TCONS_00071263 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071263
Unique NameTCONS_00071263
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1989

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071263 ID=TCONS_00071263|Name=TCONS_00071263|organism=Clytia hemisphaerica|type=transcript|length=1989bp
GATGCGTCCACATCAACAGATACGGTGCTTCGTATTGAGAACTTTGGAGA
TCTTCTTGCGCAAGATTTTATTCGCAAAGCAACCAATGCTGTCTGCAAAT
CCGCCAACAGTAAATCATGTGCGACTTCTATGGACATTGGTTTCATTTTG
GATTCGTCTGGTAGTTTAAGAAACCAATATCCACAAATCAAAGGTTTTAT
CCAAGATTTCGCCAACAATCTCGATATCTCAAAAGATGGAGTACATGTGG
GTGTGGTCACTTTCAGTTTCTATGCATCTCTCAGCATCAAATTCTCTGAT
TACGTTGATAAAACAGCCTTTAAGACTGCAGTTGGTAATATCCCTTTAAT
GGGTTCAACCACACGTATTGATAAAGCATTGAAGATATCAAAAGATGAGT
TATTCAGCACATCAAACGGTGCTCGTAAAGATGTTCCAAAGATCTTGATT
CTACTCACAGATGGTTCACAAACACAAGATCGAGATGCTGTAGACCCTGG
TAAAGTTGCCAAGACATTGCGAGAAAATGACATCACCATTGTTTCTATTG
GTATTGGTAAAGGTGTCAACGTTGATGAATTGGAACACATTGCCGGTGAT
CGATCAAGGGTGTACCAAGCTGATGATTTTGATAAATTGATCGAAGGTGG
ATTTATCAATAACATCCTTCAAAAGTCTTGCGAAACAGctaaattcaaag
aaaatcgTTTCAATACAGTCAGTGATATCACATTCATGCTTGACGGTTCA
TCTAGCGCCGCTTCTGCATTTGGATCATTGAAAGATTTCATCATTTACAT
TATGTCTCGGTTCACACAATATGCTCATTTTGGTGTTTTACTTGGTGGTG
ATTCATCCCAGTTTTCTATCAAACACAGTAGTTCCCAATCGATTGAGAAC
CTTAGAGCTCAGATGGCCAATATAAACCTTGCCGGTGGTGACCGTATGAA
TCTTGACAACTCCCTGCAACAAGCTCTTACGGAGATGCAAGATCAGAGTT
CAGGCATGCGCCAAGGAGTACCcaaaatgtttgttttgttaACTACTTCA
CACCAAAAACCGACTGGTAAAGAATTGgataaaattaaacaaattcAAGA
ATTAGGTGGTATGTTCATCATTGTTGCTGTTGGAACGATCAATTATGATC
CTTCCTTCTTGTTCTCTATACCACGTGAGCAGAAGAACGTGCATTTGCTA
CCAGGACAAAGTGGCTTGAATAACgcttttgctgacgtcatcagtaAACA
AATTTCATCATCCGCAGAGAACATCAAACAAGACGCTGTTATTGATCTTG
GTTTCATAATTGATTCATCTGCCAGTTTCAAAGATTACTACGACCTTGAG
AAAGACTTTATAAAAAGAATCGGAAGTCGATTCAATCTGGACCAGTATAA
GACGAGAACCTCCGTCATGACATATTCCAACTATATCAATATGATTTCCA
AATTTGCTGACTTTCATGGACAAAAGAGTTTTGAAAGTGCAATTGATAAT
GCTGCTTTCTCTGGCTCAACTTCAAGGATAGACAAAGCACTTGCTGAAGC
AAACGATAATATGTTTTCAGTGAAGAGTGGAGGGCGAGCTGGAGTGAAGC
AAGTCTTGGTCATCGTCACCGACGGTGTTTCATCTGCTTCTGGTGTTGAT
CCTTTTGCGATTGCCAAGAAAATCAAGAATCAGAATATTCATGTCATCGT
TGTAGCTGTTGGAGATGCCATCAAAGCCAACTCCTTAGATGCTCTTGGTG
ATCAGGTGTTTTATGTCAACGATTACTCTGATTTGGGTTCACTGGACACT
TCAGCCAAAGTCTTGGATTCGGTTACCACAGAAGCTGACAAAAATGTCGA
AGCACTTTGCCAACAAGAAGTCGACGTTGGTTTTATTCTGGATTCATCTG
GCAGCTTACGAAATGAGTACACGAAAGAAAAGGATTTCCTCAAAGCCATG
GCTGCTCAGTTTGATATTGGAAAATCAGCTCAAGTTGGT
Run BLAST on NCBI

protein sequence of TCONS_00071263-protein

>TCONS_00071263-protein ID=TCONS_00071263-protein|Name=TCONS_00071263-protein|organism=Clytia hemisphaerica|type=polypeptide|length=663bp
DASTSTDTVLRIENFGDLLAQDFIRKATNAVCKSANSKSCATSMDIGFIL
DSSGSLRNQYPQIKGFIQDFANNLDISKDGVHVGVVTFSFYASLSIKFSD
YVDKTAFKTAVGNIPLMGSTTRIDKALKISKDELFSTSNGARKDVPKILI
LLTDGSQTQDRDAVDPGKVAKTLRENDITIVSIGIGKGVNVDELEHIAGD
RSRVYQADDFDKLIEGGFINNILQKSCETAKFKENRFNTVSDITFMLDGS
SSAASAFGSLKDFIIYIMSRFTQYAHFGVLLGGDSSQFSIKHSSSQSIEN
LRAQMANINLAGGDRMNLDNSLQQALTEMQDQSSGMRQGVPKMFVLLTTS
HQKPTGKELDKIKQIQELGGMFIIVAVGTINYDPSFLFSIPREQKNVHLL
PGQSGLNNAFADVISKQISSSAENIKQDAVIDLGFIIDSSASFKDYYDLE
KDFIKRIGSRFNLDQYKTRTSVMTYSNYINMISKFADFHGQKSFESAIDN
AAFSGSTSRIDKALAEANDNMFSVKSGGRAGVKQVLVIVTDGVSSASGVD
PFAIAKKIKNQNIHVIVVAVGDAIKANSLDALGDQVFYVNDYSDLGSLDT
SAKVLDSVTTEADKNVEALCQQEVDVGFILDSSGSLRNEYTKEKDFLKAM
AAQFDIGKSAQVG
Run BLAST on NCBI

transcript from alignment at scaffold_60:914990..922817+

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071263 ID=TCONS_00071263|Name=TCONS_00071263|organism=Clytia hemisphaerica|type=transcript|length=7828bp|location=Sequence derived from alignment at scaffold_60:914990..922817+ (Clytia hemisphaerica)
GATGCGTCCACATCAACAGATACGGTGCTTCGTATTGAGAACTTTGGAGA
TCTTCTTGCGCAAGATTTTATTCGCAAAGCAACCAATGCTGTCTGCAAAT
CCGCCAACAGTAAGTCtttgttttcactttttagAACAAAGGCTTGATAG
AAACTATGAATAAAAAACAACTTCGCTCTTCCTGAGAAATGCAACACAAG
GTGTTTTCAGTACCTACATCCTGTATAATATACAGGATGATTCAAACATT
TTGTGGCGATAGGATGACCAGAAAAAAGTTCTGTCGAAAAGTAATAAGGA
GCGTggatttttttattatcaaactTTGGAATTAGAATACAGTCAAAATG
TTAGCGATCTAAATATCGTTTTTCTTATGAATGACAGTGGCATATTCAGA
gggcttatttttttcatatgaGATTACCTTTTATCATTTGAAGATAATAA
ACGGAAAAAATCGAGCTCCTAGCATGTTATCTCTTCCAATCTAGAGGGGA
AGGTATGGCTATCTCAAAGCAGCATGGTTCATTTTATCATATCATTTTTC
TTTAGGTAAATCATGTGCGACTTCTATGGACATTGGTTTCATTTTGGATT
CGTCTGGTAGTTTAAGAAACCAATATCCACAAATCAAAGGTTTTATCCAA
GATTTCGCCAACAATCTCGATATCTCAAAAGATGGAGTACATGTGGGTGT
GGTCACTTTCAGTTTCTATGCATCTCTCAGCATCAAATTCTCTGATTACG
TTGATAAAACAGCCTTTAAGACTGCAGTTGGTAATATCCCTTTAATGGGT
TCAACCACACGTATTGATAAAGCATTGAAGATATCAAAAGATGAGTTATT
CAGCACATCAAACGGTGCTCGTAAAGATGTTCCAAAGATCTTGATTCTAC
TCACAGATGGTTCACAAACACAAGATCGAGATGCTGTAGACCCTGGTAAA
GTTGCCAAGACATTGCGAGAAAATGACATCACCATTGTTTCTATTGGTAT
TGGTAAAGGTGTCAACGTTGATGAATTGGAACACATTGCCGGTGATCGAT
CAAGGGTGTACCAAGCTGATGATTTTGATAAATTGATCGAAGGTGGATTT
ATCAATAACATCCTTCAAAAGTCTTGCGAAACAGGTAATACTAATTTCTT
AACAATGAATGGTAAAAAATAAACGTTTTGTCACGTATCACTTGAATAAT
TAGTAGAATACTCGATCTTNCAAAAATAAACGTCTTGTCACGTATCACTT
GAATAATTAGTAGAATACtcgatcttttttttttgcactccgCAGGTCTT
TGAGACTGAGATTGTTATCGAGAAAAGGTGGAAGAATCTGACATTGCCAT
TCTTAGAATTTTAtcgattttattgaattttacttAGAATTCAACTGATT
AAGAATAATCTCAATCCTTCTACTTATAGctaaattcaaagaaaatcgTT
TCAATACAGTCAGTGATATCACATTCATGCTTGACGGTTCATCTAGCGCC
GCTTCTGCATTTGGATCATTGAAAGATTTCATCATTTACATTATGTCTCG
GTTCACACAATATGCTCATTTTGGTGTTTTACTTGGTGGTGATTCATCCC
AGTTTTCTATCAAACACAGTAGTTCCCAATCGATTGAGAACCTTAGAGCT
CAGATGGCCAATATAAACCTTGCCGGTGGTGACCGTATGAATCTTGACAA
CTCCCTGCAACAAGCTCTTACGGAGATGCAAGATCAGAGTTCAGGCATGC
GCCAAGGAGTACCcaaaatgtttgttttgttaACTACTTCACACCAAAAA
CCGACTGGTAAAGAATTGgataaaattaaacaaattcAAGAATTAGGTAA
TATAACTCATTCCTTAAAGTTATTATTTGTCGACCACTACACCCATGCAA
CAATACTTGGAGTGTCTTCGAGAAGAAATATCTTTTCTAATTATGGAAGC
TatgaaattttcgattttcgaaatatttatGTTTGATAAAAGGTTACCGG
TTACCGTTTAATAAAATAGCATTTACAATAGCAGTTTTATGATACGTCGA
GTTACCTTAAAACCATGATCTTTCCACTGCTATTTGATACTTTACTCGTC
TACAAATCTAAGCTAGCTTGATTTCGTTACTAATGGTTGGTTGTGACTGA
ATTTTAATATAAATCCAAGCCAAACTTCAAAAAGTCAtcgaaaattgcaa
aattacTGTCAGCCTTCATTGTGACTGACTTCTTTTAACTATTTCTACAC
TTCaaggttttttaattttaaaataagagtgatatcgtttgcttattcat
caattttaatttacaagctttttgatattgacacggatgtggagcaagat
tggtcagaataAGGAAAAGTAGCACAGTTTAACAATatgcagacactgtc
ctgatatgaaacatgtatctgatatgaaacgggagcacttctgtaaaaaa
aaacctttaacgtCTCCTTTTGATTTTCAGGTGGTATGTTCATCATTGTT
GCTGTTGGAACGATCAATTATGATCCTTCCTTCTTGTTCTCTATACCACG
TGAGCAGAAGAACGTGCATTTGCTACCAGGACAAAGTGGCTTGAATAACg
cttttgctgacgtcatcagtaAACAAATTTCATCATCCGCAGGTAATTTA
TTCGTCGTATACTAACTGTAATCTCACAACATTCTATTTCTATAAAACAG
CAAGTATTGAAACAGAAAATATTGGATTTAAGATTTATATTGCCTACATA
GCaaagtaaaaatatattttcataaaagatgtcataCATAAACTCTGACT
TGTTTTGAAACGGTTACCAAGTTTCTCCCTTGAATCGTCTAATATTCTTC
ATTGAAAATGCACATCTAAGGGAAAGGGCAATACAGTATAGAACCTTCAA
TTCGTAGAAAGTTCTGAAACTGTTTTTATCTCTTTTCCAGAGAACATCAA
ACAAGACGCTGTTATTGATCTTGGTTTCATAATTGATTCATCTGCCAGTT
TCAAAGATTACTACGACCTTGAGAAAGACTTTATAAAAAGAATCGGAAGT
CGATTCAATCTGGACCAGTATAAGACGAGAACCTCCGTCATGACATATTC
CAACTATATCAATATGATTTCCAAATTTGCTGACTTTCATGGACAAAAGA
GTTTTGAAAGTGCAATTGATAATGCTGCTTTCTCTGGCTCAACTTCAAGG
ATAGACAAAGCACTTGCTGAAGCAAACGATAATATGTTTTCAGTGAAGAG
TGGAGGGCGAGCTGGAGTGAAGCAAGTCTTGGTCATCGTCACCGACGGTG
TTTCATCTGCTTCTGGTGTTGATCCTTTTGCGATTGCCAAGAAAATCAAG
AATCAGAATATTCATGTCATCGTTGTAGCTGTTGGAGATGCCATCAAAGC
CAACTCCTTAGATGCTCTTGGTGATCAGGTGTTTTACATGAACGATTATG
CCGATCTTGGGTCGCTTGATTTTTCAACCAATATAATGAATTCAGTGTCT
GACCTTGGTATgtattttgtttatttggtTCAGCTCTCAAATGGGAGGAG
GATtctgaaattcgaaaaaaatgtaCTGCATTGTATGCTCACTAAACAAC
ATCGATGATACCTTTCATCGAAAGAGCATCGAAAAAGGGGTTTTAGTTAA
TTCTTAAATCATTTCTAATATTCAACTGCGACAAGGATTTCTACCATTGA
CAGTTTAAATAtttaaacttctttttttcagccaaaGAGAATGTCGAAGC
ACTTTGCCAACAAGAAGTCGACGTTGGTTTCATTCTGGATTCATCTGGCA
GCTTACGAAATGAGTACACGAAAGAAAAGGATTTCCTCAAAGCCATGGCT
GCTCAGTTTGATATTGGAAAATCAGCTCAAGTTGGTGTCATTACATTTAG
TTACTACACAGAATTGAGCATCAAAATGAATCAATATAATGATATCAATG
ATTTAAGTAAAGCTGTAGATGACATCCCTCTAATGGGATCAACCACAAGA
ATTGACAAAGCTTTAAGACAAGCACAAAGTGATATGTTTGCCATTAAAAA
CGGCGGTCGCTTTGGTGTAAACAAAGTTCTTATCCTCCTGACAGACGGTT
CACAAACACAAGATGTAGGAGCTGAAGATCCAGCAGTCATTGCTGGTGAA
ATCCGAAAACAAGGAATCAATATGATGACTGTGGGAATTGGTCCTGGAGT
CAACAGTACAGAACTTGCTCGCATCGCTGGTGGAAAGAAGAACATGTATC
AAGCTGAAAGTTTTAATGTGTTGATTGGAAAACCATTTTTGGAAAGTGTC
ACTAAAGCTGGATGTGAAAAAGGTATATTACCTGGCCTCTGATTCAATCC
TGCATTGTTTCGAATAATTTCCTCTGCACATAATGAACAATGTTGAGCTA
AGTGTTTGTCATCCACTAAACACTTTTATtacattgggctattccaggaA
TATTCTGTTCCTGTATGTTGAGGAGGCGTGACGTCCAGGTTGGTCTGGAA
AACGGGGTCAAAGATCCAGGGGGgtcctgaaaattgaaaaaaaaatccaa
gggggtctcacttttcccaaaaaagacctCCTACATAGGgagtaaaatct
ttttctggaataACCCATTTTGATTGTTATTAACTAGAATATCTCCTTTT
TTCTCACTCCAGCCAAAGAAGTACTTCCACCAGAACCAACATGCAGAGCC
AAAGTGGACGTTGGTTTCGTACTCGACTCTTCTGGCAGTTTGAGAAATGA
CTACGACAAGGAAAAAGACTTCTTGAAGGCTCTGGCCGCTACTTTCGGTG
TCAGTGATGATGGTGCCAGGGCAGGAGTTGTAACGTTCAGTTACTACAGC
GAGCACAGCATCAAATTGAACGACCACACTGAACTTAGCACTTTTAACGA
CGCTGTTGACAAGATTTCACTGATGGGTTCAACAACAAGGATTGACAAGG
CTCTGCGCATGGTGCAAAATGACATGTTTACAATCGCGAATGGAGCCCGA
CCAGGTGTCAACAAAGTTCTGATTGTACTGACAGACGGCTCACAGACACA
AGACGCTGGTGCCGAAGACCCTGGGGATGTGGCTAAAGAACTTCGAGACA
AGGGCATCAGAGTGATATCTATCGGTATCGGAAAAGGCGTCAACCCTGCA
GAATTGGCTCGCATCGCTGGAGACCAGTCGAACGTTTTCTCTGCTTCGTC
TTTTGAAGAACTGGTCACTGGTGACTTTGTAAGCAAGATTGCCGAGGTTG
GATGTGAACAAGGTGAGATAAACAAATTTCCCCAAATATTTTCCACATGA
ATTGGTGTTTGCTCTTTTCGAAAACCAATTTATATTGTTCATATGTTTCA
TTATTTAGAAATGGGCTTCACAACATGTTCTCTTAACTGGAAGATTCAAT
ACTCCAAATTCCTCTCTTTGAAgcagtttttgagtttttgtaCTAAAATC
GATTTGAAGATCGATAAAGTTAAATAGAGATTCTATACAATCTTTTCCTT
TTCTCAAACAAATGTATCCTCTATTAGAATTGTTCCTGATTCATAACTCG
TGAAAAACTCTTGAAACATTTATGACAACAActtgacttttctatatttc
agcGAAATTTGTTGACGATCGTCTTGACGCCTTGGCTGATGTCACATTCC
TCTTAGACGGATCATCTAGCGCCGCATCTTCATTTGGATCATTGAAAGAT
TTCATCAGCTTTATCTTGTCTCGATTCCGATACTTCGCTCGGTTCGGAGT
AATCATAGGTGGTGATTCTGCTCAATACAAAATACCACATAATAATGGAC
AATCTTTGGACTCGTTGAAGCAATTGATCACTAACTTGAAACTGCAACCT
GGAAATCGATTGAATCTTGACAAATCTTTGGAACAAGCTCTAAATGAAAT
GCAAGGTTCAAGCATGCGTAATGGAGTACCTAAAGTCTTTGTTTTATTAA
CAACTTCAAATCAAAAGCCAACGGGTCAAGAACTTGAGAAGATTAAACAG
ATCAGAGCTTTAGGTAAACGAAAATTTTGTGGCTGCTTTTTTGACGCCTT
TGTCTAACTTAAGTTGTCCTGATTTCGAGACTTCATCGACGAACTTTAAT
TTTCAGACAAAGGAACATGCTCAAAATCAGAGACCAAAGATAGCCTATAC
AGTCTCTGaaatttatatttcttttgatttttcaggaGAAGAATATAATT
TCAACGTAGGAACCGTATAAGAACCCTTCCTTTCCAGTTTTCaaactctt
ttgaaaatgataaGGCTAAAAATTCAGTTTGCTCGCTCAAATATCCTTTT
AACATTCTACTATCCCCTTTGTATCGCAGGTGGTCGGGTTATCATCATTG
CTGTCGGTGATCAAGGAGGTTACGATTGGTCGTTCCTTTCCAATCTCCCG
TACGATCAACAATATGCGCATACCATTGCTGACAGCACTGGTTTGGATGA
TGCATTTGGTAGAACTATCagtaaacaaatcaaaatggctGCAGGTACAT
TTTAATCCTTCTGGCATTAATGCTCNGATGCATTTGGTAGAACTATCagt
aaacaaatcaaaatggctGCAGGTACATTTTAATCCTTCTGGCATTAATG
CTCTTTTGTTTTTTACATCAATTGAgtttaaaaaagcaacataTAAATCC
CAATGAATCAAAGGTTCATTATTGGATCAATTTGTGTTCTTGAAGGTTTT
ATAGGTTCTCGTGAAAGCAATGTTCCCTATTTGCTATCACGTCATAAAGA
ATGCCTTTACCTAATGGCACGACTGAAATTTAGTTGACTTACCATTTTTT
GTTTCAGACGATGCCAGGCGAGATGCCTATATGGATCTTGGCTTCATTAT
TGATTCGTCATTGAGTTTCAAAGACTACTTCAACCTAGAAAAAGACTTCA
TCAAAAGCATTGCTAGCCGTTTCAATCTTGGACAATATAAAACTAGAACA
TCATTGATGGCTTACTCAAACTACATCAACATGTTATCCAAATTCTCTGA
CTTCAACAGTGTTGAAGATTTCAAGAAAGCCATCGATTCTGCCAATTTTA
TGGGGTCAAATTCAAGGATAGACAAAGCACTTGCTGAAGCAAACGATAAT
ATGTTTTCAGTGAAGAGTGGAGGGCGAGCTGGAGTGAAGCAAGTTCTGGT
AATCGTCACCGACGGTGTTTCATCTGCTTCTGGTGTTGATCCTTTTGCGA
TTGCCAAGAAAATCAAGAATCAAAACATTCATGTCATCGTTGTAGCTGTT
GGAGATGCAATCAAAACCAATTCCTTAGATGCTCTTGGTGATCAGGTGTT
TTATGTCAACGATTACTCTGATTTGGGTTCACTGGACACTTCAGCCAAAG
TCTTGGATTCGGTTACCACAGAAGGTAGGACTCTTTTCTTTAGTTCATTt
ctgaaatattttgattttttaaacactttaCCAAGTTGTTTTAACTGGTG
AACATTTTTCACAGACGAAATTTGATTTATTCTCTTTTACATCGAAAATT
TTATAGAACATTTATAACGATGTATTGGCTAGCAGTAATTTCATTTGAGT
AAATTCCAAAAATCCTGATTCCATTATTAAATGTTTCCCTCTTCATCGTG
TATCAGTTAGATTCTGTTGGACATGGTCTCGGTTATTGTAAtctataaaa
atttaaaatcttaatTTCTATAGCTGACAAAAATGTCGAAGCACTTTGCC
AACAAGAAGTCGACGTTGGTTTTATTCTGGATTCATCTGGCAGCTTACGA
AATGAGTACACGAAAGAAAAGGATTTCCTCAAAGCCATGGCTGCTCAGTT
TGATATTGGAAAATCAGCTCAAGTTGGT

Coding sequence (CDS) from alignment at scaffold_60:914990..922817+

>TCONS_00071263 ID=TCONS_00071263|Name=TCONS_00071263|organism=Clytia hemisphaerica|type=CDS|length=1989bp|location=Sequence derived from alignment at scaffold_60:914990..922817+ (Clytia hemisphaerica)
GATGCGTCCACATCAACAGATACGGTGCTTCGTATTGAGAACTTTGGAGA
TCTTCTTGCGCAAGATTTTATTCGCAAAGCAACCAATGCTGTCTGCAAAT
CCGCCAACAGTAAATCATGTGCGACTTCTATGGACATTGGTTTCATTTTG
GATTCGTCTGGTAGTTTAAGAAACCAATATCCACAAATCAAAGGTTTTAT
CCAAGATTTCGCCAACAATCTCGATATCTCAAAAGATGGAGTACATGTGG
GTGTGGTCACTTTCAGTTTCTATGCATCTCTCAGCATCAAATTCTCTGAT
TACGTTGATAAAACAGCCTTTAAGACTGCAGTTGGTAATATCCCTTTAAT
GGGTTCAACCACACGTATTGATAAAGCATTGAAGATATCAAAAGATGAGT
TATTCAGCACATCAAACGGTGCTCGTAAAGATGTTCCAAAGATCTTGATT
CTACTCACAGATGGTTCACAAACACAAGATCGAGATGCTGTAGACCCTGG
TAAAGTTGCCAAGACATTGCGAGAAAATGACATCACCATTGTTTCTATTG
GTATTGGTAAAGGTGTCAACGTTGATGAATTGGAACACATTGCCGGTGAT
CGATCAAGGGTGTACCAAGCTGATGATTTTGATAAATTGATCGAAGGTGG
ATTTATCAATAACATCCTTCAAAAGTCTTGCGAAACAGctaaattcaaag
aaaatcgTTTCAATACAGTCAGTGATATCACATTCATGCTTGACGGTTCA
TCTAGCGCCGCTTCTGCATTTGGATCATTGAAAGATTTCATCATTTACAT
TATGTCTCGGTTCACACAATATGCTCATTTTGGTGTTTTACTTGGTGGTG
ATTCATCCCAGTTTTCTATCAAACACAGTAGTTCCCAATCGATTGAGAAC
CTTAGAGCTCAGATGGCCAATATAAACCTTGCCGGTGGTGACCGTATGAA
TCTTGACAACTCCCTGCAACAAGCTCTTACGGAGATGCAAGATCAGAGTT
CAGGCATGCGCCAAGGAGTACCcaaaatgtttgttttgttaACTACTTCA
CACCAAAAACCGACTGGTAAAGAATTGgataaaattaaacaaattcAAGA
ATTAGGTGGTATGTTCATCATTGTTGCTGTTGGAACGATCAATTATGATC
CTTCCTTCTTGTTCTCTATACCACGTGAGCAGAAGAACGTGCATTTGCTA
CCAGGACAAAGTGGCTTGAATAACgcttttgctgacgtcatcagtaAACA
AATTTCATCATCCGCAGAGAACATCAAACAAGACGCTGTTATTGATCTTG
GTTTCATAATTGATTCATCTGCCAGTTTCAAAGATTACTACGACCTTGAG
AAAGACTTTATAAAAAGAATCGGAAGTCGATTCAATCTGGACCAGTATAA
GACGAGAACCTCCGTCATGACATATTCCAACTATATCAATATGATTTCCA
AATTTGCTGACTTTCATGGACAAAAGAGTTTTGAAAGTGCAATTGATAAT
GCTGCTTTCTCTGGCTCAACTTCAAGGATAGACAAAGCACTTGCTGAAGC
AAACGATAATATGTTTTCAGTGAAGAGTGGAGGGCGAGCTGGAGTGAAGC
AAGTCTTGGTCATCGTCACCGACGGTGTTTCATCTGCTTCTGGTGTTGAT
CCTTTTGCGATTGCCAAGAAAATCAAGAATCAGAATATTCATGTCATCGT
TGTAGCTGTTGGAGATGCCATCAAAGCCAACTCCTTAGATGCTCTTGGTG
ATCAGGTGTTTTATGTCAACGATTACTCTGATTTGGGTTCACTGGACACT
TCAGCCAAAGTCTTGGATTCGGTTACCACAGAAGCTGACAAAAATGTCGA
AGCACTTTGCCAACAAGAAGTCGACGTTGGTTTTATTCTGGATTCATCTG
GCAGCTTACGAAATGAGTACACGAAAGAAAAGGATTTCCTCAAAGCCATG
GCTGCTCAGTTTGATATTGGAAAATCAGCTCAAGTTGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044296XLOC_044296Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071263-exon-scaffold_60-1491911889:914990..915098TCONS_00071263-exon-scaffold_60-1491911889:914990..915098Clytia hemisphaericaexon
TCONS_00071263-exon-scaffold_60-1510915933:914990..915098TCONS_00071263-exon-scaffold_60-1510915933:914990..915098Clytia hemisphaericaexon
TCONS_00071263-exon-scaffold_60-1575043694:914990..915098TCONS_00071263-exon-scaffold_60-1575043694:914990..915098Clytia hemisphaericaexon
TCONS_00071263-exon-scaffold_60-1491911889:915545..916123TCONS_00071263-exon-scaffold_60-1491911889:915545..916123Clytia hemisphaericaexon
TCONS_00071263-exon-scaffold_60-1510915933:915545..916123TCONS_00071263-exon-scaffold_60-1510915933:915545..916123Clytia hemisphaericaexon
TCONS_00071263-exon-scaffold_60-1575043694:915545..916123TCONS_00071263-exon-scaffold_60-1575043694:915545..916123Clytia hemisphaericaexon
TCONS_00071263-exon-scaffold_60-1491911889:916419..916835TCONS_00071263-exon-scaffold_60-1491911889:916419..916835Clytia hemisphaericaexon
TCONS_00071263-exon-scaffold_60-1510915933:916419..916835TCONS_00071263-exon-scaffold_60-1510915933:916419..916835Clytia hemisphaericaexon
TCONS_00071263-exon-scaffold_60-1575043694:916419..916835TCONS_00071263-exon-scaffold_60-1575043694:916419..916835Clytia hemisphaericaexon
TCONS_00071263-exon-scaffold_60-1491911889:917470..917631TCONS_00071263-exon-scaffold_60-1491911889:917470..917631Clytia hemisphaericaexon
TCONS_00071263-exon-scaffold_60-1510915933:917470..917631TCONS_00071263-exon-scaffold_60-1510915933:917470..917631Clytia hemisphaericaexon
TCONS_00071263-exon-scaffold_60-1575043694:917470..917631TCONS_00071263-exon-scaffold_60-1575043694:917470..917631Clytia hemisphaericaexon
TCONS_00071263-exon-scaffold_60-1491911889:917930..918417TCONS_00071263-exon-scaffold_60-1491911889:917930..918417Clytia hemisphaericaexon
TCONS_00071263-exon-scaffold_60-1510915933:917930..918417TCONS_00071263-exon-scaffold_60-1510915933:917930..918417Clytia hemisphaericaexon
TCONS_00071263-exon-scaffold_60-1575043694:917930..918417TCONS_00071263-exon-scaffold_60-1575043694:917930..918417Clytia hemisphaericaexon
TCONS_00071263-exon-scaffold_60-1491911889:922285..922363TCONS_00071263-exon-scaffold_60-1491911889:922285..922363Clytia hemisphaericaexon
TCONS_00071263-exon-scaffold_60-1510915933:922285..922363TCONS_00071263-exon-scaffold_60-1510915933:922285..922363Clytia hemisphaericaexon
TCONS_00071263-exon-scaffold_60-1575043694:922285..922363TCONS_00071263-exon-scaffold_60-1575043694:922285..922363Clytia hemisphaericaexon
TCONS_00071263-exon-scaffold_60-1491911889:922663..922817TCONS_00071263-exon-scaffold_60-1491911889:922663..922817Clytia hemisphaericaexon
TCONS_00071263-exon-scaffold_60-1510915933:922663..922817TCONS_00071263-exon-scaffold_60-1510915933:922663..922817Clytia hemisphaericaexon
TCONS_00071263-exon-scaffold_60-1575043694:922663..922817TCONS_00071263-exon-scaffold_60-1575043694:922663..922817Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071263-proteinTCONS_00071263-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:914990..922817 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.0268785	0.0424795	0	0	0.0167957	0	0	0	0.0662785	0.0412985	0.0113177	0	0.149624	0.0766797	0.0423749	0.0665134	2.44738	0.563975	0.0228529	0.145436	0.727579	1.08861	0	0.0291671	0.1991	0.247929
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002035VWF_A
Blast
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BLAST of TCONS_00071263 vs. Swiss-Prot (Human)
Match: CO6A6 (Collagen alpha-6(VI) chain OS=Homo sapiens GN=COL6A6 PE=1 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 2.108e-36
Identity = 182/681 (26.73%), Postives = 313/681 (45.96%), Query Frame = 1 
Query:   25 VLRIENFGDLLA--QDFIRKATNAVCKSANSKSCATSM-----------DIGFILDSSGSLR-NQYPQIKGFIQDFANNLDISKDGVHVGVVTFSFYASLSIKFSDYVDKTAFKTAVGNIPLMGSTTRIDKALKISKDELFSTSNGARKDVPKILILLTDGSQTQDRDAV-DPGKVAKTLRENDITIVSIGIGKGVNVDELEHIAGDRSRVYQADDFDKLIEGGFINNILQKSCETAKFKENRFNTVSDITFMLDGXXX-XXXXFGSLKDFIIYIMSRF---TQYAHFGVLLGGDXXXXXXXXXXXXXXENLRA---QMANINLAGGDRMNLDNSLQQALTEMQDQSSGMRQGVPKMFVLLTTSHQKPTGKELDKIKQIQELGGMFIIVAVGTINYDPSFLFSIPREQKNVHLLPGQSGLNNAFADVISKQISSSAENIKQDAVIDLGFIIDSSASFK-DYYDLEKDFIKRIGSRFNLDQYKTRTSVMTYSNYINMISKFADFHGQKSFESAIDNAAFSGSTSRIDKALAEANDNMFSVKSGGR--AGVKQVLVIVTDGVSS-ASGVDPFAIAKKIKNQNIHVIVVAVGDAIKANSLDALG--DQVFYVNDYSDLGSL--DTSAKVLDS--VTTEADKNVEALCQQEVDVGFILDSSGSLR-NEYTKEKDFLKAMAAQFDI 1968
            V +++ F DL A  Q F++K  N +  + +  S  T             DI  ++D SGS +   + ++K F+ +     +I+   V VG V ++    L  + + Y +K     A+ NI  MG  T    AL  +   L          VP  L++LT+G     +D++ +P   A  LRE  I + +IGI K  N  +L  IAG+  RVY   DFD L +    N ++Q+ C     KE +    +DI F++D S S     F  +K F+  ++S+          GV+   D ++   + +   S  ++     QMA+I      +  L  S    +++    + G R  + K  +L+T    +   KE   +  +++ G   II +VG    + + L  I    + V  +     L     D++   I S  E  K+  V+D+ F+IDSS S   D Y++ KDF+  +  + ++ + + R   + Y++   ++    DF  +    S + N    G ++   +AL   +D+MF+   G R   GV QVL+++TDG S  A  ++  A AK ++++ I V+ V +  A     L   G  D+ F+V  +  L  +  D +A V +S  V  E DK         VD+ F++D S S++ N++ K K+FL ++   FD+
Sbjct:  387 VSKLKTFADLAAHNQTFLKKLRNQITHTVSVFSERTETLKSGCVDTEEADIYLLIDGSGSTQATDFHEMKTFLSEVVGMFNIAPHKVRVGAVQYADSWDLEFEINKYSNKQDLGKAIENIRQMGGNTNTGAALNFTLSLLQKAKKQRGNKVPCHLVVLTNG---MSKDSILEP---ANRLREEHIRVYAIGI-KEANQTQLREIAGEEKRVYYVHDFDALKD--IRNQVVQEICTEEACKEMK----ADIMFLVDSSGSIGPENFSKMKTFMKNLVSKSQIGPDRVQIGVVQFSDINKEEFQLNRFMSQSDISNAIDQMAHIG-----QTTLTGSALSFVSQYFSPTKGARPNIRKFLILITDGEAQDIVKEPAVV--LRQEG--VIIYSVGVFGSNVTQLEEISGRPEMVFYVENFDILQRIEDDLVFG-ICSPREECKRIEVLDVVFVIDSSGSIDYDEYNIMKDFMIGLVKKADVGKNQVRFGALKYADDPEVLFYLDDFGTKLEVISVLQNDQAMGGSTYTAEALG-FSDHMFTEARGSRLNKGVPQVLIVITDGESHDADKLN--ATAKALRDKGILVLAVGIDGANPVELLAMAGSSDKYFFVETFGGLKGIFSDVTASVCNSSKVDCEIDK---------VDLVFLMDGSTSIQPNDFKKMKEFLASVVQDFDV 1032

HSP 2 Score: 122.865 bits (307), Expect = 1.433e-28
Identity = 159/643 (24.73%), Postives = 287/643 (44.63%), Query Frame = 1 
Query:  133 DIGFILDSS--GSLRNQYPQIKGFIQDFANNLDISKDGVHVGVVTFSFYASLSIKFSDYVDKTAFKTAVGNIPLMGSTTRIDKALKISKDELFSTSNGARKD--VPKILILLTDGSQTQDRDAVDP-GKVAKTLRENDITIVSIGIGKGVNVDELEHIAGDRSRVY--QADDFDKLIEGG--FINNILQKSCETAKFKENRFNTV---------SDITFMLDGXXXXXXX-FGSLKDFIIYIMSRFTQYAH---FGVLLGGDXXXXXXXXXXXXXXENLRAQMANINLAGGDRMNLDNSLQQALTEMQDQSSGMRQGVPKMFVLLTTSHQKPTGKELDKIKQIQELGGMFIIVAVGTINYDPSFLFSIPREQKNVHLLPGQSGLNNAFADVISKQISSSAENIKQDAVIDLGFIIDSSASF-KDYYDLEKDFIKRIGSRFNLDQYKTRTSVMTYSNYINMISKFADFHGQKSFESAIDNAAFSGSTSRIDKALAEANDNMFSVKSGGRAGVKQVLVIVTDGVSSASGVDPFAIAKKIKNQNIHVIVVAVG----DAIKANSLDALGDQVFYVNDYSDLGSLDTSAKVLDSVTTEADKNVEALCQQEVDVGFILDSSGSL-RNEYTKEKDFLKAMAAQFDIGKS 1977
            D+ F+LD S  GS  N +  +KGF+++  + LDI ++ + VG+V +S    +    S  ++K+     + N+           A+K  + E+FS  NG+RK+  VP+I +L+T       RD+ D   K A  LR   +TI ++GI +G +  +LE IA   +  Y  +   F  L      F+  +  +   T      R  T+         +DI  ++DGS S  +  F  +K F+  ++  F    H    G +   DS     + +   + ++L   + NI   GG+  N   +L   L+ +Q         VP   V+LT    K +   L+   +++E      + A+G    + + L  I  E+K V+ +     L +    V+ +  +  A    ++   D+ F++DSS S   + +   K F+K + S+  +   + +  V+ +S+      +   F  Q    +AID  A  G T+    AL+  +   FS   G R  +++ L+++TDG +     +P  + ++       VI+ +VG    +  +   +    + VFYV ++  L  ++           E  K +E L     DV F++DSSGS+  +EY   KDF+  +  + D+GK+
Sbjct:  229 DVVFLLDMSINGSEEN-FDYLKGFLEESVSALDIKENCMRVGLVAYSNETKVINSLSMGINKSEVLQHIQNLSPRTGKAYTGAAIKKLRKEVFSARNGSRKNQGVPQIAVLVT------HRDSEDNVTKAAVNLRREGVTIFTLGI-EGASDTQLEKIASHPAEQYVSKLKTFADLAAHNQTFLKKLRNQITHTVSVFSERTETLKSGCVDTEEADIYLLIDGSGSTQATDFHEMKTFLSEVVGMFNIAPHKVRVGAVQYADSWDLEFEINKYSNKQDLGKAIENIRQMGGN-TNTGAALNFTLSLLQKAKKQRGNKVPCHLVVLTNGMSKDS--ILEPANRLRE--EHIRVYAIGIKEANQTQLREIAGEEKRVYYVHDFDALKDIRNQVVQEICTEEA---CKEMKADIMFLVDSSGSIGPENFSKMKTFMKNLVSKSQIGPDRVQIGVVQFSDINKEEFQLNRFMSQSDISNAIDQMAHIGQTTLTGSALSFVS-QYFSPTKGARPNIRKFLILITDGEAQDIVKEPAVVLRQEG-----VIIYSVGVFGSNVTQLEEISGRPEMVFYVENFDILQRIEDDLVFGICSPREECKRIEVL-----DVVFVIDSSGSIDYDEYNIMKDFMIGLVKKADVGKN 844

HSP 3 Score: 120.939 bits (302), Expect = 5.325e-28
Identity = 141/565 (24.96%), Postives = 255/565 (45.13%), Query Frame = 1 
Query:   64 DFIRKATNAVCKSANSKSCATSM--DIGFILDSSGSLRNQ-YPQIKGFIQDFANNLDISKDGVHVGVVTFSFYASLSIKFSDYVDKTAFKTAVGNIPLMGSTTRIDKALKISKDELFSTSNGARKDVPKILILLTDGSQTQDRDAVDPGKVAKTLRENDITIVSIGIGKGVNVDELEHIAGDRSRVYQADDFDKL--IEGGFINNILQKSCETAKFKENRFNTVSDITFMLDGXXXXXX-XFGSLKDFIIYIMSRF---TQYAHFGVLLGGDXXXXXXXXXXXXXXENLRAQMANINLAGGDRMNLDNSLQQALTEMQDQSSGMRQGVPKMFVLLTTSHQKPTGKELDKIKQIQELGGMFIIVAVGTINYDPSFLFSIPREQKNVHLLPGQSGLNNAFADVISKQISSSAENIKQDAVIDLGFIIDSSASFK--DYYDLEKDFIKRIGSRFNLDQYKTRTSVMTYSNYINMISKFADFHGQKSFESAIDNAAFSGSTSRIDKALAEANDNMFSVKSGGR--AGVKQVLVIVTDGVSSASGVDPFA-IAKKIKNQNIHVIVVAVGD 1716
            D ++   N V +   ++     M  DI F++DSSGS+  + + ++K F+++  +   I  D V +GVV FS       + + ++ ++    A+  +  +G TT    AL     + FS + GAR ++ K LIL+TDG   + +D V   + A  LR+  + I S+G+  G NV +LE I+G    V+  ++FD L  IE   +  I     E  + +      V D+ F++D S S     +  +KDF+I ++ +         FG L   D  +         +   + + + N    GG     +          + + S + +GVP++ +++T        K     K +++ G   +++AVG    +P  L ++         +    GL   F+DV +   +SS  + + D V DL F++D S S +  D+  + K+F+  +   F++   + R     +S+  +       F G+K     I+N       + I  AL E  ++ F    G R   G  QVL+++TDG S     D  A  A+ ++++ I +  V +GD
Sbjct:  597 DALKDIRNQVVQEICTEEACKEMKADIMFLVDSSGSIGPENFSKMKTFMKNLVSKSQIGPDRVQIGVVQFSDINKEEFQLNRFMSQSDISNAIDQMAHIGQTTLTGSALSFV-SQYFSPTKGARPNIRKFLILITDG---EAQDIVK--EPAVVLRQEGVIIYSVGV-FGSNVTQLEEISGRPEMVFYVENFDILQRIEDDLVFGICSPREECKRIE------VLDVVFVIDSSGSIDYDEYNIMKDFMIGLVKKADVGKNQVRFGALKYADDPEVLFYLDDFGTKLEVISVLQNDQAMGGSTYTAEALGFSDHMFTEARGSRLNKGVPQVLIVITDGESHDADKLNATAKALRDKG--ILVLAVGIDGANPVELLAMAGSSDKYFFVETFGGLKGIFSDVTASVCNSSKVDCEIDKV-DLVFLMDGSTSIQPNDFKKM-KEFLASVVQDFDVSLNRVRIGAAQFSDTYHPEFPLGTFIGEKEISFQIENIKQIFGNTHIGAALREV-EHYFRPDMGSRINTGTPQVLLVLTDGQSQ----DEVAQAAEALRHRGIDIYSVGIGD 1139
The following BLAST results are available for this feature:
BLAST of TCONS_00071263 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CO6A62.108e-3626.73Collagen alpha-6(VI) chain OS=Homo sapiens GN=COL6... [more]
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