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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071336 ID=TCONS_00071336|Name=TCONS_00071336|organism=Clytia hemisphaerica|type=transcript|length=1555bp
AACTCGGGTATGAAAGATGGATGAAACCATGATTCATCAACTCTAGAGAA
GCTTCCATATAAGATGGTCTCTAGAGTCCTTCATAACGTAGGAAATCGCT
TGAATAGCATACGTAATAACTTTTCGACTCTTCTTTGCGGCTCCAGAAGA
GCTTCGAGAGATGAAGATAATGTTCGATTAAGATTCGTCTGCAGATCTTG
TGAAGATCACCTGAATGATGTTGCTGGTAGCAGTGCAAAGATTTGTCAAG
ATACCACCATTAGCTGTTCTTTTGAAAATCTATTGGACGCCAGTACCAAT
GAAGTCAATGTACAACTGCTTGTCAACCAGTTCAATACATTTTACATTGA
TAAATCGCATGGTGAGAAAGCAAAGGACTCGCCAGACATTGCCGAGAGTT
ATGAAAACTGTGTTTTTCATGAGAGTGAGGAGCACCATGACAAAGTGAAA
AAACCTTTATTTGCACCGCCAAATCTTGATATCAACATAGATGAAAATAA
CCAAGATCAGTCTTTAATCGATACTCTCCCACAGCACTATTACGGAAATG
CAGATCACGAAAGTGTTTTCACACAACACGCATCAGAGGGATGCGTGGAA
TTTGCAGATAGTGATAGTGAGCACGAATTATATATCTGGGCAGACAACAA
TCTTCCCTTATTAGATGAAATCGACAAAGAACTTGAGAAACGCAATCTTG
CTGACATAGCTAATGAGTTGTTGAGaaatGATTACGAAGATTTAGAGGTT
ATCACAGAGGAACCTTCTGCCAAATTAATCAACAATATGCCCGTTGAACA
AGATGAAGCCATGTTAATCACACAAAGAAACCAAGAGAATTCTCGAAAAG
ACCAGGAAAGGTTTaccaacaaaaaagaaaaaatgaagcattTGCAACAA
GAACTTTATTCTAATTCTTCAATGTTGAGCCACAATGGAATCTTATCTGA
ATTTTTCGTTGACATTTACAAAACGCCAGATGTAACAGATTTCATTGGCT
GCATTTCAACAATGATTGAGAAACATACATGCTCTCTTGCAGAAGGAAAG
TACGGTCCAGATGCAAAGATTTATCAAGACTTATTTGATGACTTAGTTAT
GCCTTTGATGCGCAAGTATTTTGACTTGGATGGAGATATTTTGTTGCGTG
CAGCAATAAAGGTTGCCAATGATTTAAAGAAGAGTGGCAAATTGTAAACc
agaatttttagaaaaaggaGTGCAAATTTAAAATGGGCCAGTGTAGAAGA
CCATAAAACATTTCCCAAAAAAGAGGAACAAATTATTCATATTTAAGGAA
ATTCAATCAATTGAATGAACATTATCATGGAAAGTGCTCAATACGTTAAC
GATCGCGTAAGCGTGAAACAGACTGAAGTAtctatgttttaatttttgaa
gaaaaataaatattttaatattggATTGATTGacataaaattttacttta
aagcttttttcacatgtacgtaaaattttacttagcCGTTTAGCCGTATG
TCCTACTTATTGAGATTATGTTACGTAGACTAAACAGAGGATAAACTTAT
CTGAA Run BLAST on NCBI protein sequence of TCONS_00071336-protein >TCONS_00071336-protein ID=TCONS_00071336-protein|Name=TCONS_00071336-protein|organism=Clytia hemisphaerica|type=polypeptide|length=377bp
MVSRVLHNVGNRLNSIRNNFSTLLCGSRRASRDEDNVRLRFVCRSCEDHL
NDVAGSSAKICQDTTISCSFENLLDASTNEVNVQLLVNQFNTFYIDKSHG
EKAKDSPDIAESYENCVFHESEEHHDKVKKPLFAPPNLDINIDENNQDQS
LIDTLPQHYYGNADHESVFTQHASEGCVEFADSDSEHELYIWADNNLPLL
DEIDKELEKRNLADIANELLRNDYEDLEVITEEPSAKLINNMPVEQDEAM
LITQRNQENSRKDQERFTNKKEKMKHLQQELYSNSSMLSHNGILSEFFVD
IYKTPDVTDFIGCISTMIEKHTCSLAEGKYGPDAKIYQDLFDDLVMPLMR
KYFDLDGDILLRAAIKVANDLKKSGKL Run BLAST on NCBI transcript from alignment at scaffold_60:214179..216095- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071336 ID=TCONS_00071336|Name=TCONS_00071336|organism=Clytia hemisphaerica|type=transcript|length=1917bp|location=Sequence derived from alignment at scaffold_60:214179..216095- (Clytia hemisphaerica)
AACTCGGGTATGAAAGATGGATGAAACCATGATTCATCAACTCTAGAGAA
GCTTCCATATAAGATGGTCTCTAGAGTCCTTCATAACGTAGGAAATCGCT
TGAATAGCATACGTAATAACTTTTCGACTCTTCTTTGCGGCTCCAGAAGA
GCTTCGAGAGATGAAGATAATGTTCGATTAAGATTCGTCTGCAGATCTTG
TGAAGATCACCTGAATGATGTTGCTGGTAGCAGTGCAAAGATTTGTCAAG
ATACCACCATTAGCTGTTCTTTTGAAAATCTATTGGACGCCAGTACCAAT
GAAGTCAATGTACAACTGCTTGTCAACCAGTTCAATACATTTTACATTGA
TAAATCGCATGGTGAGAAAGCAAAGGACTCGCCAGACATTGCCGAGAGTT
ATGAAAACTGTGTTTTTCATGAGAGTGAGGAGCACCATGACAAAGTGAAA
AAACCTTTATTTGCACCGCCAAATCTTGATATCAACATAGATGAAAATAA
CCAAGATCAGTCTTTAATCGATACTCTCCCACAGCACTATTACGGAAATG
CAGATCACGAAAGTGTTTTCACACAACACGCATCAGAGGGATGCGTGGAA
TTTGCAGATAGTGATAGTGAGCACGAATTATATATCTGGGCAGACAACAA
TCTTCCCTTATTAGATGAAATCGACAAAGAACTTGAGAAACGCAATCTTG
CTGACATAGCTAATGAGTTGTTGAGGTAATATTTTATCTGCACGAAAATA
TATTTATTCCTACTGTCAGTACACTTCACAAAGCACTTCCTTAGGAAGCC
TCCTTATATACAGGCAAAATTCAGAAACGTAGTACCCGGATGTCGAACAG
TTTTTCTACTTTCTTTAAAAATTTTATACATTATTCAAAGTGGTACTTCA
AATATATTCCCTTTTGTAATATAGTAGGAAAGTGCGTTTCTTATGCTGAC
AAAGCAAAATTAATAAATAAAACTATTTGCGGTCATGTGGTACAGAAGGG
AGAGAAAGTTGTTTTAACTTTTGTTTGAAATACAATCAAAAGGTTGTAGT
ACAATTAGGTAAAAATTCAGTTTAATTTGATTTTCAGAAATGATTACGAA
GATTTAGAGGTTATCACAGAGGAACCTTCTGCCAAATTAATCAACAATAT
GCCCGTTGAACAAGATGAAGCCATGTTAATCACACAAAGAAACCAAGAGA
ATTCTCGAAAAGACCAGGAAAGGTTTACCAACAAAAAAGAAAAAATGAAG
CATTTGCAACAAGAACTTTATTCTAATTCTTCAATGTTGAGCCACAATGG
AATCTTATCTGAATTTTTCGTTGACATTTACAAAACGCCAGATGTAACAG
ATTTCATTGGCTGCATTTCAACAATGATTGAGAAACATACATGCTCTCTT
GCAGAAGGAAAGTACGGTCCAGATGCAAAGATTTATCAAGACTTATTTGA
TGACTTAGTTATGCCTTTGATGCGCAAGTATTTTGACTTGGATGGAGATA
TTTTGTTGCGTGCAGCAATAAAGGTTGCCAATGATTTAAAGAAGAGTGGC
AAATTGTAAACCAGAATTTTTAGAAAAAGGAGTGCAAATTTAAAATGGGC
CAGTGTAGAAGACCATAAAACATTTCCCAAAAAAGAGGAACAAATTATTC
ATATTTAAGGAAATTCAATCAATTGAATGAACATTATCATGGAAAGTGCT
CAATACGTTAACGATCGCGTAAGCGTGAAACAGACTGAAGTATCTATGTT
TTAATTTTTGAAGAAAAATAAATATTTTAATATTGGATTGATTGACATAA
AATTTTACTTTAAAGCTTTTTTCACATGTACGTAAAATTTTACTTAGCCG
TTTAGCCGTATGTCCTACTTATTGAGATTATGTTACGTAGACTAAACAGA
GGATAAACTTATCTGAA Coding sequence (CDS) from alignment at scaffold_60:214179..216095- >TCONS_00071336 ID=TCONS_00071336|Name=TCONS_00071336|organism=Clytia hemisphaerica|type=CDS|length=1134bp|location=Sequence derived from alignment at scaffold_60:214179..216095- (Clytia hemisphaerica)
ATGGTCTCTAGAGTCCTTCATAACGTAGGAAATCGCTTGAATAGCATACG
TAATAACTTTTCGACTCTTCTTTGCGGCTCCAGAAGAGCTTCGAGAGATG
AAGATAATGTTCGATTAAGATTCGTCTGCAGATCTTGTGAAGATCACCTG
AATGATGTTGCTGGTAGCAGTGCAAAGATTTGTCAAGATACCACCATTAG
CTGTTCTTTTGAAAATCTATTGGACGCCAGTACCAATGAAGTCAATGTAC
AACTGCTTGTCAACCAGTTCAATACATTTTACATTGATAAATCGCATGGT
GAGAAAGCAAAGGACTCGCCAGACATTGCCGAGAGTTATGAAAACTGTGT
TTTTCATGAGAGTGAGGAGCACCATGACAAAGTGAAAAAACCTTTATTTG
CACCGCCAAATCTTGATATCAACATAGATGAAAATAACCAAGATCAGTCT
TTAATCGATACTCTCCCACAGCACTATTACGGAAATGCAGATCACGAAAG
TGTTTTCACACAACACGCATCAGAGGGATGCGTGGAATTTGCAGATAGTG
ATAGTGAGCACGAATTATATATCTGGGCAGACAACAATCTTCCCTTATTA
GATGAAATCGACAAAGAACTTGAGAAACGCAATCTTGCTGACATAGCTAA
TGAGTTGTTGAGAAATGATTACGAAGATTTAGAGGTTATCACAGAGGAAC
CTTCTGCCAAATTAATCAACAATATGCCCGTTGAACAAGATGAAGCCATG
TTAATCACACAAAGAAACCAAGAGAATTCTCGAAAAGACCAGGAAAGGTT
TACCAACAAAAAAGAAAAAATGAAGCATTTGCAACAAGAACTTTATTCTA
ATTCTTCAATGTTGAGCCACAATGGAATCTTATCTGAATTTTTCGTTGAC
ATTTACAAAACGCCAGATGTAACAGATTTCATTGGCTGCATTTCAACAAT
GATTGAGAAACATACATGCTCTCTTGCAGAAGGAAAGTACGGTCCAGATG
CAAAGATTTATCAAGACTTATTTGATGACTTAGTTATGCCTTTGATGCGC
AAGTATTTTGACTTGGATGGAGATATTTTGTTGCGTGCAGCAATAAAGGT
TGCCAATGATTTAAAGAAGAGTGGCAAATTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071336-exon-scaffold_60-1575043694:215371..216095 | TCONS_00071336-exon-scaffold_60-1575043694:215371..216095 | Clytia hemisphaerica | exon |
| TCONS_00071336-exon-scaffold_60-1575043694:214179..215008 | TCONS_00071336-exon-scaffold_60-1575043694:214179..215008 | Clytia hemisphaerica | exon |
| TCONS_00071336-exon-scaffold_60-1510915933:215371..216095 | TCONS_00071336-exon-scaffold_60-1510915933:215371..216095 | Clytia hemisphaerica | exon |
| TCONS_00071336-exon-scaffold_60-1510915933:214179..215008 | TCONS_00071336-exon-scaffold_60-1510915933:214179..215008 | Clytia hemisphaerica | exon |
| TCONS_00071336-exon-scaffold_60-1491911889:215371..216095 | TCONS_00071336-exon-scaffold_60-1491911889:215371..216095 | Clytia hemisphaerica | exon |
| TCONS_00071336-exon-scaffold_60-1491911889:214179..215008 | TCONS_00071336-exon-scaffold_60-1491911889:214179..215008 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_60 | supercontig | scaffold_60:214179..216095 - |
Blast
The following BLAST results are available for this feature:
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