TCONS_00071260 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071260
Unique NameTCONS_00071260
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3284

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071260 ID=TCONS_00071260|Name=TCONS_00071260|organism=Clytia hemisphaerica|type=transcript|length=3284bp
ATCATTTTAAAGATCATCTCCTCCTTGTCATAAGCAAGAGAAGAGAGCTT
TCGTGCATTTAGGAAAAAACCTTTTCGCAActtctttcaatttctttgaa
GAAATGGCTCAATCAATTCCATCAAATCCTGCTGGAGACAAATACGACCA
CCAATGGGAAGCTTTAGCTGGATGGTTTCTCGGGCCACGTGCAGAAAACC
GaaacattttcaatgatttGATGTTGAAAGCTTTGAATTGGCATGAAGAT
CGACGTGAGGAATTCTTTCCAGCCGATCCTTCTTATTTCACGGAGGAGAT
CAAAAATTCCGACGCTGCTCAACATGAGTATAAAGATATGGAAAAGCAAA
TGAAAGAAATGCATCGAGAATTGAACAAATCCATTCCTTTCTTTAGCACC
AGATACCAgGGTCACATGACATGGGACGTGACAATGCCGTCGTTCTTGGG
ATACGTTTCCGGATTGCTTTGGAATCAAAACAACGTCGATTCAACTGCTT
CACCAGTCACAACCAAGTTTGAAGTGGAAGTTGGTCAACAACTTTGCAAA
TTGATGCGATTTGACGACACCAAAGTCACACCATGGGGTCATTTGACAGG
ATGTGGATCAGTCGCTAATATTGAATCAATGTGGGCTGCAAGGAACACCA
AATTACATCCATTGGCTTTGAAAGACTCTTGTGCTGACCCTGATTTCCCC
GAATTAATCGACGGTTTGGAGTGCAAGGTATTTGTCCCTGgtcaacaaaa
agaaaagactttgaaagaatGCACCGAATGGGAATTACTGAATTTGAGAA
TCGATGATATTTGTTCTTTGACTGATGACGTTATCAAGTGTATCGAGGAG
AGAAATCCGGatttcaaaattgacgtcaaagcaACGGTCGACAAAGCTTT
GGAGAGAAATTCACCAGTGCAACTTGGCTTACCAGAATTTTACCGACGAC
ATAAGATAGGTGAACCAAGCGCAAAAGATGCATCAGTGAGAACATATCCA
AGAGTCTTTTCACCAGGAACAAATCATTATTCATGGCCGAAAGCATCCAC
CATTCTTGGCATCGGTGATTCTAATAACATTCACATTCAAGTTGACAGCA
AAGCTCGTCAAGATATTGAGACTCTGGAGAAAGAATTGGATTATGCATTG
GAACACCAGATTGCAGTGTTCATGGTAGTGGCAGTGATTGGTTCAACAGA
AGAAAGTGCTGTGGATGATATCGCAAGAATCTTGACTCTCAAACCAAAAT
ATGAAGCGAAGGGTTTGACATTTTCGGTGCACGCAGATGCAGCATGGGGT
GGATATTTGAATTGTATGACCCACGAAACTGGTGACAAAGAAAGTAACGT
TTATTCCAATTGTCTTCCAACAAAAGCTCATGATTTCGTTCCTGCTATTC
CACTTTCCGATTTCGTCAAGAAACAATATGTCAGTTTGCAGTACGCTGAT
ACAGTGACCATCGATCCACACAAGTCTGGATTTTGTCCTTACCCTGCCGG
TGCTCTTCTCTATCGAAACGGAACAATGAAAGGTTTCATCACACTTGCTG
CACCAGAAGTTTTCCACAGTCCTGATGATTTGAACGTTGGAATTTATGGT
TTAGAAGGATCGAAACCTGGAGCTGCAGCTTGTGGTGTTCTCTTGTCTCA
TCGGGTAATTGGATTAGATCAAAACGGTTACGGTCGAATTCTTGGTCAAT
GTCAACTTGGTGCCAAACTGTTCTACTGCATGTGGGAAACAGTCGCCAGA
GATGACGATCCTTTCATCTGTTGTAACTTCATTCCACTGGATTTGAAAGA
ATTACAAGAAAAAGGATTCGCATTCAAAACGCAACAAGATGTCCATGACT
ACATCAAGAAACATATCATCGATAAACCTAATGAACAACTTGTCAAGAAT
GTCCACAAAGAAATTGATTTCTTGGGAATCGTTGGTCCTGACGCCTTGAT
CAATTCGTTCACCGTCAACTGTAAGGATCAAAGCACTGGCAAAGGTCAAC
AAAATATCGAGCTGGTCAACGATTTACAAAACCTCGTCTTCAACGAATTG
ACTTCGAGTGTTGGCGAAGACACAAAACGTGTGAAGATGTTTTTGACAAC
CTCCAAACTGGAATATGCAAATTATGGGAAATCTGTCCAACTATTGAAGG
AAAGATTGAATTTACCGACAGAAAATACCCATGATGCACTTGGATTTTTG
AGGAACACTTGTATGGAACCGTATCAAGCAAGTGAAGCTTATGTGGAAGT
TCTTGGTGATTTGTTCAGAAAGACTGTTCTTACTTGCATCGGTGCTCTGG
ACACATCATACGGAGAAGAATACGGAGATGCTTTGGATTATCAGACCTTC
ACTGTTGTCAACAATCTTCGAAAAGACGGAAAAATCTTCTTGGATTTCGT
TCCCACTTTCACCAAGAAACAATCGCAATATCAAGCCGTCTTCAGAGTGA
AAATCCTCCCGGAAGACCAAGCAACATTTAGGGAGATTCAATCAAAAGCA
ACCGAACCACTCTTCATGAGAACAACTGAGAAAGTCAACCTTTTCCATTT
CGTCAAAAATGATTTGGCAACAAGAACCATGGCTCTTTACCAAGGAGCCA
AGACTTCGAACACGTGTCTGGCAAGCATTCAATTTCACATTGACGAAGTT
TGGAGAATGGAACGTTTCGAATCACCACAATATGCAGAATACAATaaact
tcaaaaatatttcttatacgGAGATGAAGAAGAAGCCTTCATGTCACATG
TCGTCACCAAACAACCCNCAGAATACAATaaacttcaaaaatatttctta
tacgGAGATGAAGAAGAAGCCTTCATGTCGCATGTCGTCACCAAGCAACC
CGATTTTTACCAGGTCGTGCGTCTAGGTGAATTGCCACATTCAGTGGAAC
CTCAATTATTGAACCTTGGTTTGATGGTTGAATTACCAGCTATTCCTGGA
ACTCCATTGACCGTAGATGGTAAAATCATCGACCCTCTTCAAACTACTCG
ATATGGTGGCAACTACAGAGGTCGGCAATTTGCAGAATGCACAACTTCAC
TTTTGGTTGGTGGTGAGAATTGCAAAGTGTATTTCGATTCTGAATATTTG
AACACACCTGTCACTGGAACTGATTGCTCATTGGTTTGAATCCGTACCAT
ATCACAAACAATTAAATAATAATCTCAGTATATAAAAACCACTTTCTGTT
aaattaaatgtttataaaaaattgtaaaaacgaaaaaaaatattcaagtt
aactacaaagttcaaattttttcataccTTCTCT
Run BLAST on NCBI

protein sequence of TCONS_00071260-protein

>TCONS_00071260-protein ID=TCONS_00071260-protein|Name=TCONS_00071260-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1011bp
MAQSIPSNPAGDKYDHQWEALAGWFLGPRAENRNIFNDLMLKALNWHEDR
REEFFPADPSYFTEEIKNSDAAQHEYKDMEKQMKEMHRELNKSIPFFSTR
YQGHMTWDVTMPSFLGYVSGLLWNQNNVDSTASPVTTKFEVEVGQQLCKL
MRFDDTKVTPWGHLTGCGSVANIESMWAARNTKLHPLALKDSCADPDFPE
LIDGLECKVFVPGQQKEKTLKECTEWELLNLRIDDICSLTDDVIKCIEER
NPDFKIDVKATVDKALERNSPVQLGLPEFYRRHKIGEPSAKDASVRTYPR
VFSPGTNHYSWPKASTILGIGDSNNIHIQVDSKARQDIETLEKELDYALE
HQIAVFMVVAVIGSTEESAVDDIARILTLKPKYEAKGLTFSVHADAAWGG
YLNCMTHETGDKESNVYSNCLPTKAHDFVPAIPLSDFVKKQYVSLQYADT
VTIDPHKSGFCPYPAGALLYRNGTMKGFITLAAPEVFHSPDDLNVGIYGL
EGSKPGAAACGVLLSHRVIGLDQNGYGRILGQCQLGAKLFYCMWETVARD
DDPFICCNFIPLDLKELQEKGFAFKTQQDVHDYIKKHIIDKPNEQLVKNV
HKEIDFLGIVGPDALINSFTVNCKDQSTGKGQQNIELVNDLQNLVFNELT
SSVGEDTKRVKMFLTTSKLEYANYGKSVQLLKERLNLPTENTHDALGFLR
NTCMEPYQASEAYVEVLGDLFRKTVLTCIGALDTSYGEEYGDALDYQTFT
VVNNLRKDGKIFLDFVPTFTKKQSQYQAVFRVKILPEDQATFREIQSKAT
EPLFMRTTEKVNLFHFVKNDLATRTMALYQGAKTSNTCLASIQFHIDEVW
RMERFESPQYAEYNKLQKYFLYGDEEEAFMSHVVTKQPXEYNKLQKYFLY
GDEEEAFMSHVVTKQPDFYQVVRLGELPHSVEPQLLNLGLMVELPAIPGT
PLTVDGKIIDPLQTTRYGGNYRGRQFAECTTSLLVGGENCKVYFDSEYLN
TPVTGTDCSLV
Run BLAST on NCBI

transcript from alignment at scaffold_60:858079..865127+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071260 ID=TCONS_00071260|Name=TCONS_00071260|organism=Clytia hemisphaerica|type=transcript|length=7049bp|location=Sequence derived from alignment at scaffold_60:858079..865127+ (Clytia hemisphaerica)
ATCATTTTAAAGATCATCTCCTCCTTGTCATAAGCAAGAGAAGAGAGCTT
TCGTGCATTTAGGAAAAAACCTTTTCGCAActtctttcaatttctttgaa
GAAATGGCTCAATCAATTCCATCAAAGTAAGtatgaaatgtgaaaaaatg
atgaagaaaagcgggtttttgaaaatctttcaaattgatTTACTTATAGG
ATTTAGAATCTTTATTTATTGTAGCTGTTTTGATTAAAAACTTCAGTTct
attttttccatctttttCAGTCCTGCTGGAGACAAATACGACCACCAATG
GGAAGCTTTAGCTGGATGGTTTCTCGGGCCACGTGCAGAAAACCGaaaca
ttttcaatgatttGATGTTGAAAGCTTTGAATTGGCATGAAGATCGACGT
GAGGAATTCTTTCCAGCCGATCCTTCTTATTTCACGGAGGAGATCAAAAA
TTCCGACGCTGCTCAACATGAGTATAAAGATATGGAAAAGCAAATGAAAG
AAATGCATCGAGAATTGAACAAATCCATTCCTTTCTTTAGCACCAGATAC
CAggtacaaaatcataaaatcattcAAGGGTATCTAATTCTTTTCCTTGT
TCTACTGGAATACCTAGGCTCtggtgtctttttttaattcttccTTAATT
CAATGAATAGTTTGAGATGCTAGTTTGGGAAAAGACTTCTTGATCAAAAG
GGGAGTGTGTGAGTTTAACTTGTTAAATTGCCAATGTTTAGGGTCACATG
ACATGGGACGTGACAATGCCGTCGTTCTTGGGATACGTTTCCGGATTGCT
TTGGAATCAAAACAACGTCGATTCAACTGCTTCACCAGTCACAACCAAGT
TTGAAGTGGAAGTTGGTCAACAACTTTGCAAATTGATGCGATTTGACGAC
ACCAAAGTCACACCATGGGGTCATTTGACAGGATGTGGATCAGTCGCTAA
TATTGAATCAATGTGGGCTGCAAGGAACACCAAATTACATCCATTGGCTT
TGAAAGACTCTTGTGCTGACCCTGATTTCCCCGAATTAATCGGTATGGAC
ATTTGACATAAGCGCTTTTCTAATTCCACANGATCAGTCGCTAATATAGA
ATCGATGTGGGCTGCAAGAAACACCAAATTACATCCATTGGCTTTGAAAG
ACTCTTGTGCTGACCCTGATTTCCCCGAATTAATCGGTACGGACATTTGA
CATAAGCGCTTTTCTAATTCCACAAATGATGAGACTAAAATAGCTAATTT
GGGACAAGATTTTTTGCATAGGATATTTCGAATCTTTGGAACGGTAGATT
TCACagcttttttgcttaaaaacgattaaatagtgctttttaagagtttt
aagctattttagtgaaaattcgtcgcggtccttccccttcgctggacttc
aatgggtcttatcctTTGCAAgagtgtgtcccacgaggtctaggaccatt
gggaaccagctcggccccgtgtagagctcagaataagcttaactaagcct
tcaatacagcgctgtaagcttacagcgtaagtccctGGGTgactctgaag
gcctaaaaaccagttttcagtAGTTCATCACCGGTACGTTTCGTATTGCT
ATGTGTCTATAAAGAGTTCTCAATTCTAAAGTTGATAATGCTAGATTTTA
AGCATTCTCCAATTTAAGATAATAAAATCCAATCTTTATTTTCCAGACGG
TTTGGAGTGCAAGGTATTTGTCCCTGgtcaacaaaaagaaaagactttga
aagaatGCACCGAATGGGAATTACTGAATTTGAGAATCGATGATATTTGT
TCTTTGACTGATGACGTTATCAAGTGTATCGAGGAGAGAAATCCGGattt
caaaattgacgtcaaagcaACGGTCGACAAAGCTTTGGAGGTAAAAATTT
GTACTTTAAATTTCAACTATTGATTTGATTCCCACTACTTTTAAAAGTAG
ACCCAAATTAAGTTCTGAGACAGGTTTACTCTTTCTTTGTTCTCGAAGCT
TTGTTATTCAACTACCATAATCCCATTTTCGGCCTTGACCACCAATGAAG
AATTTGGTAAATCAACCTTCACTTTTTCATTCAGAGAAATTCACCAGTGC
AACTTGGCTTACCAGAATTTTACCGACGACATAAGATAGGTGAACCAAGC
GCAAAAGATGCATCAGTGAGAACATATCCAAGAGTCTTTTCACCAGGAAC
AAATCATTATTCATGGCCGAAAGCATCCACCATTCTTGGCATCGGTGATT
CTAATAACATTCACATTCAAGTTGACAGCAAAGCTCGTCAAGATATTGAG
AGTAAGTTCAATTATCTTTCTGTAAAACAAGGCTTCTTTTTCGCAGTCgg
taaaaataattaaaatgacCTGGTGACCTGGTGACTAATTAAATCAGCTC
AGTCTGTAAGGCATTGATACTCTAACGCAGTTAACATATCACGAAAAGTC
TCTCGGAAAAATCTCCCTAAGTTTTACCTGACACGATTGTTCAAGAATCA
TATGCAGTTAACATATCACGAAAAGTCTCTCGGAAGAATCTCCCTAAGTT
TTACCTGACACGATTCTTCAAAGTTTATCTTCTCACCAACAGCTCTGGAG
AAAGAATTGGATTATGCATTGGAACACCAGATTGCAGTGTTCATGGTAGT
GGCAGTGATTGGTTCAACAGAAGAAAGTGCTGTGGATGATATCGCAAGAA
TCTTGACTCTCAAACCAAAATATGAAGCGAAGGTATAATCTGGTAtttaa
tcccgggggggggcactcgatctgaaaacgaccatacgttcggcccaaaa
tttggcttccaaaatcggacccttacagtgcactttttaaaaatttctcg
caaaatttttgcaattttccaagaaaatgtggtatttttcctccaaaatt
gaccaattttaccaaaaaattggccttttatcacaatttcctacccttac
agtgcactagctgaactataaaaaacctacccttaagggccaaacgtctg
gtaggtcatttaccttgagtgccccccccggtatttaatttcttttatag
AGACAGTGAAAAACATTTAGTTTTCCGGTTTCGGTGTAATGCAACGAACT
TACAGTTATCCTTCACTCTAAGTATTTTTATGTCGTTTTTCGTATAAGCA
ATATTTTGGctcaaatccttttttttttaatgcagAAAATCATATTCCTT
GATTACTTTGATGTCCAAGTTGGCATTTGACTCGTTTTTCTAATTCATCC
TTTTTTGATAGAGAATAACCTGACTTCTCTCCAGGGTTTGACATTTTCGG
TGCACGCAGATGCAGCATGGGGTGGATATTTGAATTGTATGACCCACGAA
ACTGGTGACAAAGAAAGTAACGTTTATTCCAATTGTCTTCCAACAAAAGC
TCATGATTTCGTTCCTGCTATTCCACTTTCCGATTTCGTCAAGAAACAAT
ATGTCAGTTTGCAGTACGCTGATACAGGTGAGAAACGCTATTGATCGAAT
TTCATAATGTAAATGGTTTAACTCTTAAAAAACACTTTACTCAATCTGAC
TGCAGTGCTCTAAtactattcttgatatgcgcaAGTCACTTTTCTAACGG
AATCATCTGAAAATGTTGGGATTCATCCTGGTCGtatactaaaaatagaa
acactgtGCTCAAAATTCGACTTTATGGGGTTATTCCGttagaaatttta
aagtcaTCTTGACTAACGTAATTAAGAATTGACGAAATTTGTGCTTTACA
GGAAAAACGTGTGGAGTTTTGATtccttgattttaaaaattacctCTTTA
ATCTCAGTGACCATCGATCCACACAAGTCTGGATTTTGTCCTTACCCTGC
CGGTGCTCTTCTCTATCGAAACGGAACAATGAAAGGTTTCATCACACTTG
CTGCACCAGAAGTTTTCCACAGTCCTGATGATTTGAACGTTGGAATTTAT
GGTTTAGAAGGATCGAAACCTGGAGCTGCAGCTTGTGGTGTTCTCTTGTC
TCATCGGGTAAGGTCGAAAATTGGTCACACCAGCAAGGGTCAGACTTAAT
TCAGCTACTCAAGACTATTAATTTTCTACTATTGGACTATTTTAAAGTTA
ACTGTGATTATCGAAATTTAGCATTTAAAGGTTAAAATGGGTACTTTTCC
GACGTATTACTATTTTGAAGATCTTGAGAGATAATGGAAATACATTCTAT
TCTCGTTCACTAGGTAATTGGATTAGATCAAAACGGTTACGGTCGAATTC
TTGGTCAATGTCAACTTGGTGCCAAACTGTTCTACTGCATGTGGGAAACA
GTCGCCAGAGATGACGATCCTTTCATCTGTTGTAACTTCATTCCACTGGA
TTTGAAAGAATTACAAGAAAAAGGATTCGCATTCAAAACGCAACAAGATG
TCCATGACTACATCAAGAAACATATCATCGATAAACCTAATGAACAACTT
GTCAAGAATGTCCACAAAGAAATTGATTTCTTGGGAATCGTTGGTCCTGA
CGCCTTGATCAATTCGTTCACCGTCAACTGTAAGGATCAAAGCACTGGCA
AAGGTCAACAAAATATCGAGCTGGTCAACGATTTACAAAACCTCGTCTTC
AACGAATTGACTTGtaagtatttcaaaattttggtttttcttttttgagt
cTTGAGCTTGTCTTAAATTTCAGCACTATCACCATGCAATACTGTTTCCT
tggaatagacgatatcggctttccaaGATGCTTTGAATACTACGTctaaa
tagacgatatcggctttccgaatgattacccatgatgcattgcgtaaaaa
aattcacagacgatattgactttccgtgaattttttgcgcgatgcatcat
gggtaatcattcggaaagccgatatcgtctatttagACGTAGTATTCAAA
GCATCTTGGTATCGTTTCTTGGTATAGGTAGACCGAGACAAGAGTGAAAG
ACTTCAGAAGATAATTCGTAAAGTTGAATCCACTTTCTTTTTAGCGAGTG
TTGGCGAAGACACAAAACGTGTGAAGATGTTTTTGACAACCTCCAAACTG
GAATATGCAAATTATGGGAAATCTGTCCAACTATTGAAGGAAAGATTGAA
TTTACCGACAGAAAATACCCATGATGCACTTGGATTTTTGAGGAACACTT
GTATGGAACCGTATCAAGCAAGTGAAGCTTATGTGGAAGTTCTTGGTGAT
TTGTTCAGAAAGACTGTTCTTACTTGCATCGGTGCTGTAAGTATCGGATA
TTTGCATTCCTGTAATCTCTATCACAAAGCCGACACCCTTATTATACCTT
TCGCGACGAGAGTTCCAAGCTTTCGAaaaagataattaaaaaaaaaggaa
atctcacatcatctttttttttctcggaCCTTTGTCCTTTGTGATTAATC
GTGCTCAAAAATTAACATCCAACTTTTTCCCCCCAGCTGGACACATCATA
CGGAGAAGAATACGGAGATGCTTTGGATTATCAGACCTTCACTGTTGTCA
ACAATCTTCGAAAAGACGGAAAAATCTTCTTGGATTTCGTTCCCACTTTC
ACCAAGAAACAATCGCAATATCAAGCCGTCTTCAGAGTGAAAATCCTCCC
GGAAGACCAAGCAACATTTAGGTGGGTTTGAgtaaatcattttcaataaC
GTTTACAATCAACGCGCTTTATTTGCTAGCTTGATGTTATCTTATTCGTA
GCTTTTATGCTCAATTCGGTCTTGCCGGATTTACTAAAGGCCTTAAACTT
CTACAAAGCAGGAaactttttcgattttcatcttCTATTTTGTTAACAGG
GAGATTCAATCAAAAGCAACCGAACCACTCTTCATGAGAACAACTGAGAA
AGTCAACCTTTTCCATTTCGTCAAAAATGATTTGGCAACAAGAACCATGG
CTCTTTACCAAGGTAAATATcgagtgaaaaaaattcaactgatttttttc
ttcttgaaaaAAAGAATGTTGGTTCGTTTTTAATCTACCAGGAATGTTTT
GCTCGAGTTTTAGAAGCCAAAATTCCTTTTGACTGAATTTAATCTGAACT
TTTCATTCAGGAGCCAAGACTTCGAACACGTGTCTGGCAAGCATTCAATT
TCACATTGACGAAGTTTGGAGAATGGAACGTTTCGAATCACCACAATATG
CAGAATACAATaaacttcaaaaatatttcttatacgGAGATGAAGAAGAA
GCCTTCATGTCACATGTCGTCACCAAACAACCCNCAGAATACAATaaact
tcaaaaatatttcttatacgGAGATGAAGAAGAAGCCTTCATGTCGCATG
TCGTCACCAAGCAACCCGATTTTTACCAGGTAACACTGTCCCTTATATTT
CGTGTCTGTTTTCGAGCTAAAAATTCCTACTACCCTAAGAGAagaaaatt
ttggcgaatgagctCGCTCGCCAATTTTGGTGCAATCTGAcggaatttgt
tttgtttatttaataaaatttctaaatttgagaattaattttgacGAACG
AaccatttttgttcaatattttaactTCCTTTCGAAAGTTACCAAGAACT
GTTCATAATTAATCATTGCAAGTAAAATTGGTCTATGAGTATGGTATAGT
AATCATGTCTTTCTATTTTCCTTTGCAGGTCGTGCGTCTAGGTGAATTGC
CACATTCAGTGGAACCTCAATTATTGAACCTTGGTTTGATGGTTGAATTA
CCAGCTATTCCTGGAACTCCATTGACCGTAGATGGTAAAATCATCGACCC
TCTTCAAACTACTCGATATGGTGGCAACTACAGAGGTCGGCAATTTGCAG
AATGCACAACTTCACTTTTGGTTGGTGGTGAGAATTGCAAAGTGTATTTC
GATTCTGAATATTTGAACACACCTGTCACTGGAACTGATTGCTCATTGGT
TTGAATCCGTACCATATCACAAACAATTAAATAATAATCTCAGTATATAA
AAACCACTTTCTGTTaaattaaatgtttataaaaaattgtaaaaacgaaa
aaaaatattcaagttaactacaaagttcaaattttttcataccTTCTCT

Coding sequence (CDS) from alignment at scaffold_60:858079..865127+

>TCONS_00071260 ID=TCONS_00071260|Name=TCONS_00071260|organism=Clytia hemisphaerica|type=CDS|length=3036bp|location=Sequence derived from alignment at scaffold_60:858079..865127+ (Clytia hemisphaerica)
ATGGCTCAATCAATTCCATCAAATCCTGCTGGAGACAAATACGACCACCA
ATGGGAAGCTTTAGCTGGATGGTTTCTCGGGCCACGTGCAGAAAACCGaa
acattttcaatgatttGATGTTGAAAGCTTTGAATTGGCATGAAGATCGA
CGTGAGGAATTCTTTCCAGCCGATCCTTCTTATTTCACGGAGGAGATCAA
AAATTCCGACGCTGCTCAACATGAGTATAAAGATATGGAAAAGCAAATGA
AAGAAATGCATCGAGAATTGAACAAATCCATTCCTTTCTTTAGCACCAGA
TACCAgGGTCACATGACATGGGACGTGACAATGCCGTCGTTCTTGGGATA
CGTTTCCGGATTGCTTTGGAATCAAAACAACGTCGATTCAACTGCTTCAC
CAGTCACAACCAAGTTTGAAGTGGAAGTTGGTCAACAACTTTGCAAATTG
ATGCGATTTGACGACACCAAAGTCACACCATGGGGTCATTTGACAGGATG
TGGATCAGTCGCTAATATTGAATCAATGTGGGCTGCAAGGAACACCAAAT
TACATCCATTGGCTTTGAAAGACTCTTGTGCTGACCCTGATTTCCCCGAA
TTAATCGACGGTTTGGAGTGCAAGGTATTTGTCCCTGgtcaacaaaaaga
aaagactttgaaagaatGCACCGAATGGGAATTACTGAATTTGAGAATCG
ATGATATTTGTTCTTTGACTGATGACGTTATCAAGTGTATCGAGGAGAGA
AATCCGGatttcaaaattgacgtcaaagcaACGGTCGACAAAGCTTTGGA
GAGAAATTCACCAGTGCAACTTGGCTTACCAGAATTTTACCGACGACATA
AGATAGGTGAACCAAGCGCAAAAGATGCATCAGTGAGAACATATCCAAGA
GTCTTTTCACCAGGAACAAATCATTATTCATGGCCGAAAGCATCCACCAT
TCTTGGCATCGGTGATTCTAATAACATTCACATTCAAGTTGACAGCAAAG
CTCGTCAAGATATTGAGACTCTGGAGAAAGAATTGGATTATGCATTGGAA
CACCAGATTGCAGTGTTCATGGTAGTGGCAGTGATTGGTTCAACAGAAGA
AAGTGCTGTGGATGATATCGCAAGAATCTTGACTCTCAAACCAAAATATG
AAGCGAAGGGTTTGACATTTTCGGTGCACGCAGATGCAGCATGGGGTGGA
TATTTGAATTGTATGACCCACGAAACTGGTGACAAAGAAAGTAACGTTTA
TTCCAATTGTCTTCCAACAAAAGCTCATGATTTCGTTCCTGCTATTCCAC
TTTCCGATTTCGTCAAGAAACAATATGTCAGTTTGCAGTACGCTGATACA
GTGACCATCGATCCACACAAGTCTGGATTTTGTCCTTACCCTGCCGGTGC
TCTTCTCTATCGAAACGGAACAATGAAAGGTTTCATCACACTTGCTGCAC
CAGAAGTTTTCCACAGTCCTGATGATTTGAACGTTGGAATTTATGGTTTA
GAAGGATCGAAACCTGGAGCTGCAGCTTGTGGTGTTCTCTTGTCTCATCG
GGTAATTGGATTAGATCAAAACGGTTACGGTCGAATTCTTGGTCAATGTC
AACTTGGTGCCAAACTGTTCTACTGCATGTGGGAAACAGTCGCCAGAGAT
GACGATCCTTTCATCTGTTGTAACTTCATTCCACTGGATTTGAAAGAATT
ACAAGAAAAAGGATTCGCATTCAAAACGCAACAAGATGTCCATGACTACA
TCAAGAAACATATCATCGATAAACCTAATGAACAACTTGTCAAGAATGTC
CACAAAGAAATTGATTTCTTGGGAATCGTTGGTCCTGACGCCTTGATCAA
TTCGTTCACCGTCAACTGTAAGGATCAAAGCACTGGCAAAGGTCAACAAA
ATATCGAGCTGGTCAACGATTTACAAAACCTCGTCTTCAACGAATTGACT
TCGAGTGTTGGCGAAGACACAAAACGTGTGAAGATGTTTTTGACAACCTC
CAAACTGGAATATGCAAATTATGGGAAATCTGTCCAACTATTGAAGGAAA
GATTGAATTTACCGACAGAAAATACCCATGATGCACTTGGATTTTTGAGG
AACACTTGTATGGAACCGTATCAAGCAAGTGAAGCTTATGTGGAAGTTCT
TGGTGATTTGTTCAGAAAGACTGTTCTTACTTGCATCGGTGCTCTGGACA
CATCATACGGAGAAGAATACGGAGATGCTTTGGATTATCAGACCTTCACT
GTTGTCAACAATCTTCGAAAAGACGGAAAAATCTTCTTGGATTTCGTTCC
CACTTTCACCAAGAAACAATCGCAATATCAAGCCGTCTTCAGAGTGAAAA
TCCTCCCGGAAGACCAAGCAACATTTAGGGAGATTCAATCAAAAGCAACC
GAACCACTCTTCATGAGAACAACTGAGAAAGTCAACCTTTTCCATTTCGT
CAAAAATGATTTGGCAACAAGAACCATGGCTCTTTACCAAGGAGCCAAGA
CTTCGAACACGTGTCTGGCAAGCATTCAATTTCACATTGACGAAGTTTGG
AGAATGGAACGTTTCGAATCACCACAATATGCAGAATACAATaaacttca
aaaatatttcttatacgGAGATGAAGAAGAAGCCTTCATGTCACATGTCG
TCACCAAACAACCCNCAGAATACAATaaacttcaaaaatatttcttatac
gGAGATGAAGAAGAAGCCTTCATGTCGCATGTCGTCACCAAGCAACCCGA
TTTTTACCAGGTCGTGCGTCTAGGTGAATTGCCACATTCAGTGGAACCTC
AATTATTGAACCTTGGTTTGATGGTTGAATTACCAGCTATTCCTGGAACT
CCATTGACCGTAGATGGTAAAATCATCGACCCTCTTCAAACTACTCGATA
TGGTGGCAACTACAGAGGTCGGCAATTTGCAGAATGCACAACTTCACTTT
TGGTTGGTGGTGAGAATTGCAAAGTGTATTTCGATTCTGAATATTTGAAC
ACACCTGTCACTGGAACTGATTGCTCATTGGTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044293XLOC_044293Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071260-proteinTCONS_00071260-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071260-exon-scaffold_60-1491911889:858079..858204TCONS_00071260-exon-scaffold_60-1491911889:858079..858204Clytia hemisphaericaexon
TCONS_00071260-exon-scaffold_60-1510915933:858079..858204TCONS_00071260-exon-scaffold_60-1510915933:858079..858204Clytia hemisphaericaexon
TCONS_00071260-exon-scaffold_60-1575043694:858079..858204TCONS_00071260-exon-scaffold_60-1575043694:858079..858204Clytia hemisphaericaexon
TCONS_00071260-exon-scaffold_60-1491911889:858349..858631TCONS_00071260-exon-scaffold_60-1491911889:858349..858631Clytia hemisphaericaexon
TCONS_00071260-exon-scaffold_60-1510915933:858349..858631TCONS_00071260-exon-scaffold_60-1510915933:858349..858631Clytia hemisphaericaexon
TCONS_00071260-exon-scaffold_60-1575043694:858349..858631TCONS_00071260-exon-scaffold_60-1575043694:858349..858631Clytia hemisphaericaexon
TCONS_00071260-exon-scaffold_60-1491911889:858820..859066TCONS_00071260-exon-scaffold_60-1491911889:858820..859066Clytia hemisphaericaexon
TCONS_00071260-exon-scaffold_60-1510915933:858820..859066TCONS_00071260-exon-scaffold_60-1510915933:858820..859066Clytia hemisphaericaexon
TCONS_00071260-exon-scaffold_60-1575043694:858820..859066TCONS_00071260-exon-scaffold_60-1575043694:858820..859066Clytia hemisphaericaexon
TCONS_00071260-exon-scaffold_60-1491911889:859211..859264TCONS_00071260-exon-scaffold_60-1491911889:859211..859264Clytia hemisphaericaexon
TCONS_00071260-exon-scaffold_60-1510915933:859211..859264TCONS_00071260-exon-scaffold_60-1510915933:859211..859264Clytia hemisphaericaexon
TCONS_00071260-exon-scaffold_60-1575043694:859211..859264TCONS_00071260-exon-scaffold_60-1575043694:859211..859264Clytia hemisphaericaexon
TCONS_00071260-exon-scaffold_60-1491911889:859775..859968TCONS_00071260-exon-scaffold_60-1491911889:859775..859968Clytia hemisphaericaexon
TCONS_00071260-exon-scaffold_60-1510915933:859775..859968TCONS_00071260-exon-scaffold_60-1510915933:859775..859968Clytia hemisphaericaexon
TCONS_00071260-exon-scaffold_60-1575043694:859775..859968TCONS_00071260-exon-scaffold_60-1575043694:859775..859968Clytia hemisphaericaexon
TCONS_00071260-exon-scaffold_60-1491911889:860163..860379TCONS_00071260-exon-scaffold_60-1491911889:860163..860379Clytia hemisphaericaexon
TCONS_00071260-exon-scaffold_60-1510915933:860163..860379TCONS_00071260-exon-scaffold_60-1510915933:860163..860379Clytia hemisphaericaexon
TCONS_00071260-exon-scaffold_60-1575043694:860163..860379TCONS_00071260-exon-scaffold_60-1575043694:860163..860379Clytia hemisphaericaexon
TCONS_00071260-exon-scaffold_60-1491911889:860671..860810TCONS_00071260-exon-scaffold_60-1491911889:860671..860810Clytia hemisphaericaexon
TCONS_00071260-exon-scaffold_60-1510915933:860671..860810TCONS_00071260-exon-scaffold_60-1510915933:860671..860810Clytia hemisphaericaexon
TCONS_00071260-exon-scaffold_60-1575043694:860671..860810TCONS_00071260-exon-scaffold_60-1575043694:860671..860810Clytia hemisphaericaexon
TCONS_00071260-exon-scaffold_60-1491911889:861363..861555TCONS_00071260-exon-scaffold_60-1491911889:861363..861555Clytia hemisphaericaexon
TCONS_00071260-exon-scaffold_60-1510915933:861363..861555TCONS_00071260-exon-scaffold_60-1510915933:861363..861555Clytia hemisphaericaexon
TCONS_00071260-exon-scaffold_60-1575043694:861363..861555TCONS_00071260-exon-scaffold_60-1575043694:861363..861555Clytia hemisphaericaexon
TCONS_00071260-exon-scaffold_60-1491911889:861886..862085TCONS_00071260-exon-scaffold_60-1491911889:861886..862085Clytia hemisphaericaexon
TCONS_00071260-exon-scaffold_60-1510915933:861886..862085TCONS_00071260-exon-scaffold_60-1510915933:861886..862085Clytia hemisphaericaexon
TCONS_00071260-exon-scaffold_60-1575043694:861886..862085TCONS_00071260-exon-scaffold_60-1575043694:861886..862085Clytia hemisphaericaexon
TCONS_00071260-exon-scaffold_60-1491911889:862292..862691TCONS_00071260-exon-scaffold_60-1491911889:862292..862691Clytia hemisphaericaexon
TCONS_00071260-exon-scaffold_60-1510915933:862292..862691TCONS_00071260-exon-scaffold_60-1510915933:862292..862691Clytia hemisphaericaexon
TCONS_00071260-exon-scaffold_60-1575043694:862292..862691TCONS_00071260-exon-scaffold_60-1575043694:862292..862691Clytia hemisphaericaexon
TCONS_00071260-exon-scaffold_60-1491911889:863073..863314TCONS_00071260-exon-scaffold_60-1491911889:863073..863314Clytia hemisphaericaexon
TCONS_00071260-exon-scaffold_60-1510915933:863073..863314TCONS_00071260-exon-scaffold_60-1510915933:863073..863314Clytia hemisphaericaexon
TCONS_00071260-exon-scaffold_60-1575043694:863073..863314TCONS_00071260-exon-scaffold_60-1575043694:863073..863314Clytia hemisphaericaexon
TCONS_00071260-exon-scaffold_60-1491911889:863515..863699TCONS_00071260-exon-scaffold_60-1491911889:863515..863699Clytia hemisphaericaexon
TCONS_00071260-exon-scaffold_60-1510915933:863515..863699TCONS_00071260-exon-scaffold_60-1510915933:863515..863699Clytia hemisphaericaexon
TCONS_00071260-exon-scaffold_60-1575043694:863515..863699TCONS_00071260-exon-scaffold_60-1575043694:863515..863699Clytia hemisphaericaexon
TCONS_00071260-exon-scaffold_60-1491911889:863878..863990TCONS_00071260-exon-scaffold_60-1491911889:863878..863990Clytia hemisphaericaexon
TCONS_00071260-exon-scaffold_60-1510915933:863878..863990TCONS_00071260-exon-scaffold_60-1510915933:863878..863990Clytia hemisphaericaexon
TCONS_00071260-exon-scaffold_60-1575043694:863878..863990TCONS_00071260-exon-scaffold_60-1575043694:863878..863990Clytia hemisphaericaexon
TCONS_00071260-exon-scaffold_60-1491911889:864139..864407TCONS_00071260-exon-scaffold_60-1491911889:864139..864407Clytia hemisphaericaexon
TCONS_00071260-exon-scaffold_60-1510915933:864139..864407TCONS_00071260-exon-scaffold_60-1510915933:864139..864407Clytia hemisphaericaexon
TCONS_00071260-exon-scaffold_60-1575043694:864139..864407TCONS_00071260-exon-scaffold_60-1575043694:864139..864407Clytia hemisphaericaexon
TCONS_00071260-exon-scaffold_60-1491911889:864707..865127TCONS_00071260-exon-scaffold_60-1491911889:864707..865127Clytia hemisphaericaexon
TCONS_00071260-exon-scaffold_60-1510915933:864707..865127TCONS_00071260-exon-scaffold_60-1510915933:864707..865127Clytia hemisphaericaexon
TCONS_00071260-exon-scaffold_60-1575043694:864707..865127TCONS_00071260-exon-scaffold_60-1575043694:864707..865127Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:858079..865127 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
947.027	924.941	668.811	576.334	0.947254	0.720953	0.227161	0.332439	0.246834	0.559962	0.263883	0.226047	0.151094	0.175587	0.131794	0.188825	0.128603	0.193336	0.571873	0.690215	1.40699	1.27044	450.198	353.232	0.392546	0.15295	19.3251	18.2394	280.197	327.083
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002129PyrdxlP-dep_de-COase
IPR015421PyrdxlP-dep_Trfase_major_sub1
IPR015424PyrdxlP-dep_Trfase
Vocabulary: Molecular Function
TermDefinition
GO:0016831carboxy-lyase activity
GO:0030170pyridoxal phosphate binding
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0019752carboxylic acid metabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019752 carboxylic acid metabolic process
molecular_function GO:0016831 carboxy-lyase activity
molecular_function GO:0003824 catalytic activity
molecular_function GO:0030170 pyridoxal phosphate binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071260 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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