TCONS_00071331 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071331
Unique NameTCONS_00071331
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length450

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071331 ID=TCONS_00071331|Name=TCONS_00071331|organism=Clytia hemisphaerica|type=transcript|length=450bp
gAAGAATAATGGAAGATTCGAATTATTTGACATTCGATTTTGGGATTTGG
TTGTTTATTTTACATGTTTGGTAGTATGATTCGCGATAGTATTTATAAAC
TTATGATAAACCTGGATTTTGCCAAATGTGTCCTAgaattgtttttaatt
tgaatgCTCGTTATTAAGTGTAGTTTAAGTATACTTGTGGATATTTTCGC
TTTGCATTATGGATAATTATGAATTGGAGGAAGAAACGATGGCCTCGTTA
CAAAGGTCAATGATTTCAGAAGAGTTCTCACAAACTTACCAAGATATGGA
GAATTTCTTGGCAGATTATCCGAGGAGAATTCTAACGAAACCTCACAACG
ATCCAGAGAGAACCTTACATCGTAAATACGTTGAATTATCAGCTTTAGTC
AGACGCCTGGATGAACGAAATCAACAACTGTCGCTCCACTCGCAGAAAAT
Run BLAST on NCBI

transcript from alignment at scaffold_60:161085..161850-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071331 ID=TCONS_00071331|Name=TCONS_00071331|organism=Clytia hemisphaerica|type=transcript|length=766bp|location=Sequence derived from alignment at scaffold_60:161085..161850- (Clytia hemisphaerica)
GAAGAATAATGGAAGATTCGAATTATTTGACATTCGATTTTGGGATTTGG
TTGTTTATTTTACATGTTTGGTAGTATGATTCGCGATAGTATTTATAAAC
TTATGATAAACCTGGATTTTGCCAAATGTGTCCTAGAATTGTTTTTAATT
TGAATGCTCGTTATTAAGTGTAGTTTAAGTATACTTGTGGATATTTTCGC
TTTGCATTATGGATAATTATGAATTGGAGGAAGAAACGATGGCCTCGTTA
CAAAGGTCAATGATTTCAGAAGAGTTCTCACAAACTTACCAAGATATGGA
GAATTTCTTGGCAGATTATCCGAGGAGAATTGTAAGTGAAATTCTCATGA
CATTCATATTCAGGGATATCTGGATTCATGAGATGAGTAAATGTTAGAAA
GTTGCTTGATTTAATTGAATACTAGCTAGTTTTTTTATTACAGTATATTT
TTATACATATAGAAAAGCGTGCTTACGACTTTGGAACTATGCAATTTCAA
AGTTTGTTGCAACTGCTTTTTTATCAAAAAATACTAGTAGATTTCGCCCT
ACATCAGCGTCAAAATGAAGTCTGGTGTGGAAATGCAGCAATTTTATAAC
AGACCTAGATTAAAGGCAATAACCAGAATCTTAATCTTCCACCATAGCTA
ACGAAACCTCACAACGATCCAGAGAGAACCTTACATCGTAAATACGTTGA
ATTATCAGCTTTAGTCAGACGCCTGGATGAACGAAATCAACAACTGTCGC
TCCACTCGCAGAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044328XLOC_044328Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071331-exon-scaffold_60-1575043694:161520..161850TCONS_00071331-exon-scaffold_60-1575043694:161520..161850Clytia hemisphaericaexon
TCONS_00071331-exon-scaffold_60-1575043694:161085..161203TCONS_00071331-exon-scaffold_60-1575043694:161085..161203Clytia hemisphaericaexon
TCONS_00071331-exon-scaffold_60-1510915933:161520..161850TCONS_00071331-exon-scaffold_60-1510915933:161520..161850Clytia hemisphaericaexon
TCONS_00071331-exon-scaffold_60-1510915933:161085..161203TCONS_00071331-exon-scaffold_60-1510915933:161085..161203Clytia hemisphaericaexon
TCONS_00071331-exon-scaffold_60-1491911889:161520..161850TCONS_00071331-exon-scaffold_60-1491911889:161520..161850Clytia hemisphaericaexon
TCONS_00071331-exon-scaffold_60-1491911889:161085..161203TCONS_00071331-exon-scaffold_60-1491911889:161085..161203Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:161085..161850 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.574214	0.166679	0	0	0	1.89262	2.83496	0.372155	0.307316	0.74572	1.27454	1.9581	1.62681	1.17027	4.4853	0.663062	2.49193	0	0.163753	1.28098	0.624819	0.675155	1.53453	2.68691	1.55165	0.605565	0.215425	0.326784	0.166471
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071331 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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