TCONS_00071333 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00071333
Unique Name	TCONS_00071333
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2739

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_60:169275..177729-
coding sequence from alignment at scaffold_60:169275..177729-

transcript sequence

>TCONS_00071333 ID=TCONS_00071333|Name=TCONS_00071333|organism=Clytia hemisphaerica|type=transcript|length=2739bp
TTTTAGAACTAGAATAAATACTTTTATGTAACATCTACATAAATTTAAAG
TCAATTTCATAAGTCAAAATGAATGTTTCAAATCGCCATGAAAATCCTGA
AGAAATGGAAGAAGAAGATGATACCTTTCAAACtgatcCGGTAGAAGTTC
TGAAGTTGTCTGCCAAAACTCTTGAAGGCTCAGCATTTGGCGCTCGTCTA
CCATCTGACCAAATGACTGCACATGAAGCATCATGTTTTCAAGACATCAG
CCAAGGCTCCACTGCTAaccaaaagaaatttctttataTTCGTAACAGGA
TTatTCAATGCTGGTTAAGCAACCCAAGGGAAGAATTAATTGTTGAGCAT
GCATTAGCCAAGATCGAACCTCCTTTTCATGATGACCCAATCTTGACGAA
GAGAATTCATGCCTTCTTGGATAGATATGGTTCAATCAATATTGGTGTCT
ACAAATTTCATCGTTCACCTCCAGTTCTTAAGAATGCCCCAAAGATCCTA
GTCATTGGAGCAGGGATGTCTGGATTGACAGCTAGCAGACAATTGAAATC
TTTTGGGTTTGAGGTTGTTACCTTGGAAGCACGTGAACGAGTTGGTGGAC
GCGTTGCAACTTTCCGGCAAGGCCCTTTCATTGCTGATCTTGGAGCTATG
GTTGTCACTGGGCTCGGTGGGAATCCTGTCACTGTGATTAGTAACCAAGT
TGATGTCAAACTCACAAAAATCCGGCAAAGATGCCCACTTTATGAATGCA
ATGGACAAATGGTACGCAAAGACAAAGATGAACTGGTGGAGAGAGAATTC
AATCGACTACTGGAATCTACATCTTATCTGTCTCACGTGCTTGGCTTCAA
TGCATTGTTTCAGAAACCACTGTCGCTTGGTAACGCTATTGAACTTGTCA
TTAAattgatggAGAAGCAAGTTAAAGAGAAACAATGTGAACACAGCCAA
AAAATTCTCGAGTTTCAAAATCGTTTGAAAGAAGTACAGTTTGAGATGAT
CAAATTACGAGACCAGATTGAGAAAGCAAATATCGAGTGGAAACATGCTA
TCCAGCAGAAACCTCCAAGAGACGTAACGGACGAATTCACAGTTCGAAGC
AAACAAAGAGACTTGTTACAGTTATTCAAAGAACATGACGGTTACGCTGA
GAAGCAAAAAGAACTAGAAACGAAAATCAAAGATTACGAAGAAAACCCTC
CAAGTGATGTATACTTATCATTACGCGATCGTCAGATTTTGGATTGGCAT
CTTGCAAACCTCGAATTCGCCAACGCTACACCTTTATCCGCCCTTTCATT
GAAACATTGGGATCAAGACGATGATTTTGAATTCACTGGCAGTCACATGA
CTGTTAGCAATGGCTTTTCGTGTATCCCTGCTGCTCTAGCCGAGGGTCTA
GATATTCGCTTGAATACTGCTGTCCGAAATGTCAAATATACACGACAAGG
TGTTGAAGTTGTAGGAGTAACAAATAAGAACGGTATCCCGACAAGTCAAA
CATTCAAAGCAGATGCAGTGTTGTGTACATTACCTTTGGGTGtattgaaa
cataaaaatcCACCCTCTATACATTTCAATCCTCCGCTTCCTGATTGGAA
AACTGGCGCCATGGATCGAATGGGATTCGGAAATCTTAATAAGGTGATTT
TATGCTTCGACCGTGTCTTTTGGAATTCAAGCACTAATCTCTTTGGCCAC
GTGGCCTCGACCACATCAAATCGTGGTGAACTCTTCTTATTCTGGAGTAT
CTACAAAGCGCCCGTTCTTTTGGCGTTAGTGGCGGGTGAGGCGGCAAACA
AATTGGAAACCTATTCCGATGACGTTATCATTGGGAGAGCCTTGACCGTg
ctcaaaggaattttcggaaGTAATAATGTTCCTCAGCCAAAAGAGACGAT
TGTTACGCGATGGAAATCCGACGAATGGTCACGTGGCTCTTATTCTTTTG
TTGCTGCTGGTTCCTCTGGCAACGATTATGACATCATGGCCGCCCCTGTA
GTACCGCCCCCACCACCAGAGAAGCCTGTCATTCCGGGTAGTAATATTCC
GAGATTATTTTTCGCCGGTGAGCATACTATACGGAACTATCCAGCAACGG
TACACGGAGCTTTATTGAGTGGTTTAAGAGAAGCAGGTCGAATTGCAGAT
CAGTTTCTTGGTCTACCTTACGATTTGAATAAGTTCACTTAAGTGAATTG
AGCTCcgtatttctttttgttttgatttgatgggCGAATTATAAACTTGA
AAGATGAACCCTGTTTGTTGGGGTACTACTTTTCATCACGTGCTGATGAA
ACCTATGTTTGGAGCTTCTGGAATCGAGCTATCATCTTCACAGCTTCGTG
AAAATCGAGGTTTCTTTTGTGGTTACGctataaaaaaacatacctCAAGT
CTGATGTTAGAAATGCTGATTTTTGTACAGTGTGTGGTGTAAATATTCCT
TGTCGAGGTACTGGCTCAAAATGAATTCATACATAACTTGCTTTCCTCGT
TAATAATTGTGTTGGTTTGTCGGATTGAAGTTAAACTATTTTAAAGAATA
AACATGTAATTGGCTGAAAAGATTGCCGAaatgtatacacgtttttttat
ttaagaacaaactatataagaacataaggcttcgatggccaaaatgttaa
gaacattttaaagcaggctgatttcttaggaaaatggacgaaaatactca
aaaaatggcaaaaataagaacattttcataacatttttt

Run BLAST on NCBI

protein sequence of TCONS_00071333-protein

>TCONS_00071333-protein ID=TCONS_00071333-protein|Name=TCONS_00071333-protein|organism=Clytia hemisphaerica|type=polypeptide|length=707bp
MNVSNRHENPEEMEEEDDTFQTDPVEVLKLSAKTLEGSAFGARLPSDQMT
AHEASCFQDISQGSTANQKKFLYIRNRIIQCWLSNPREELIVEHALAKIE
PPFHDDPILTKRIHAFLDRYGSINIGVYKFHRSPPVLKNAPKILVIGAGM
SGLTASRQLKSFGFEVVTLEARERVGGRVATFRQGPFIADLGAMVVTGLG
GNPVTVISNQVDVKLTKIRQRCPLYECNGQMVRKDKDELVEREFNRLLES
TSYLSHVLGFNALFQKPLSLGNAIELVIKLMEKQVKEKQCEHSQKILEFQ
NRLKEVQFEMIKLRDQIEKANIEWKHAIQQKPPRDVTDEFTVRSKQRDLL
QLFKEHDGYAEKQKELETKIKDYEENPPSDVYLSLRDRQILDWHLANLEF
ANATPLSALSLKHWDQDDDFEFTGSHMTVSNGFSCIPAALAEGLDIRLNT
AVRNVKYTRQGVEVVGVTNKNGIPTSQTFKADAVLCTLPLGVLKHKNPPS
IHFNPPLPDWKTGAMDRMGFGNLNKVILCFDRVFWNSSTNLFGHVASTTS
NRGELFLFWSIYKAPVLLALVAGEAANKLETYSDDVIIGRALTVLKGIFG
SNNVPQPKETIVTRWKSDEWSRGSYSFVAAGSSGNDYDIMAAPVVPPPPP
EKPVIPGSNIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQFLGLP
YDLNKFT

Run BLAST on NCBI

transcript from alignment at scaffold_60:169275..177729-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00071333 ID=TCONS_00071333|Name=TCONS_00071333|organism=Clytia hemisphaerica|type=transcript|length=8455bp|location=Sequence derived from alignment at scaffold_60:169275..177729- (Clytia hemisphaerica)
TTTTAGAACTAGAATAAATACTTTTATGTAACATCTACATAAATTTAAAG
TCAATTTCATAAGTCAAAATGAATGTTTCAAATCGCCATGAAAATCCTGA
AGAAATGGAAGAAGAAGATGATACCTTTCAAACTGGTTTGTGTTTTAAAA
TTCCTTAACTTTTGTTTTGTCAACTGGTAGAAAAGTTGAAAAACCTTTGA
GTAACATATTTTTCAAAAGTTTCAAAATTGAGCATCATCCTTTTTTATGA
TTTTTCACTTTAACTTTTCATTTTAACCTTTTTTTATAGTTTTTAATGCA
ATATTTCTTTGTAAAAAATGATTGTATAGCTAAAATCAGGAGGCAGAAGT
ATTGTATTAAAAATTGAAGTTCCTAGCACCAAATGGAAAGTTCAATTTTT
ATCTCCATTTCAAAATATATTTTTCATTATCTTTCTCACAGATTATATAG
AGTTTTGAATTATCTTTTCAAAAGTTTATAATATGTTAGAATTAAGACTT
TGTTAAAAATGGCAAGCAAAAAAAAAATTAGTACACACTTAAATGAAATG
GACTTTTTTCATTTCAGATCCGGTAGAAGTTCTGAAGTTGTCTGCCAAAA
GTAAGCATTTTTTTATGTTGAAATATTACTACTGATGATTGAACAATTCT
GATAAAATATGCATTAGACAAATTTCAGAAACTCTTTCTTAAAACCTTCT
ACAGAGAGAGAGAGACAACGATAGGCCGTGTGAAATATCTCAATTAATAA
TGTCCCAATTTTGCTTGAAAACAATAGAAAATCAAATCAATTTTGGAAAA
ATCAAGTTAAAATGATTTATCTGATTTCACTGAGTCTGGTCAGAACAGAA
TTAAAATCTATTTAAATTAATCCCTTGTAAAGTAACTAATTTAACTTTAT
ATTCGATTATCCTTAGCTCTTGAAGGCTCAGCATTTGGCGCTCGTCTACC
ATCTGACCAAATGACTGCACATGAAGCATCATGTTTTCAAGACATCAGCC
AAGGCTCCACTGCTAACCAAAAGAAATTTCTTTATATTCGTAACAGGATT
GTAAGTGAAACATGAAGTCGATTTGTCTTTGATGTGTAATTTTTTTACTA
CCACAATGTGTGAACCACTCTCAATTAGTTTTAAAAATTACACTGACATG
AAAAAACTCATCAAATCTGGTCGGTTTTAAACGATGATGAAACATTCAAA
AATTTTCTCCATTTTTCTTGGCAAAAGTACAGTGCATTTCTCATGGTTGG
AACTTTTCAATTTTAGATTCAATGCTGGTTAAGCAACCCAAGGGAAGAAT
TAATTGTTGAGCATGCATTAGCCAAGATCGAACCTCCTTTTCATGGTAAG
CTTTTGCATATAGGGTTTGCATAAAGCAGTTTAAAAATTATAACCNAATG
GTAAGCTTTTGCATAAAGGGTTTGCATAAAGCAGTTTAAAACAATAACCT
CTAATGACATAATGGTATAAGAATTTGCCAAATCAATCTCTTTCTTTTTA
GCTTTTAAAGGAATTTGGTCGATTATTTGATGATATGAATTTGGTTAAAA
TCTCAGGGCCAATTCAATTCAATTACTACTTTTATAATTTCACTTTATGT
TATATGTTAGATGACCCAATCTTGACGAAGAGAATTCATGCCTTCTTGGA
TAGATATGGTTCAATCAATATTGGTGTCTACAAATTTCATCGTTCACCTC
CAGTTCTTAAGAATGCCCCAAAGATCCTAGTCATTGGAGCAGGGATGTCT
GGATTGACAGCTAGCAGACAATTGAAATCTTTTGGGTTTGAGGTTGTTAC
CTTGGAAGCACGTGAACGAGTTGGTGGACGCGTTGCAACTTTCCGGCAAG
GCCCTTTCATTGCTGATCTTGGAGCTATGGTTGTCACTGGGCTCGGTAAC
TTTTTTCTCTATCACTGAACTTTATAATTGAGTTATTTAACAGGGATAGT
TCCGCTTTCTTCTGTCAAATAAACTTCAAATGAGTCAATTTTTTTAGTTT
TTTTAGAGGCAATCAATCAAATCAATTTTAGGGCTATTTGTTTTTACGTA
CATAAGAATCGTCGAGACTAAAGTCTGAGTAAGTTTCTATAAAGGGGAAA
AATGTTCTTTTAAGGTGGGAATCCTGTCACTGTGATTAGTAACCAAGTTG
ATGTCAAACTCACAAAAATCCGGCAAAGATGCCCACTTTATGAATGCAAT
GGACAAATGGTACGTTTTTGCAATACACCTTTTCGACCGTAGCTGCAAGT
TACTGCGCGGGCATTTTCTGTCCGTTTTACTACTGTAAAACCGTCCCAGT
CTTTTTTTCGCACCTATAGACAATAGAAAAAGGTGTAGAATTAGAAAAGG
ATTGGATCGAGTTTAGAATGGTAAAACGGTAAAAAAAGTGCCCGCCCGGC
AATTGGTGGCTACGGTCGAAAAGGTGTATTATTCATTCATAATTCGATGT
TTTTACCCTTTGTCCATCATTGGGATAAGTTTCATAACCTCTTAAATTCA
TCTCAATTGTAGGTGAAAATCTCAGCACTATTCATATCATAAGTTCATAT
TATAACACCTGTTGATTTTGATATATTAGGGGGAATTTTGACCAATGGTA
GATACAGTCCCATGGGTTTTTGATAATTTGACTTGTCTGTAAAATATATG
TGAGAAATTAGAAAAGCTGAAAATCTTTCCTTGAAATATTCACTTGTGCA
TAGTGTGCAGAAAGGTCTGAACCCCCTCCCATTTTTATTACATTCCCTTA
TATTGTGTATCCCCTATTTTAAATAATTTTCGAGCCCGCGCTATTTACAA
CAGCAGTCCACTAGTCATTCAAAACCAAAAACATTGAAATTTGTATTAAA
AATTATATGAAAAAAGAGTTCAACATGGTGCCGCAGGCGAAAATTTAGCT
ATCTACACTTGTTTTTTAGTTGACCCACACCAAATATCTAAATCAATATA
AAATATGATAAATATTTTGACCAACAGTTGTTATCCCCCCTATTTTTACT
TGACCCATCCTAAAATCTCAAAACCCCCATTTTATTCGGAAAATCTCTTA
CCCCCCCCCCTTTTTAGGTCTTTTTGGGAAATGTTGACCCCCCCCCCCCT
AAAAACCCTTCTGGAAAAGTTGGACCCCCCCCCCCCTAAAAACCCTTCTG
GAAAAGTTGGACCCCCCCCCCCTTAAAAAAAGGGGGGTCCACACTATGGA
TACTTAATTATTATCAAAGGTAGGTGTGCAAAATTCATGTTCGTTCAGTT
ACGTGGGTTCAAAAGACTTTTATACAGTAATGTCAATCTGTGTCTATCAA
TTTTGCTGAAATTGCCTAAGATTGAGCCTGCAAAATTTGGGCAAAAAATG
AAGGTGAAAAAAGTTAGAGGTCCTTTTTTTGGTCATTCAAGATTTTCAAT
CAAGGGTCAATCCATATCTGGTGTAGCGATGTTTTTTCTTTCCATCCAAA
AGAAATTTGACTTTACAAATTGTATTATGCAGGTACGCAAAGACAAAGAT
GAACTGGTGGAGAGAGAATTCAATCGACTACTGGAATCTACATCTTATCT
GTCTCACGTGCTTGGCTTCAATGCATTGTTTCAGAAACCACTGTCGCTTG
GTAACGCTATTGAACTTGTCATTAAGTAAGTGGAGTAGTTAAAGCGAAAG
TATTTCTATAAGGATGGCGGCTATTCCAAGGTAAAAAATGCACATCCTAT
GTGGAGGAGATCATTTTTGGAAGTTCAACCTCATGAGTTTTCACCGAAAG
TTTAGTGTTTTGTCCTATTTGAGCTGCCTTATTGATTTCTTTACATTTTC
TCCAGGATATTTGTGGGACAACCTGTATGGAAATCCTTCCTCCTTTATTT
GGGAATTAATTTTTCATTTTTAGTTTATTTTGTTCTGGTTCTTAATTAAA
GTTGTTAGAGGTTTTGTTTTGATTGAAAGGTCTGATGATGCTGATGTAGT
AAAAACAAGTGCGACAAGATTAGAAAAAGGTTTTGAAAAATGAAAATACA
TCGAATAAAATAATATTCCTCAAACAAAGGGATTTTTACTGATACTCTTT
CGAATGTTTTTATGTTTATAATAAATAGAACGTTTTCTATCTTAAAAATC
GTAAATTTGCTCGAAATCAACTTTGCTATTTTTTTGTTTACAAAAGCAAT
AGAATGTGAGGTCACATCCCGAAACAACTTTCGATCTTTCACTTGTTTGT
TGGATATCGTTGCGTAAAAAAGTAGCTTTAATCTATCTGACTCAGTATGA
AGACACTGCCTAAAATAAGCTCATTTTATTCCCGTAGACAACCTTTAACT
GTAACTTCAATAAATTATCTGTGCAATTACAATATTTATACAATATAAAC
ATTTTGTCTGTCTTTGTGTATCAAGAAACCAAGATGTCTTTTTTCGGACT
TGTTTTCGTCTTATTTTATCTGAAGTTATCAGCATATCAATACCTGGAAC
CTGAAACAAAGTTTTCCATTCAGGGAACATCATTTTCATCTTCGCTATAT
GTATTGTTTTTATTTTGCAGATTGATGGAGAAGCAAGTTAAAGAGAAACA
ATGTGAACACAGCCAAAAAATTCTCGAGTTTCAAAATCGTTTGAAAGAAG
TACAGTTTGAGGTAAAGATAAATAATAACGTATATTGTAAGGATTTGCGT
CAATCTAATGACACTTTGATTTAAAGCATCCAGTTACGTCATTGTTAATC
ATGATTTGCTTGCCCTAACATTGGCCAAAAAGGTTTTCTTTGTAAAGCAG
CAGTTAATAATTCCTATAGTGCTTGCTTGATAAAACATCAATTTGTTCTG
TTATTACAGAAAGCGTTCTCCCTTTGAGAAGTTAGTGTAAAGTATGTCGT
GCTTTTCTACTTAATCTTTAGCTTGCCATGGTAATGTCATGTTAATATTT
GTAGCCACGTACGATAATGAAGACGTACTCTCGCTTCATAAAATGACTTT
ATCTTGTTACTATTATCTAGATGATCAAATTACGAGACCAGATTGAGAAA
GCAAATATCGAGTGGAAACATGCTATCCAGCAGAAACCTCCAAGGTATCC
TTTCCAAGAAATCTTCTTAAAACCCCGAACACGATAAGTGAATTTTTAGT
GGCACTTTGAGATGATAGAAACCTGGAGATTTTTAAGTTTCAAAATAATT
GTCGCTCTTTTCTCGAGTTAAGCAGGTCTTTGCAAACAATAACTACACTC
ATCTTAAGGATCTAGGTATAGTTATTAGTTTTATTGTTAGATACTGTCAT
CATTCCGTTTTTAACTTTACAATTTTCTATAGAGACGTAACGGACGAATT
CACAGTTCGAAGCAAACAAAGAGACTTGTTACAGTTATTCAAAGTGAGTT
TCATTTTAGCTTCTTTTTCTTAATTGTTGAATGTTGTCTTTACCTTGCCT
TGCTTTACCCTCTTCTTACTAGAAGGTTTTATCTTAAGATTACCAATAGT
GAGTAACAGTAGTCACTGGTACTGAAACGATTCGGGACAAACTTTGACTG
GCAAAATGAAGGATGGTATTTCTCATGGATTATTTTATGGGCCAACTTAA
AAATTTCTGATTACCACTAGATAATGGTACTGAGAGCATGGGTCTGTTTT
CGTTATAGGAACATGACGGTTACGCTGAGAAGCAAAAAGAACTAGAAACG
AAAATCAAAGATTACGAAGAAAACCCTCCAAGGTAATCGATCAACTCTTT
TCCAAAAACCTTGACTTTGGAATCTAAGTTCTTGATCCTACTCACTAGGA
TTCATGGCTAAAGCTCGCTTTCGTATCATTCCAAAGATGTTTCATACTCT
CTTTCTAAAATATCATAATAAATAAACAGACTTGTAAATCGACCTTTTGC
GAGTATCTAACATTCAAAAATGAAGAAATTACGCGTTTACTTTTTTGATC
TGTCAGAAAATTTCTGTTTAGATTTCAGAAAATTCTGATTGATTTTTTAA
AGAGAAAACCTATTCTATTGAATAAAAGAGTGGAACTTATTTCTCGATAT
GTTCTTATCTTCTCAGTGATGTATACTTATCATTACGCGATCGTCAGATT
TTGGATTGGCATCTTGCAAACCTCGAATTCGCCAACGCTACACCTTTATC
CGCCCTTTCATTGAAACATTGGGATCAAGACGATGATTTTGAATTCACTG
GCAGTCACATGACTGTTAGCAATGGCTTTTCGTGTATCCCTGCTGCTCTA
GCCGAGGGTCTAGATATTCGCTTGAATACTGCTGTCCGAAATGTCAAATA
TACACGACAAGGTAAAGTCGAATGGCTTTAAATTTAATTTACCTTTGCAA
TTGATAATATTTCCGTGCATCTTTACATATTAGCCATGGTGGACATATTT
TGCTTCAGCAATTTCGTTTTTTATGAGCTTGCTCAGAAAAGAAAAACAAT
TAGCCCATGTTAAGTAAAGAATTATTCCAACTTTTATCTGGGGCTCCACG
TGGTTAAAAATATATTTTTGATGGAATTCCGAAAGGGTATCTCTTCAACT
GCGTTCAATTGATATTGTTCTTGGAAAGCTTAGCGCGTCTTCACATCGTA
AAGTAACGTACATATCAATGACGCAACTTTTTACTGTATGAAATTCTCAT
CTGTATTTTAGGTGTTGAAGTTGTAGGAGTAACAAATAAGAACGGTATCC
CGACAAGTCAAACATTCAAAGCAGATGCAGTGTTGTGTACATTACCTTTG
GGTGTATTGAAACATAAAAATCCACCCTCTATACATTTCAATCCTCCGCT
TCCTGATTGGAAAACTGGCGCCATGGATCGAATGGGATTCGGAAATCTTA
ATAAGGTTTGTTATTTCGGAATTTTAATTTCTAGTCGTTCTTATGGCCAA
AGATCAACAAAACATCAAAAGAAAGCTAGAAACTGTACGACTGTCAAAAA
ATAACTTAAATATCATGACACCTTATGGTTCATATTTTGGTTTTGCATGA
GAGAATTTCTTAAAATACGAGTTTTCTATTTTCAGGTGATTTTATGCTTC
GACCGTGTCTTTTGGAATTCAAGCACTAATCTCTTTGGCCACGTGGCCTC
GACCACATCAAATCGTGGTGAACTCTTCTTATTCTGGAGTATCTACAAAG
CGCCCGTTCTTTTGGCGTTAGTGGCGGGTGAGGCGGCAAACAAATTGGAA
ACCTATTCCGATGACGTTATCATTGGGAGAGCCTTGACCGTGCTCAAAGG
AATTTTCGGAAGTAATAATGTTCCTCAGGTATGTTACAGATATGATTTAT
CAATTTGAAGCCTCCAACTATGAAGCCTAGCTATTCCTAACTTAAATGAT
TCATTNAGTGCTCAAAGGAATCTTCGGAAGTAATAATGTTCCTCAGGTAT
GTTATAGATATGATTTATCAATTTGAAGCCTCCAACTATGAAGCCTAGCT
ATTCCTAACTTAAATGATTCATTCTACGCCTCTGATTTCCTCTAAGTCTT
ATACATGACAAACGAAAAAGCCTTAAAGTTGTTTACTTTCATTCTATATG
TCTTGACAAGCATAGAGTGAAAGTGAACAATGTTAAGGCTTTTTCTTTCT
AGAGCTGTCTAGAGACGATGTCTTTTCTTTTAAATTTAACATCTTTTTTT
AGCCAAAAGAGACGATTGTTACGCGATGGAAATCCGACGAATGGTCACGT
GGCTCTTATTCTTTTGTTGCTGCTGGTTCCTCTGGCAACGATTATGACAT
CATGGCCGCCCCTGTAGTACCGCCCCCACCACCAGAGAAGCCTGTCATTC
CGGGTAGTAATATTCCGAGATTATTTTTCGCCGGTGAGCATACTATACGG
AACTATCCAGCAACGGTACACGGAGCTTTATTGAGTGGTTTAAGAGAAGC
AGGTCGAATTGCAGATCAGTTTCTTGGTCTACCTTACGATTTGAATAAGT
TCACTTAAGTGAATTGAGCTCCGTATTTCTTTTTGTTTTGATTTGATGGG
CGAATTATAAACTTGAAAGATGAACCCTGTTTGTTGGGGTACTACTTTTC
ATCACGTGCTGATGAAACCTATGTTTGGAGCTTCTGGAATCGAGCTATCA
TCTTCACAGCTTCGTGAAAATCGAGGTTTCTTTTGTGGTTACGCTATAAA
AAAACATACCTCAAGTCTGATGTTAGAAATGCTGATTTTTGTACAGTGTG
TGGTGTAAATATTCCTTGTCGAGGTACTGGCTCAAAATGAATTCATACAT
AACTTGCTTTCCTCGTTAATAATTGTGTTGGTTTGTCGGATTGAAGTTAA
ACTATTTTAAAGAATAAACATGTAATTGGCTGAAAAGATTGCCGAAATGT
ATACACGTTTTTTTATTTAAGAACAAACTATATAAGAACATAAGGCTTCG
ATGGCCAAAATGTTAAGAACATTTTAAAGCAGGCTGATTTCTTAGGAAAA
TGGACGAAAATACTCAAAAAATGGCAAAAATAAGAACATTTTCATAACAT
TTTTT

Coding sequence (CDS) from alignment at scaffold_60:169275..177729-

>TCONS_00071333 ID=TCONS_00071333|Name=TCONS_00071333|organism=Clytia hemisphaerica|type=CDS|length=2124bp|location=Sequence derived from alignment at scaffold_60:169275..177729- (Clytia hemisphaerica)
ATGAATGTTTCAAATCGCCATGAAAATCCTGAAGAAATGGAAGAAGAAGA
TGATACCTTTCAAACTGATCCGGTAGAAGTTCTGAAGTTGTCTGCCAAAA
CTCTTGAAGGCTCAGCATTTGGCGCTCGTCTACCATCTGACCAAATGACT
GCACATGAAGCATCATGTTTTCAAGACATCAGCCAAGGCTCCACTGCTAA
CCAAAAGAAATTTCTTTATATTCGTAACAGGATTATTCAATGCTGGTTAA
GCAACCCAAGGGAAGAATTAATTGTTGAGCATGCATTAGCCAAGATCGAA
CCTCCTTTTCATGATGACCCAATCTTGACGAAGAGAATTCATGCCTTCTT
GGATAGATATGGTTCAATCAATATTGGTGTCTACAAATTTCATCGTTCAC
CTCCAGTTCTTAAGAATGCCCCAAAGATCCTAGTCATTGGAGCAGGGATG
TCTGGATTGACAGCTAGCAGACAATTGAAATCTTTTGGGTTTGAGGTTGT
TACCTTGGAAGCACGTGAACGAGTTGGTGGACGCGTTGCAACTTTCCGGC
AAGGCCCTTTCATTGCTGATCTTGGAGCTATGGTTGTCACTGGGCTCGGT
GGGAATCCTGTCACTGTGATTAGTAACCAAGTTGATGTCAAACTCACAAA
AATCCGGCAAAGATGCCCACTTTATGAATGCAATGGACAAATGGTACGCA
AAGACAAAGATGAACTGGTGGAGAGAGAATTCAATCGACTACTGGAATCT
ACATCTTATCTGTCTCACGTGCTTGGCTTCAATGCATTGTTTCAGAAACC
ACTGTCGCTTGGTAACGCTATTGAACTTGTCATTAAATTGATGGAGAAGC
AAGTTAAAGAGAAACAATGTGAACACAGCCAAAAAATTCTCGAGTTTCAA
AATCGTTTGAAAGAAGTACAGTTTGAGATGATCAAATTACGAGACCAGAT
TGAGAAAGCAAATATCGAGTGGAAACATGCTATCCAGCAGAAACCTCCAA
GAGACGTAACGGACGAATTCACAGTTCGAAGCAAACAAAGAGACTTGTTA
CAGTTATTCAAAGAACATGACGGTTACGCTGAGAAGCAAAAAGAACTAGA
AACGAAAATCAAAGATTACGAAGAAAACCCTCCAAGTGATGTATACTTAT
CATTACGCGATCGTCAGATTTTGGATTGGCATCTTGCAAACCTCGAATTC
GCCAACGCTACACCTTTATCCGCCCTTTCATTGAAACATTGGGATCAAGA
CGATGATTTTGAATTCACTGGCAGTCACATGACTGTTAGCAATGGCTTTT
CGTGTATCCCTGCTGCTCTAGCCGAGGGTCTAGATATTCGCTTGAATACT
GCTGTCCGAAATGTCAAATATACACGACAAGGTGTTGAAGTTGTAGGAGT
AACAAATAAGAACGGTATCCCGACAAGTCAAACATTCAAAGCAGATGCAG
TGTTGTGTACATTACCTTTGGGTGTATTGAAACATAAAAATCCACCCTCT
ATACATTTCAATCCTCCGCTTCCTGATTGGAAAACTGGCGCCATGGATCG
AATGGGATTCGGAAATCTTAATAAGGTGATTTTATGCTTCGACCGTGTCT
TTTGGAATTCAAGCACTAATCTCTTTGGCCACGTGGCCTCGACCACATCA
AATCGTGGTGAACTCTTCTTATTCTGGAGTATCTACAAAGCGCCCGTTCT
TTTGGCGTTAGTGGCGGGTGAGGCGGCAAACAAATTGGAAACCTATTCCG
ATGACGTTATCATTGGGAGAGCCTTGACCGTGCTCAAAGGAATTTTCGGA
AGTAATAATGTTCCTCAGCCAAAAGAGACGATTGTTACGCGATGGAAATC
CGACGAATGGTCACGTGGCTCTTATTCTTTTGTTGCTGCTGGTTCCTCTG
GCAACGATTATGACATCATGGCCGCCCCTGTAGTACCGCCCCCACCACCA
GAGAAGCCTGTCATTCCGGGTAGTAATATTCCGAGATTATTTTTCGCCGG
TGAGCATACTATACGGAACTATCCAGCAACGGTACACGGAGCTTTATTGA
GTGGTTTAAGAGAAGCAGGTCGAATTGCAGATCAGTTTCTTGGTCTACCT
TACGATTTGAATAAGTTCACTTAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_044329	XLOC_044329	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00071333-protein	TCONS_00071333-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_60	supercontig	scaffold_60:169275..177729 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.7005	13.0026	19.9665	16.9319	48.7662	40.2299	41.2019	44.9587	24.4779	32.1273	24.9757	16.3626	15.3105	14.6404	15.9469	18.8539	28.1291	23.2966	9.2724	12.8774	17.7588	18.4391	14.5165	17.2503	19.6943	20.4282	13.089	10.3409	11.2054	12.3735

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR023753	FAD/NAD-binding_dom
IPR007526	SWIRM
IPR002937	Amino_oxidase
IPR017366	Hist_Lys-spec_deMease
IPR011991	WHTH_DNA-bd_dom
IPR009057	Homeobox-like

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process
GO:0006355	regulation of transcription, DNA-templated
GO:0034720	histone H3-K4 demethylation

Vocabulary: **Molecular Function**
Term	Definition
GO:0016491	oxidoreductase activity
GO:0005515	protein binding
GO:0050660	flavin adenine dinucleotide binding
GO:0003677	DNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034720	histone H3-K4 demethylation
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0050660	flavin adenine dinucleotide binding
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0005515	protein binding

Blast

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BLAST of TCONS_00071333 vs. Swiss-Prot (Human)
Match: KDM1A (Lysine-specific histone demethylase 1A OS=Homo sapiens GN=KDM1A PE=1 SV=2)

HSP 1 Score: 905.975 bits (2340), Expect = 0.000e+0
Identity = 433/673 (64.34%), Postives = 539/673 (80.09%), Query Frame = 3

Query:  171 LEGSAFGARLPSDQMTAHEASCFQDISQGSTANQKKFLYIRNRIIQCWLSNPREELIVEHALAKIEPPFHDDPILTKRIHAFLDRYGSINIGVYKFHRSPPVLKNAPKILVIGAGMSGLTASRQLKSFGFEVVTLEARERVGGRVATFRQGPFIADLGAMVVTGLGGNPVTVISNQVDVKLTKIRQRCPLYECNGQMVRKDKDELVEREFNRLLESTSYLSHVLGFNALFQKPLSLGNAIELVIKLMEKQVKEKQCEHSQKILEFQNRLKEVQFEMIKLRDQIEKANIEWKHAIQQKPPRDVTDEFTVRSKQRDLLQLFKEHDGYAEKQKELETKIKDYEENPPSDVYLSLRDRQILDWHLANLEFANATPLSALSLKHWDQDDDFEFTGSHMTVSNGFSCIPAALAEGLDIRLNTAVRNVKYTRQGVEVVGVTNKNGIPTSQTF--KADAVLCTLPLGVLKHKNPPSIHFNPPLPDWKTGAMDRMGFGNLNKVILCFDRVFWNSSTNLFGHVASTTSNRGELFLFWSIYKAPVLLALVAGEAANKLETYSDDVIIGRALTVLKGIFGSNNVPQPKETIVTRWKSDEWSRGSYSFVAAGSSGNDYDIMAAXXXXXXXXXXXXXXGSNIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQFLGLPYDLNK 2183
            +EG+AF +RLP D+MT+ EA+CF DI  G    QK FL+IRNR +Q WL NP+ +L  E  L ++E P++ D +L  R+H++L+R+G IN G+YK  +  P  K   K+++IG+G+SGL A+RQL+SFG +V  LEAR+RVGGRVATFR+G ++ADLGAMVVTGLGGNP+ V+S QV+++L KI+Q+CPLYE NGQ V K+KDE+VE+EFNRLLE+TSYLSH L FN L  KP+SLG A+E+VI+L EK VK++Q EH +KI++ Q  LKE+  +M+ L+++I++ + ++K A + KPPRD+T EF V+SK RDL  L KE+D  AE Q +LE K+++ E NPPSDVYLS RDRQILDWH ANLEFANATPLS LSLKHWDQDDDFEFTGSH+TV NG+SC+P ALAEGLDI+LNTAVR V+YT  G EV+ V  ++   TSQTF  K DAVLCTLPLGVLK + PP++ F PPLP+WKT A+ RMGFGNLNKV+LCFDRVFW+ S NLFGHV STT++RGELFLFW++YKAP+LLALVAGEAA  +E  SDDVI+GR L +LKGIFGS+ VPQPKET+V+RW++D W+RGSYS+VAAGSSGNDYD+MA P+ P P           IPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQFLG  Y L +
Sbjct:  174 VEGAAFQSRLPHDRMTSQEAACFPDIISGPQQTQKVFLFIRNRTLQLWLDNPKIQLTFEATLQQLEAPYNSDTVLVHRVHSYLERHGLINFGIYKRIKPLPTKKTG-KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGGNPMAVVSKQVNMELAKIKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASEVKPPRDITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKLNTAVRQVRYTASGCEVIAVNTRS---TSQTFIYKCDAVLCTLPLGVLKQQ-PPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAPILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAP---QPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQFLGAMYTLPR 838

The following BLAST results are available for this feature:

BLAST of TCONS_00071333 vs. Swiss-Prot (Human)

BLAST of TCONS_00071333 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
KDM1A	0.000e+0	64.34	Lysine-specific histone demethylase 1A OS=Homo sap...	[more]

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TCONS_00071333 (transcript) - C. hemisphaerica