TCONS_00071164 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071164
Unique NameTCONS_00071164
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1868

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071164 ID=TCONS_00071164|Name=TCONS_00071164|organism=Clytia hemisphaerica|type=transcript|length=1868bp
cacttttcgataaaagccgcaaatctagcccttcgggctttacagatctg
tgccTTTGACATGACTAATTAACAGACAAGTTTGCTAGTCTAAGATAAAA
CATTCATcgtgaaaaatgttgaaatcgaCAACACAATCTTCCTGTGTTCT
TATCTTATTCCCAAACTACTTTGTGGCTTTTTGTGCTACAgtaattaaaa
aatgataagaaagagaaaaatcaaaattgaatatcacGGAATCTCGAATA
TCATGTGATGGAGATTATTCTTATTGTATAAACACTTAACATTTAGTTGA
ATTTGAACTCCTTCGTACGTGTTCTAGACATTAACATGACTTGCGGTACT
TCAAAGGCGAAAACGTTATCTTCCTATCTAAAATATATTCACCAATCGAA
AGGAATCGTAAGAAATAAATCACGATAATATTCAATTCAATCGTGATGCC
CTTTGGgaccttttattgaaattaatGATAAATGAATCATGCGAACAGAG
CAGTATAAAAAGGTAGGAAAAGATCTTCTTAGCTGCATTCAAAAAAGCAG
AGTTATCTACTGGAATATACAAAGATGATACGAGCTGTAACCTTTGCGCT
CATAATAGCGCTTACAAGTGCAACGTCATTGAGTGATTATGATACAACTA
TCAATGGAAATACACTTGATGGCAAATacattcattttcaatctttgaGA
TACCCAGAAAGATGGGTCCGTGGTTGGTATCAATCAACAAATAAGTTGAA
GATCAAAGAATTTACCGAACGACAAGTTTACGATGAGTCTGTTACCCAAT
GGAAaGTCAAACATCTTGGAAACAACGTACTTGTTTTAGAATTCATGAGA
AGACCAAGTCGTTACATTCGAATGAGAGACAATGATAAAGATATGGAACG
ATCTGAAACTACTTATCCTGATGACAAAAACTGGGCAAAATGGAAGATCC
TCTGTACAGACACAACCATGGATGACTGTATTATCCAATCACAAAAAGAT
ACCAACAAATACTTCGATTCTGATAGCAGCAAGAAGTTACAAAGAAGTAG
CTTTGGCGATCCTAGATCAAGATTTCGAGTTCTTGCACCAACACCTAGTG
AATATTACGCATCGGTCTTGTCAACAGAAAACACTGGCAGTGCAGATTTG
CATAAAACAATTGTGATGTACGAAGGAATCAGTGAGACATCCTCAACAAC
TTTGACTGTTTCTGCTTCAGTCACGGCTGAAGTTCAAGCCGCTTTTGGAT
CAGGTTCCGCCACATTGTCTACAGAATGGAGTCAAACTACATCCAATACA
TGGACCAGTAGCACTACAATCTCAATCGATATTACTGTCCCTGCTGGAAA
GAAAGTTAACGTCAAACAACTTGTTGGTGTGTACGGGCCGTTTAGTGTCC
GATCGGCCCATTTCTTTATTGAAGAAACAGATGCTGCTACTGGGAAGAAG
CGAGAAATTACTAAAGATGGTTCAAGTGTTCGAAAGTTGGAAAATAATGA
TAATGATACTTTATTACAAACACTGGACGATGATATAGCAGGAAAGGTTT
TGGAAGATTTTGCTGCTAATTAAGGAGCAAACTGATGTTGTCATTTGAGA
GACGGAACTTTTTACTGGTTACCGATTTTTGTCTGTAATTTTTGTTTGTT
ATGATATATTCCCACGTACTTTAACTTTTGTATGCATTATAATCGATCAA
AATAACCTAAATATAATAATGAAtctttgtattcatatcttcaTATTCTC
TTTTGGCCTCAATGTTTACAGTAGACTCTCGTTAATTTaaactcgaacgg
ggaatcttatttgttcgagtaatagaaagattcgaattatagtgTATTTA
AAAAGGGCTTTTCCCTGA
Run BLAST on NCBI

protein sequence of TCONS_00071164-protein

>TCONS_00071164-protein ID=TCONS_00071164-protein|Name=TCONS_00071164-protein|organism=Clytia hemisphaerica|type=polypeptide|length=332bp
MIRAVTFALIIALTSATSLSDYDTTINGNTLDGKYIHFQSLRYPERWVRG
WYQSTNKLKIKEFTERQVYDESVTQWKVKHLGNNVLVLEFMRRPSRYIRM
RDNDKDMERSETTYPDDKNWAKWKILCTDTTMDDCIIQSQKDTNKYFDSD
SSKKLQRSSFGDPRSRFRVLAPTPSEYYASVLSTENTGSADLHKTIVMYE
GISETSSTTLTVSASVTAEVQAAFGSGSATLSTEWSQTTSNTWTSSTTIS
IDITVPAGKKVNVKQLVGVYGPFSVRSAHFFIEETDAATGKKREITKDGS
SVRKLENNDNDTLLQTLDDDIAGKVLEDFAAN
Run BLAST on NCBI

transcript from alignment at scaffold_6:177042..182343-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071164 ID=TCONS_00071164|Name=TCONS_00071164|organism=Clytia hemisphaerica|type=transcript|length=5302bp|location=Sequence derived from alignment at scaffold_6:177042..182343- (Clytia hemisphaerica)
CACTTTTCGATAAAAGCCGCAAATCTAGCCCTTCGGGCTTTACAGATCTG
TGCCTTTGACATGACTAATTAACAGACAAGTTTGCTAGTCTAAGATAAAA
CATTCATCGTGAAAAATGTTGAAATCGACAACACAATCTTCCTGTGTTCT
TATCTTATTCCCAAACTACTTTGTGGCTTTTTGTGCTACAGTAATTAAAA
AATGATAAGAAAGAGAAAAATCAAAATTGAATATCACGGAATCTCGAATA
TCATGTGATGGAGATTATTCTTATTGTATAAACACTTAACATTTAGTTGA
ATTTGAACTCCTTCGTACGTGTTCTAGACATTAACATGACTTGCGGTACT
TCAAAGGCGAAAACGTTATCTTCCTATCTAAAATATATTCACCAATCGAA
AGGAATCGTAAGAAATAAATCACGATAATATTCAATTCAATCGTGATGCC
CTTTGGGACCTTTTATTGAAATTAATGATAAATGAATCATGCGAACAGAG
CAGTATAAAAAGGTAGGAAAAGATCTTCTTAGCTGCATTCAAAAAAGCAG
AGTTATCTACTGGAATATACAAAGATGATACGAGCTGTAACCTTTGCGCT
CATAATGTAAGTTTTGACTTTTTTAGTAACAAATACATCATTTCCGATGT
TTTATCGCGAAAACGTAGGCTTCTGCTCATTTTCTAGCAAAAAGAGTTTC
TTATATGGGAAGTATGTCCATAGAGGTCTGTGACTACTTTATCGGAAATG
TAGCTATACTGATAAATTTTGATATTCGTCCATCTTAGACAAGAATTAAG
ACTAAAGACAAGTCTTCTTGTTACTGAATTCTCGGGTCGTATCTTGCTTT
ATTATCTTCATTTAGAAGTGTTTTTTTACTTCCTAATGCACAAATATACA
CCCCTGTCTCAGATCCCCGGTGAAAACCTTTATCGAGATCCCAATGGGGA
CAGAAATTATATTGTTCTTTTGTTTCGGAGTGCAATGTCTTTCATCAATT
TGGATATGAACCAAGTTCATTTTCCTAGACTTTAATTGCGGGATATTTTT
TCACTGCCACCGGGGACCGAACGTTAGCTAAATTTCCCAGCGGGGTGGGG
GTTTCCAGTGGGTTTGTGACACAGTAGTAAACCGTTACTTTGTATAATGC
CGACACACCTTACAATTCCATTATAGCAACTATCTGGTCTACAAAATAGT
TATCAGTGATTTTTAAAGAGCTNAGTGAAATCCGTTTGGAGCTCGAAATT
ATTTGCTGTAAATAAATAAATGCAATACAATTATTTTTAACCATTGGAAG
TGTTTGAAGTCGAATTTTCATTTTTCATTTTTAATATGGATAAAAACTTC
ACAATTTTCGGTCATAGGATGGTGACTTTCTCCTTGGATCTGTTTATGTG
TCTTTATTCGGGATTCATTTATTGGAAATGATTTCTAAACACCATGGACC
TAATCTAGGCTAAATCACCCTAATGTGTAACCCGAAAAAAAAACAGTAAT
TTGTCGTGGAGATTCTGGTACCGATCCATTTTCCGAAGTGTAACATGTCT
TCTTATTATAGTTACACAGAAAATTGTAGAATATTAAGGTTGTTAAAAAA
GTGTTTCTAAATTAAAGGTACAATCATGGCGAAAATCTATTGAGAATTTA
GCTTATTTCCTCGTTTTTCGAAGTTCGGGCGAGAAAGTCATTTTGGGGCT
AATTGATAAATCTATTCGAGTATTTCAATTCGGGAGGGGTTTATAGACTT
CCAGGCTATATTCTGAGCATTATTGGACTATTTTTGAACTTTTGGATCCT
TAGATTAAGTCTTAAGTCTAGTGTTAAAATTCAGAGTTAAAACTCTACCC
TTCCAACCTAACTTAGAGCACTTCCAAATCGTTTGTGGTTTTGAAAATTC
GTGGGAATTTCCCTTTTGAAATATTACGACCATGATTGCAGATTAGACAA
GGTGTGTCGGCATTACGCTAAGTTACTATAATATCTATCCATATAGAGTG
ATAAAAAATAAAGATTTTAACCTAAACTTTGTGGATATTCTATATACTAA
ATTTTTATATTCTTATCTTTGATTTTCTACTCATTTACTTCTTACTTCAG
AGCGCTTACAAGTGCAACGTCATTGAGTGATTATGATACAACTATCAATG
GAAATACACTTGATGGCAAATACATTCATTTTCAATCTTTGAGATACCCA
GAAAGATGGGTCCGTGGTTGGTATCAATCAACAAATAAGTTGAAGATCAA
AGAATTTACCGAACGACAAGTTTACGATGAGTCTGTTACCCAATGGAAAG
TAAATACACATTTTTATAAGAGCATAATTTATAAGAACATAAAGCTACGA
AAATATTAAGAGCAAAGCAGAGACAATTTAAGGCCGAGTTTCTAAGGAAA
TCAGGAAATCGCACAGAAATACTCAGAAAATGGTCACTTAAAATACTTTT
AGGCTTGGAGCTAAATAACAATTTTATGGAGTATTCTTATTTTTTTAATT
GGATTGTGATTTTCATGAATAAGATATTTTTCTTGCGAGAATAGATAGTC
TTCAATCCTTCCATCTAGAACAAAATTGTCTTCTTTATTTCTCAGGTCAA
ACATCTTGGAAACAACGTACTTGTTTTAGAATTCATGAGAAGACCAAGTC
GTTACATTCGAATGAGAGACAATGATAAAGATATGGAACGATCTGAAACT
ACTTATCCTGATGACAAAGTATGTTAATACTGAAATCGACTATAAAAATA
CGTATTTACCTAATTGATAAAGAAAATTAAAGCTTTACAGACCCGAATGA
CCCCTAATTCAGCCTTGTGTTGGGTTGTGTTATCTAATTCCTACATAGCC
GGTTTTAGAACTTGTCGTACTTATCAGAGGAAGAGATTTATAATTGTAAT
TTCATTGTCTTTGTCTTTGTTTCATTGTCATNTAGAACTTGTCGTACTTA
TCAGAGGAAGAGATTTGTAATTGTAATTTAATTGTCTTTTAATGAGCGTT
GCACTCCTTTGCATGTTCCCGACATACTTGCTCTATTGTCTTAAATCCGC
TAGTGTCCTATACCAAACTTTTGTTGTTTTTTGGGACAATACACCTTCTC
GAAATGCTCAAAATAATTCTGAACCTCTTTTCAAAGTACTGTTGCCAAGA
AACTTTAAAATCATCAGACATAATTNCTCTTTTCAAAGTACTGTTGCCAA
GATACTTTAAAATCATCAGACATAATTGATGTTTACTGTGATTTTTGGAA
AAACATATTACATGTTTACATGTCATTTGAATTAATTATTCTATATTCGA
AAACAAGGTCTGCAATGCTGTTGATTTATCTGGAGAAGCGTGTCCCCTCT
AATTACAACGGCTCGTCGCATATTTGAAAAATAAATTTCTTAAGACAAAA
AAAACTTATCTAAGAACGATGTTTTCATTCCTATTCGTAACCTCCTATTG
CAGAACTGGGCAAAATGGAAGATCCTCTGTACAGACACAACCATGGATGA
CTGTATTATCCAATCACAAAAAGATACCAACAAATACTTCGATTCTGATA
GCAGCAAGAAGTTACAAAGAAGTAGCTTTGGCGATCCTAGATCAAGATTT
CGAGTTCTTGCACCAACACCTAGTGAATATTACGCGTGAGTTGTTATGAC
CTTCTATATGAAGTTTTGTGTCGAGAAAGCTTTTTTATGTGATGGTAACG
GCGGCCCGTTATAGACAATCTTTCAATCTTTCCCGCGTCGAAAAGTTTTT
GCGTAGGTCTTTTTGTCATTTTAGGCAAGTTTTTACGTATTTGAGGATTC
TGCATAGGTCTTTTTGTCATTTTAGGCAATTGCATATTTAAGGATTTTGC
ATAGGTCTTTTTATCAGTTAAAAGCCTTTACAATTGATGAAGTTCTTTGA
TTAAAAATTAGCAATTGCGTTTTGAAAGGGTCCCAAAAAAAACGAAATAT
TAAAAATCGACTCCGTCATTAGGGTCATAAAATCTAGTGATTTTAAGCTG
AAAATTAGAAAAAAGGCTCTTACAAAGGGTCGCAAAAACGTCGATATTCA
GTCTCTCAAACGCTCGCAAACCAGGTACCCCCCCCCCCAATGGTGGTTAT
ATTTCAACACCAAAGTTAAATCTAAATTTTTTTATTCTTTNCCCCCTCCC
CGGAGGTGATATTTCAACACCAAAATTAAAGCTAAATTTCTTTATTCTTC
AGAAATATTCTTCTTTTCTTTCCAGATCGGTCTTGTCAACAGAAAACACT
GGCAGTGCAGATTTGCATAAAACAATTGTGATGTACGAAGGAATCAGTGA
GACATCCTCAACAACTTTGACTGTTTCTGCTTCAGTCACGGCTGAAGTTC
AAGCCGCTTTTGGATCAGGTTCCGCCACATTGTCTACAGAATGGAGTGTA
AGTAATTTACCTTTTGCTCCTTTAAAGTAAATGCAGGCGGAGGGGCAGGG
CACTTAGGCAAAATGGATATATCAATTAGGCATGTATCTAGAGGTATCTT
TTACATACCTCTGAACTATCTGATGGCTATCCAATAAATAGTCAATTCTC
TGTAAACAATAGAAAAGTAAAAAAAAAACACGTAATATGAAAACATCCTT
CCAAGGGTCAAAGGATTAATTCTTTTGGAATTTGTGCAAATTTTTGCCTT
TTGATTAAGGGTAGGCTTTTTTTGGCATGTCATAAGCATAATATATGATT
ATTTAATACTTTATAGCAAACTACATCCAATACATGGACCAGTAGCACTA
CAATCTCAATCGATATTACTGTCCCTGCTGGAAAGAAAGTTAACGTCAAA
CAACTTGTTGGTGTGTACGGGCCGTTTAGTGTCCGATCGGCCCATTTCTT
TATTGAAGAAACAGATGCTGCTACTGGGAAGAAGCGAGAAATTACTAAAG
ATGGTTCAAGTGTTCGAAAGTTGGAAAATAATGATAATGATACTTTATTA
CAAACACTGGACGATGATATAGCAGGAAAGGTTTTGGAAGATTTTGCTGC
TAATTAAGGAGCAAACTGATGTTGTCATTTGAGAGACGGAACTTTTTACT
GGTTACCGATTTTTGTCTGTAATTTTTGTTTGTTATGATATATTCCCACG
TACTTTAACTTTTGTATGCATTATAATCGATCAAAATAACCTAAATATAA
TAATGAATCTTTGTATTCATATCTTCATATTCTCTTTTGGCCTCAATGTT
TACAGTAGACTCTCGTTAATTTAAACTCGAACGGGGAATCTTATTTGTTC
GAGTAATAGAAAGATTCGAATTATAGTGTATTTAAAAAGGGCTTTTCCCT
GA

Coding sequence (CDS) from alignment at scaffold_6:177042..182343-

>TCONS_00071164 ID=TCONS_00071164|Name=TCONS_00071164|organism=Clytia hemisphaerica|type=CDS|length=999bp|location=Sequence derived from alignment at scaffold_6:177042..182343- (Clytia hemisphaerica)
ATGATACGAGCTGTAACCTTTGCGCTCATAATAGCGCTTACAAGTGCAAC
GTCATTGAGTGATTATGATACAACTATCAATGGAAATACACTTGATGGCA
AATACATTCATTTTCAATCTTTGAGATACCCAGAAAGATGGGTCCGTGGT
TGGTATCAATCAACAAATAAGTTGAAGATCAAAGAATTTACCGAACGACA
AGTTTACGATGAGTCTGTTACCCAATGGAAAGTCAAACATCTTGGAAACA
ACGTACTTGTTTTAGAATTCATGAGAAGACCAAGTCGTTACATTCGAATG
AGAGACAATGATAAAGATATGGAACGATCTGAAACTACTTATCCTGATGA
CAAAAACTGGGCAAAATGGAAGATCCTCTGTACAGACACAACCATGGATG
ACTGTATTATCCAATCACAAAAAGATACCAACAAATACTTCGATTCTGAT
AGCAGCAAGAAGTTACAAAGAAGTAGCTTTGGCGATCCTAGATCAAGATT
TCGAGTTCTTGCACCAACACCTAGTGAATATTACGCATCGGTCTTGTCAA
CAGAAAACACTGGCAGTGCAGATTTGCATAAAACAATTGTGATGTACGAA
GGAATCAGTGAGACATCCTCAACAACTTTGACTGTTTCTGCTTCAGTCAC
GGCTGAAGTTCAAGCCGCTTTTGGATCAGGTTCCGCCACATTGTCTACAG
AATGGAGTCAAACTACATCCAATACATGGACCAGTAGCACTACAATCTCA
ATCGATATTACTGTCCCTGCTGGAAAGAAAGTTAACGTCAAACAACTTGT
TGGTGTGTACGGGCCGTTTAGTGTCCGATCGGCCCATTTCTTTATTGAAG
AAACAGATGCTGCTACTGGGAAGAAGCGAGAAATTACTAAAGATGGTTCA
AGTGTTCGAAAGTTGGAAAATAATGATAATGATACTTTATTACAAACACT
GGACGATGATATAGCAGGAAAGGTTTTGGAAGATTTTGCTGCTAATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044232XLOC_044232Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071164-proteinTCONS_00071164-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071164-exon-scaffold_6-1575043694:181738..182343TCONS_00071164-exon-scaffold_6-1575043694:181738..182343Clytia hemisphaericaexon
TCONS_00071164-exon-scaffold_6-1575043694:180045..180243TCONS_00071164-exon-scaffold_6-1575043694:180045..180243Clytia hemisphaericaexon
TCONS_00071164-exon-scaffold_6-1575043694:179626..179748TCONS_00071164-exon-scaffold_6-1575043694:179626..179748Clytia hemisphaericaexon
TCONS_00071164-exon-scaffold_6-1575043694:178709..178890TCONS_00071164-exon-scaffold_6-1575043694:178709..178890Clytia hemisphaericaexon
TCONS_00071164-exon-scaffold_6-1575043694:177947..178118TCONS_00071164-exon-scaffold_6-1575043694:177947..178118Clytia hemisphaericaexon
TCONS_00071164-exon-scaffold_6-1575043694:177042..177627TCONS_00071164-exon-scaffold_6-1575043694:177042..177627Clytia hemisphaericaexon
TCONS_00071164-exon-scaffold_6-1510915933:181738..182343TCONS_00071164-exon-scaffold_6-1510915933:181738..182343Clytia hemisphaericaexon
TCONS_00071164-exon-scaffold_6-1510915933:180045..180243TCONS_00071164-exon-scaffold_6-1510915933:180045..180243Clytia hemisphaericaexon
TCONS_00071164-exon-scaffold_6-1510915933:179626..179748TCONS_00071164-exon-scaffold_6-1510915933:179626..179748Clytia hemisphaericaexon
TCONS_00071164-exon-scaffold_6-1510915933:178709..178890TCONS_00071164-exon-scaffold_6-1510915933:178709..178890Clytia hemisphaericaexon
TCONS_00071164-exon-scaffold_6-1510915933:177947..178118TCONS_00071164-exon-scaffold_6-1510915933:177947..178118Clytia hemisphaericaexon
TCONS_00071164-exon-scaffold_6-1510915933:177042..177627TCONS_00071164-exon-scaffold_6-1510915933:177042..177627Clytia hemisphaericaexon
TCONS_00071164-exon-scaffold_6-1491911889:181738..182343TCONS_00071164-exon-scaffold_6-1491911889:181738..182343Clytia hemisphaericaexon
TCONS_00071164-exon-scaffold_6-1491911889:180045..180243TCONS_00071164-exon-scaffold_6-1491911889:180045..180243Clytia hemisphaericaexon
TCONS_00071164-exon-scaffold_6-1491911889:179626..179748TCONS_00071164-exon-scaffold_6-1491911889:179626..179748Clytia hemisphaericaexon
TCONS_00071164-exon-scaffold_6-1491911889:178709..178890TCONS_00071164-exon-scaffold_6-1491911889:178709..178890Clytia hemisphaericaexon
TCONS_00071164-exon-scaffold_6-1491911889:177947..178118TCONS_00071164-exon-scaffold_6-1491911889:177947..178118Clytia hemisphaericaexon
TCONS_00071164-exon-scaffold_6-1491911889:177042..177627TCONS_00071164-exon-scaffold_6-1491911889:177042..177627Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:177042..182343 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2047.08	2083.77	1270.95	1044.06	78.9775	55.8908	1019.25	1284.11	2455.11	2039.5	858.787	1078.35	0.370107	0.310849	0.0980655	0.158364	1291.27	931.713	6.59415	0.428812	4.7205	3.73892	798.034	608.811	0.0689204	0.411707	35.5075	47.3487	286.381	350.74
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071164 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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