTAATTGACAGCTTTTTTAGTGTCTCACGTGCCTCAAGT
GCCCTAGTGCCTTAAAATTTACCGTGCCCTAGTGCCCTAATTTTTTCGAC
TAATAACCTCAACCTTTGGATAATTTTCATTAAACTTATGTTGCCTTTCT
AAACACAGAAATTAGCTAATTAAAATATCGTTAAAGCTTTGTTTCAAATT
TTTAATTACTAACAGCCGAAATATCTGACCTCTTATTATTATTATTCTGA
ATATTTTTGTTCGACGACCTCGAATCATTTAAATGTATAATTATATCGCC
GTTGTGGAAAACAATTCTGAAAGAAAAACTAGCTGCTACGACAACGATCT
CGGTATGAACTCAAATGTTTCCACGTAGCCGTTGCAGTTGCAGTTGCAGT
TGTGACTTCGGAAACTCCGGAAGGTCCGGGAGTTGGAAAAAAATCGAAAA
ATTAATAAACGCCCTTACCCCCTCCCGTTTATTCGGCACCTGCGAGCAAA
GAGAAAGAAAGTGAGAGAAAAAGTGTCAGTGAATACTGTTGACAAGTACT
CGCTTGTGACAAGATAATTGCCCCTTGTTTCGACTGCAATTTTTACAGCT
ATAAGAACCGCTGACCACCACGTGCGCTGAGCGCCGAAAGCACGGTTATG
TATAAAAAGTTTAAATTCAAATGACGTAAATTCTCTACTTTTAAAATATT
TTAGCAATCAGAACTCAGCTAAAAAAATAATATTTTCGAATAATGCAGAA
CGTTACATCTGCGTGAAACTACTACAATTCGGATGCATTCCTAAAAAGAC
GCTACAAAATATGCTACTGATCAAACGTTTTTCATAAGTCTATCGAAAAT
ACAACAATTGTTTTTAACAAAACTAAAGTATGTTCACGATAAGTGTGCAC
TCTCTTTTTTTTTGTCTATAACCTTTTAAGGATTGCTTCAGTCGTAATAA
ATTTTGTACCGTTGGAAAGATATTAATGAGTGGAATAATTTGAATTAAAA
ATTGTTTTGAAAAATTTCAAAAATAAAGATGAAAAAAAGAAGAAAAAAAT
TAACTTCCTGTAGAATTGAGTTATAATTTTCCTTTTTACAGGAATGAAAC
TCCAATCTTAGAGCATCATCACTATGAAAATTTTTTTCATATTTTTATAA
ATATTCATTCAATGAAAATATATCAAATAAAGTTTGCCTCTACTTGACCC
AAAAAAAGAGAATAAAACAGGCTTTTTAGGGGTCAATCAGCTATAAACAT
TGTTTGATATCTTTTGACTGAAAGAATATTTTTGAAAAATTTGTTCACAG
TGATGACGCTCTAAGATTGGAGTTTCATTCCTGTGAAAATGAAAATTACA
ACTCAATTCTACAAGAAGTTTATTTTTTTCTTCTTCATTTTCACGTGAAA
AACAATAGGCCACGTGAAAATTTAAGGGCACATGAAAAAGGGGTAAACCA
GTCCCAAAAAGTTGTGCGAGACTTTTTTGATTTTTCTGTGATTTTTTTGT
GATTCTTGCCAATTTTCACGTGATTTGGATTTTGGATTTTTTTCAAGTAA
ATGTGAAAAATTTAGAGCACGTGAAAACAAATTGGGTACGTAGAAAAAAA
TAGGGCACGTGAAAAAATAAGGCGCGTGAAAAAATAAGGCGCGTGAAAAA
ATAGGACACGTGAAAAATCCAGGGCACTTAAGGCACGCGAGGCACTAGGG
CAATTGAGGCACTAGGGTACCAGAGGCACGTAAAAAAAGTTAAGGCACGT
GAGGCACGTGATTTAGCAGATTCAAACTATTTTAACCGCGCCAAGGATTG
TGAGCTTTATTTCGCATAACTTATTTCAGATGCAACACATGCAATTCGTT
TCTTTGTCAATCCTGTTTCCATCCAAATAAACATTATGGACACCAAGTGA
AAACAAAACATGTAAGAACAACATTCATTCATTTCTAAGTTCATACTATC
CAATATAACTGCCAAATTTATTTCCGCTGATACTTATAAGTTCACCATAT
AATACAATAGATGATTTATTCTTGAAGTTAAACTCCTCCATTCAAGCCCT
TCTCGTAAAACTGTCAGATATGACAATTTTCACCACATTTGCATTCCAGC
ATCCCACTAATCCCTCCTGTAAACAATGGCTTTCACTTTCACTTTAGGGA
GGAGGAGAGAAGTGGGAAGACTTGGGTTATAAAGAAGTTAATCTCTGTAT
TGGAGGTTTCTCCTCTTCCATGACGTCATCACATGGCAAACAGTAAGTTG
GTATTGATAGTTCTATCTAACTCTGTTTTAAACGATTTACAAGCCTTTGA
CCAATGAGGAAAAACGAATGTTTGCTTTTTAAAGACAAGTCGTGAAATTT
GATTTTGTTTGCCAAAAGATTATAAAATTTTCGTTGTGACAAAATTTTGA
TGTCTTGACGAATTGTAATTTGCTTTGTCATGATCTTTCGTTCAACTTCA
TCAATACACTGCAAGATCATGGTTTCATGAATCGATACACTGCAGAATCA
CTTACCCCATACTTATTTTATTTTTCTGTTATGAAAATCTTAATCCCAAT
TTACCAAAGTCATTTTAAAAGGTAAGATATTTCTGAGAACGCAAAAATAT
CGATCATCCTTTTTACCCTCGAGATTACTACACTTTTCAACTTCCACTCT
ACAGATTTCCAAGCTCACCTTCAGCACCAGTGAGGCCGAAACAAAAATTA
TCAAGACTTCGAAGTTCATCCCAAACTGACGTCCGTGATTTAGCCATCAG
CGGACTCAGTCTAAACTCTGAAAAATTGGAACTAAACTATAAACCTGTTA
GCGAACAAAGGTTTGTTTCTTTGGAAATATTATTTTTATCTTGGAAATAT
TGTAATGTACCTTATCGGGGAAAACTTCGTCGGGGAAAAGTGACGAACTT
TTGGACAAGTGACGAATATTTTCCCCGACGAAAATTTTCCCAGGCTTTAA
TGCGATTACCAACTACCAGCAAGTGATGAATTTTTCCCCGACGCAAATTT
TCCCCGACGAAGTTTTCCCCGATTAGGTAACCTAAATTGTTTAAATTGTC
AATCCAACTAAAACCTGAACACTGTAGTTTTCCCTTCTAGTATAGAATTT
CAAATCAACTTACACGCGATCAAACTCTACATTTCCTTCTTCTTAGATCT
TCAAACGCTTCTACTGCAAGATTTCGATTACCACCGATCGGGAAAACGAG
AGGTTTAATCGGAATGTCGGGGAAACATCGGAGTAAAAGTGGGACCGGGA
ATCAAACAGAAGAACGGAAGGAAGTGGATGTAAGAAAATGAGATATTCTT
TTTCCCCATTGTTTGAAAGTGACTGACGTTTCTCCTATGCTTCGAAGAAA
AATTGTATCAATTTAGAAACCCTAGAGCATGTAATTTCTAGTAGTGTGGT
GATCCGAGTTCGATTCCCTCTTTAGTTTTAAGCTTCACTTGGTAGGTCAA
TGAAGTGTAGGTCAANTGTGGTGATCCGAGTTCGTTTCCCTCTTTAGTTT
TAAGCTTCACTTGGTAGGTCAATGAAGCTTAGGTGGGTTGCCATACCATA
TGATGGAAATTTGGTACCACTACTCACCTTATACATTTTGGTGTATATGG
CATTCATCTTATTCTACGCTCGCAACGGGCTATATGCTCTCCCGCGTTTC
GAGTGTCATCACTATGCATCATATAGTATCTGTGTCTCGCGTGCACAGAA
CCAGCGGTGTCTGGATGGCGCTATGAATTCCAACTTCAAAAAGGAGGAAT
TCCTACTTCGAAATGAGTAGGACCCGTTCTCCATCGGCATCGGGGAGGGC
TAATATGTATATTTGAAGAAATTCATAGAATTTCTATCCAAATATCTTCT
TTCAGGAGATTGAATGGCAGAGCAGCATATGCATTTCGCCCTTTTATTGG
GACTCATTAGCACTGCATACTGCATCCTGGCTAGGCAGATCGAATTTATG
CTAGGAAATTCGATAAAACTAATTGTGTCGCACACTGAAAGATATATATT
TTACAGAAATGTTCTTAACCATCTTGTCTTTTTTCAGTTCACCTTATACT
CATCACCTCTCAACTCAAGGACGGAAAATCTGCGTTGAGAGAATTTTTAG
AATGATCAGAGGTGGAGTGGATATCATTTTTTGAGAGAAGTTCTGAATCT
TCATTCGAATACCGATAGATCCCATCGAAGAGCTTTGGTTGAACATTATA
CAGTGCATTGTATCGCAATGAAGTTTTTTCTTGGAAAGAATTAAACCAAA
TATCTTTTTAGAAGTTATAATTATTTTTTAAAACCAAATGTACATATATT
GAATACGAAATTTATTTTTTACATTATTTAAGTTTATATATAAACAATTT
CGTGTGTGCGTCAATGAAAAGATAGTAAATAAATCATTAATATATCGTTT
TCTTCCCCAAATATCTCCTCCAGTTATTGACGAATTATTTTGACTGCAGG
GGGTGGTGTAGCGTGGGCTTCGATCTCCT

Coding sequence (CDS) from alignment at scaffold_58:943423..951501-

>TCONS_00071004 ID=TCONS_00071004|Name=TCONS_00071004|organism=Clytia hemisphaerica|type=CDS|length=1227bp|location=Sequence derived from alignment at scaffold_58:943423..951501- (Clytia hemisphaerica)
ATGAGTAGATGGAGAAGTACGTGTCCCGACAAATTACTGACCAGTATTGC
AAATATCTCAGAAGCTCGTTTGTACTTGTTGCGACAAACTGGTCCCACTG
GATTCCTTTTGAAAGAGCATGATGGAGAGACGAAGTTCAAGGTTTTGCTT
GGCGCTGTTCACTCGTGCGATTGTAATTTCTTTTTGAAAGAGAGGGAGCT
TTGTAAACACATCCTATGGATTTTAATCAGAAAATTTCGGATCCAAAAAG
AAGATCCAATCGCGTTCCAGCTTGGTCTTTGTGAACGTGAGCTAAACCAT
GTTCTGTATGGTCAGAAGCAAGTTGAGAATAAACAACCAACCAAAGCAGC
ATCTGCTGGTGCCAGAGAAATGTTGAAACAGAAGAAGATCGAGAAAGAAG
ATGTCTGCCCCATCTGTCAAGATGAAATATACAAAACGAAAAAGAGTTTA
ACTTACTGCAAGTTTGGATGTGGAAACAGTGTTCACGTTTCCTGTCTCAA
GATTTGGGCTGACCATCAGCATAAATCAAACAACGAAGAAGTTATCAAGT
GCCCGCTCTGTCGAACCGAATTCGCTAGCTATAAAAGTATATTGCAAGAA
CATCGTCGCTCTGTCACTCGATCTCAGATGAGAAAAAATTCCCTGCTCAG
TATTTGTGTTGGATGTAAACAAAGAGCTCCTTCTACATCTTCTACTCAAT
CTGTTTACAAATGCAACACATGCAATTCGTTTCTTTGTCAATCCTGTTTC
CATCCAAATAAACATTATGGACACCAAGTGAAAACAAAACATGGAGGAGG
AGAGAAGTGGGAAGACTTGGGTTATAAAGAAGTTAATCTCTGTATTGGAG
GTTTCTCCTCTTCCATGACGTCATCACATGGCAAACAATTTCCAAGCTCA
CCTTCAGCACCAGTGAGGCCGAAACAAAAATTATCAAGACTTCGAAGTTC
ATCCCAAACTGACGTCCGTGATTTAGCCATCAGCGGACTCAGTCTAAACT
CTGAAAAATTGGAACTAAACTATAAACCTGTTAGCGAACAAAGATCTTCA
AACGCTTCTACTGCAAGATTTCGATTACCACCGATCGGGAAAACGAGAGG
TTTAATCGGAATGTCGGGGAAACATCGGAGTAAAAGTGGGACCGGGAATC
AAACAGAAGAACGGAAGGAAGTGGATTTCACCTTATACTCATCACCTCTC
AACTCAAGGACGGAAAATCTGCGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044125XLOC_044125Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071004-proteinTCONS_00071004-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071004-exon-scaffold_58-1575043694:951260..951501TCONS_00071004-exon-scaffold_58-1575043694:951260..951501Clytia hemisphaericaexon
TCONS_00071004-exon-scaffold_58-1575043694:951073..951149TCONS_00071004-exon-scaffold_58-1575043694:951073..951149Clytia hemisphaericaexon
TCONS_00071004-exon-scaffold_58-1575043694:950854..950894TCONS_00071004-exon-scaffold_58-1575043694:950854..950894Clytia hemisphaericaexon
TCONS_00071004-exon-scaffold_58-1575043694:950424..950625TCONS_00071004-exon-scaffold_58-1575043694:950424..950625Clytia hemisphaericaexon
TCONS_00071004-exon-scaffold_58-1575043694:950004..950127TCONS_00071004-exon-scaffold_58-1575043694:950004..950127Clytia hemisphaericaexon
TCONS_00071004-exon-scaffold_58-1575043694:949777..949901TCONS_00071004-exon-scaffold_58-1575043694:949777..949901Clytia hemisphaericaexon
TCONS_00071004-exon-scaffold_58-1575043694:945991..946072TCONS_00071004-exon-scaffold_58-1575043694:945991..946072Clytia hemisphaericaexon
TCONS_00071004-exon-scaffold_58-1575043694:945660..945754TCONS_00071004-exon-scaffold_58-1575043694:945660..945754Clytia hemisphaericaexon
TCONS_00071004-exon-scaffold_58-1575043694:945092..945247TCONS_00071004-exon-scaffold_58-1575043694:945092..945247Clytia hemisphaericaexon
TCONS_00071004-exon-scaffold_58-1575043694:944623..944755TCONS_00071004-exon-scaffold_58-1575043694:944623..944755Clytia hemisphaericaexon
TCONS_00071004-exon-scaffold_58-1575043694:943423..943864TCONS_00071004-exon-scaffold_58-1575043694:943423..943864Clytia hemisphaericaexon
TCONS_00071004-exon-scaffold_58-1510915933:951260..951501TCONS_00071004-exon-scaffold_58-1510915933:951260..951501Clytia hemisphaericaexon
TCONS_00071004-exon-scaffold_58-1510915933:951073..951149TCONS_00071004-exon-scaffold_58-1510915933:951073..951149Clytia hemisphaericaexon
TCONS_00071004-exon-scaffold_58-1510915933:950854..950894TCONS_00071004-exon-scaffold_58-1510915933:950854..950894Clytia hemisphaericaexon
TCONS_00071004-exon-scaffold_58-1510915933:950424..950625TCONS_00071004-exon-scaffold_58-1510915933:950424..950625Clytia hemisphaericaexon
TCONS_00071004-exon-scaffold_58-1510915933:950004..950127TCONS_00071004-exon-scaffold_58-1510915933:950004..950127Clytia hemisphaericaexon
TCONS_00071004-exon-scaffold_58-1510915933:949777..949901TCONS_00071004-exon-scaffold_58-1510915933:949777..949901Clytia hemisphaericaexon
TCONS_00071004-exon-scaffold_58-1510915933:945991..946072TCONS_00071004-exon-scaffold_58-1510915933:945991..946072Clytia hemisphaericaexon
TCONS_00071004-exon-scaffold_58-1510915933:945660..945754TCONS_00071004-exon-scaffold_58-1510915933:945660..945754Clytia hemisphaericaexon
TCONS_00071004-exon-scaffold_58-1510915933:945092..945247TCONS_00071004-exon-scaffold_58-1510915933:945092..945247Clytia hemisphaericaexon
TCONS_00071004-exon-scaffold_58-1510915933:944623..944755TCONS_00071004-exon-scaffold_58-1510915933:944623..944755Clytia hemisphaericaexon
TCONS_00071004-exon-scaffold_58-1510915933:943423..943864TCONS_00071004-exon-scaffold_58-1510915933:943423..943864Clytia hemisphaericaexon
TCONS_00071004-exon-scaffold_58-1491911889:951260..951501TCONS_00071004-exon-scaffold_58-1491911889:951260..951501Clytia hemisphaericaexon
TCONS_00071004-exon-scaffold_58-1491911889:951073..951149TCONS_00071004-exon-scaffold_58-1491911889:951073..951149Clytia hemisphaericaexon
TCONS_00071004-exon-scaffold_58-1491911889:950854..950894TCONS_00071004-exon-scaffold_58-1491911889:950854..950894Clytia hemisphaericaexon
TCONS_00071004-exon-scaffold_58-1491911889:950424..950625TCONS_00071004-exon-scaffold_58-1491911889:950424..950625Clytia hemisphaericaexon
TCONS_00071004-exon-scaffold_58-1491911889:950004..950127TCONS_00071004-exon-scaffold_58-1491911889:950004..950127Clytia hemisphaericaexon
TCONS_00071004-exon-scaffold_58-1491911889:949777..949901TCONS_00071004-exon-scaffold_58-1491911889:949777..949901Clytia hemisphaericaexon
TCONS_00071004-exon-scaffold_58-1491911889:945991..946072TCONS_00071004-exon-scaffold_58-1491911889:945991..946072Clytia hemisphaericaexon
TCONS_00071004-exon-scaffold_58-1491911889:945660..945754TCONS_00071004-exon-scaffold_58-1491911889:945660..945754Clytia hemisphaericaexon
TCONS_00071004-exon-scaffold_58-1491911889:945092..945247TCONS_00071004-exon-scaffold_58-1491911889:945092..945247Clytia hemisphaericaexon
TCONS_00071004-exon-scaffold_58-1491911889:944623..944755TCONS_00071004-exon-scaffold_58-1491911889:944623..944755Clytia hemisphaericaexon
TCONS_00071004-exon-scaffold_58-1491911889:943423..943864TCONS_00071004-exon-scaffold_58-1491911889:943423..943864Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:943423..951501 -
Expression
No biomaterial libraries express this feature.
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007527Znf_SWIM
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008270 zinc ion binding
Blast
[Close]
BLAST of TCONS_00071004 vs. Swiss-Prot (Human)
Match: ZSWM2 (E3 ubiquitin-protein ligase ZSWIM2 OS=Homo sapiens GN=ZSWIM2 PE=1 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 1.317e-52
Identity = 109/262 (41.60%), Postives = 153/262 (58.40%), Query Frame = 3 
Query:  165 ARLYLLRQTGPTGFLLKEHDGE-TKFKVLLGAVHSCDCNFFLKERELCKHILWILIRKFRIQKEDPIAFQLGLCERELNHVLYGQKQVENKQP-TKAASAGARE--MLKQKKIEKEDVCPICQDEIYKTKKSLTYCKFGCGNSVHVSCLKIWADHQHKSNNEEVIKCPLCRTEFASYKSILQEHRRS----VTRSQMRKNSLLSI-CVGCKQRAPSTSSTQSVYKCNTCNSF-LCQSCFHPNKHYGHQVKTKHGGGEKWEDL 920
            + +YLLR+ GPTGFLL+E + E   F+V LG  H C+C+ F K  ELCKHI W+L++KF++ +    A QLGL ERE++ +L G  +V+  QP T   +    E   +KQK+I+ ED+C ICQ+ + + K  +T+C+FGCGNS+H+ C+KI A++Q  SN   ++KCPLCR EFA  K IL+E + S        + R +  L I C  CKQ           YKC  C  + LCQ CF    H  H    +    +KW  L
Sbjct:   29 SSIYLLREMGPTGFLLREEEPEYMDFRVFLGNPHVCNCSTFPKGGELCKHICWVLLKKFKLPRNHESALQLGLGEREISDLLRGIHRVQTPQPGTNDENEHVEEDGYIKQKEIDSEDICSICQELLLEKKLPVTFCRFGCGNSIHIKCMKILANYQSTSNT-SMLKCPLCRKEFAPLKLILEEFKNSSKLVAAAEKERLDKHLGIPCNNCKQ----FPIEGKCYKCTECIEYHLCQECFDSCCHLSHTFTFREKRNQKWRSL 285
The following BLAST results are available for this feature:
BLAST of TCONS_00071004 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZSWM21.317e-5241.60E3 ubiquitin-protein ligase ZSWIM2 OS=Homo sapiens... [more]
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