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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071216 ID=TCONS_00071216|Name=TCONS_00071216|organism=Clytia hemisphaerica|type=transcript|length=2266bpRun BLAST on NCBI protein sequence of TCONS_00071216-protein >TCONS_00071216-protein ID=TCONS_00071216-protein|Name=TCONS_00071216-protein|organism=Clytia hemisphaerica|type=polypeptide|length=707bp MVEIMENIDEVHLSSDSEDEVVDKKTKKKQHKKLMKDIETLSGATKKRSKRun BLAST on NCBI transcript from alignment at scaffold_60:46718..54353+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00071216 ID=TCONS_00071216|Name=TCONS_00071216|organism=Clytia hemisphaerica|type=transcript|length=7636bp|location=Sequence derived from alignment at scaffold_60:46718..54353+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_60:46718..54353+ >TCONS_00071216 ID=TCONS_00071216|Name=TCONS_00071216|organism=Clytia hemisphaerica|type=CDS|length=2124bp|location=Sequence derived from alignment at scaffold_60:46718..54353+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00071216 vs. Swiss-Prot (Human)
Match: UT14A (U3 small nucleolar RNA-associated protein 14 homolog A OS=Homo sapiens GN=UTP14A PE=1 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 9.291e-36 Identity = 70/144 (48.61%), Postives = 96/144 (66.67%), Query Frame = 2
Query: 1694 QRMNIRDAFANDDVIEDFVQXXXXXXXXXXXXXVDNVLPGWGDWGGAGLKVNTRKRKRFTKDPTKEKSRLDDGKANVIINETRNRKFAKHQVSDVPFPYTNRTEFERSIRQPIGEHWNTPSSYEKLIQPRITTNSGTMIDPLKA 2125
R I++AFA DDVI DF++EK +E +KPK VD LPGWG+WGG GLK + +KR+RF + R D NVIINE RN A HQV +P+P+T+ +FER+I+ PIG WNT +++KL P++ T G +I+P+KA
Sbjct: 591 HRQMIKEAFAGDDVIRDFLKEKREAVEASKPKDVDLTLPGWGEWGGVGLKPSAKKRRRFLIKAPEGPPRKDKNLPNVIINEKRNIHAAAHQVRVLPYPFTHHWQFERTIQTPIGSTWNTQRAFQKLTTPKVVTKPGHIINPIKA 734 HSP 2 Score: 139.813 bits (351), Expect = 4.318e-34 Identity = 113/262 (43.13%), Postives = 168/262 (64.12%), Query Frame = 2
Query: 266 KVNLSDLVGCLKTDTKKIASMKNQLRTMEKSKQVLEKPLHKPEQQRVERRVAYDETKKDISKWDETVRKNRDAETLNFPLQSYQAPKQTISTISTNFKPQNDLEREIAEVLKGSQHLLERKDKELTEHEEEALKNFDLQEALERRKELQKMRALQSYYEAXXXXXXXXXXXXXXXXXXXEKQKALSNVDLEKLSKDDPEMFEKHLEKAEKMRAMERASLRHRNSSKWAKNVITKGKQNKEDQERIREQLRISRELTNHKTVS 1051
K+ L+DL+ +KT + +A++K QL + KSK+ +E PL+K E +R+ R VA+++T + +SKWD V KNR AE L FPL+ + I + + +K + LE+EI +L ++ + D LT E+ +L+ L+EA RR ELQ+ RALQSYYEAK RR+KKIKSKKYH+++KK K K + + E+L K +P + LEK EK R MER SL+H+NS KWAK+ K + E ++ ++EQL ++ELT V+
Sbjct: 84 KLVLADLLEPVKTSSS-LATVKKQLSRV-KSKKTVELPLNKEEIERIHREVAFNKTAQVLSKWDPVVLKNRQAEQLVFPLEKEEPAIAPIEHVLSGWKARTPLEQEIFNLLHKNKQPV--TDPLLTPVEKASLRAMSLEEAKMRRAELQRARALQSYYEAKARREKKIKSKKYHKVVKKGKAKK-ALKEFEQLRKVNPAAALEELEKIEKARMMERMSLKHQNSGKWAKSKAIMAKYDLEARQAMQEQLSKNKELTQKLQVA 340 The following BLAST results are available for this feature:
BLAST of TCONS_00071216 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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