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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071069 ID=TCONS_00071069|Name=TCONS_00071069|organism=Clytia hemisphaerica|type=transcript|length=3602bpRun BLAST on NCBI protein sequence of TCONS_00071069-protein >TCONS_00071069-protein ID=TCONS_00071069-protein|Name=TCONS_00071069-protein|organism=Clytia hemisphaerica|type=polypeptide|length=847bp MVSMFRSEEMKLCQLFLQSDAAYSCVSELGELGVVEFRDLNPDVNAFQRKRun BLAST on NCBI transcript from alignment at scaffold_58:1481838..1495598- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00071069 ID=TCONS_00071069|Name=TCONS_00071069|organism=Clytia hemisphaerica|type=transcript|length=13761bp|location=Sequence derived from alignment at scaffold_58:1481838..1495598- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_58:1481838..1495598- >TCONS_00071069 ID=TCONS_00071069|Name=TCONS_00071069|organism=Clytia hemisphaerica|type=CDS|length=2544bp|location=Sequence derived from alignment at scaffold_58:1481838..1495598- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00071069 vs. Swiss-Prot (Human)
Match: VPP1 (V-type proton ATPase 116 kDa subunit a isoform 1 OS=Homo sapiens GN=ATP6V0A1 PE=1 SV=3) HSP 1 Score: 971.074 bits (2509), Expect = 0.000e+0 Identity = 508/853 (59.55%), Postives = 621/853 (72.80%), Query Frame = 3
Query: 78 MVSMFRSEEMKLCQLFLQSDAAYSCVSELGELGVVEFRDLNPDVNAFQRKYVGEVRRCDEMERKLRFMLKEIEKAEIEVADTSENHEAPPPREMIDLEAQFEQLENEMKESNANFEQLQKTSLELNELKHILRKTQSFFEEAESQNVLQDSDTSGQIMPGEELSLLGEIDSNVPFGGRLGFVAGVIPRDRVAGFERLLWRACRGNVFFKQAEIDTKLYDPSSGDHVNKCVFIVFFQGEQLKQRVKKICEGFKASLYPCPETPAERREMAVGVMTRIEDVQTVLNQTQDHRHRLLQNIASNINGWLIKVKKIKAIYHTMNMFNIDVTEKCLIAECWAPVIDLDRIQKALQLGTQKNGSSVPPIINQMKTKQTPPTYNRTNKFTHGFQAIIDAYGVSDYQEVNPALYTLITFPFLFSVMFGDFGHGIVMAAFAAWMIYAEKKLANWKAGGEMFDTIFGGRYVILLMGIFSIYSGLLYNDMFSKSLNIFGSGWVELPQSKFDYNYTDVKRRVEDKTVDTLMFNPN-DTARETPYYFGVDPIWQTATNKLTFTNSLKMKLSVIFGVTHMTFGVILGLFNHLHFKDYLKIWTEFIPQLLFISCIFGYLVICIFYKWVVFSIR-DQYQPSLLLGLIGMFLHFGSKIEKADLLYTGQGTVQPLLVAIAVLAVPWMLLIRPFVLKSRAAKKQSSG----GHHRM----REDDKEAIINATDDSPSPTSDVHXXXXXXXXXXXXXXXNQAIHTIEYCLGCISNTASYLRLWALSLAHAQLSEVLWTMVFKIGLGMGGTLIGSIAIFVIFSAWACTTVVILLVMEGLSAFLHTLRLHWVEFNSKFYHGSGNKFVPFAFKTILE 2606
M +FRSEEM L QLFLQS+AAY CVSELGELG V+FRDLNPDVN FQRK+V EVRRC+EM+RKLRF+ KEI KA I + DT EN E P PR+MIDLEA FE++ENE+KE N N E L++ LEL ELK ILRKTQ FF+E + D D + E S +G P RLGFVAGVI R+R+ FER+LWR CRGNVF +QAEI+ L DP +GD+V+K VFI+FFQG+QLK RVKKICEGF+ASLYPCPETP ER+EMA GV TRI+D+Q VLNQT+DHR R+LQ A NI W IKV+K+KAIYHT+N+ NIDVT+KCLIAE W PV DLD IQ AL+ GT+ +GS+VP I+N+M+T QTPPTYN+TNKFT+GFQ I+DAYG+ Y+E+NPA YT+ITFPFLF+VMFGDFGHGI+M FA WM+ E ++ + K EMF T+F GRY+ILLMG+FS+Y+GL+YND FSKSLNIFGS W P F YN+T+ R L NP PY FG+DPIW ATNKLTF NS KMK+SVI G+ HM FGV L LFNH++FK L I+ FIP+++F++ +FGYLVI IFYKW + + PSLL+ I MFL F +LY+GQ +Q LV +A+L VPWMLL +P VL+ + +++ G G R+ E+D E I D + + D E E+E FDFG+ ++QAIHTIEYCLGCISNTASYLRLWALSLAHAQLSEVLWTMV IGL + +L G + +F F+A+A TV ILL+MEGLSAFLH LRLHWVEF +KFY G+G KF+PF+F+ I E
Sbjct: 1 MGELFRSEEMTLAQLFLQSEAAYCCVSELGELGKVQFRDLNPDVNVFQRKFVNEVRRCEEMDRKLRFVEKEIRKANIPIMDTGENPEVPFPRDMIDLEANFEKIENELKEINTNQEALKRNFLELTELKFILRKTQQFFDE------MADPDLLEESSSLLEPSEMGR---GTPL--RLGFVAGVINRERIPTFERMLWRVCRGNVFLRQAEIENPLEDPVTGDYVHKSVFIIFFQGDQLKNRVKKICEGFRASLYPCPETPQERKEMASGVNTRIDDLQMVLNQTEDHRQRVLQAAAKNIRVWFIKVRKMKAIYHTLNLCNIDVTQKCLIAEVWCPVTDLDSIQFALRRGTEHSGSTVPSILNRMQTNQTPPTYNKTNKFTYGFQNIVDAYGIGTYREINPAPYTIITFPFLFAVMFGDFGHGILMTLFAVWMVLRESRILSQKNENEMFSTVFSGRYIILLMGVFSMYTGLIYNDCFSKSLNIFGSSWSVRPM--FTYNWTEETLRGN----PVLQLNPALPGVFGGPYPFGIDPIWNIATNKLTFLNSFKMKMSVILGIIHMLFGVSLSLFNHIYFKKPLNIYFGFIPEIIFMTSLFGYLVILIFYKWTAYDAHTSENAPSLLIHFINMFL-FSYPESGYSMLYSGQKGIQCFLVVVALLCVPWMLLFKPLVLRRQYLRRKHLGTLNFGGIRVGNGPTEEDAEII--QHDQLSTHSEDADEPSEDEVFDFGDTMVHQAIHTIEYCLGCISNTASYLRLWALSLAHAQLSEVLWTMVIHIGLSV-KSLAGGLVLFFFFTAFATLTVAILLIMEGLSAFLHALRLHWVEFQNKFYSGTGFKFLPFSFEHIRE 832 The following BLAST results are available for this feature:
BLAST of TCONS_00071069 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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