Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071428 ID=TCONS_00071428|Name=TCONS_00071428|organism=Clytia hemisphaerica|type=transcript|length=1816bpRun BLAST on NCBI transcript from alignment at scaffold_60:1349202..1366689- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00071428 ID=TCONS_00071428|Name=TCONS_00071428|organism=Clytia hemisphaerica|type=transcript|length=17488bp|location=Sequence derived from alignment at scaffold_60:1349202..1366689- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Blast
BLAST of TCONS_00071428 vs. Swiss-Prot (Human)
Match: MEP1B (Meprin A subunit beta OS=Homo sapiens GN=MEP1B PE=1 SV=3) HSP 1 Score: 150.984 bits (380), Expect = 1.489e-38 Identity = 98/284 (34.51%), Postives = 131/284 (46.13%), Query Frame = 2 Query: 38 SIFLLFAAYVMVS-------CKKDGNSHDDIFDINQKMFKRAEXXXXXXXXXXXXNYKADDMLEGDIILTPKLKKYLNDQRDGKAISPFDAAVSKAWPKARVPYTFARGFSYTS--AVRQAIAEYNAKTCIRFVPRRSSDRSYVEFFHGGGCYSYIG-RVGGKQKISLGNGCGTKGVAIHEMMHALGFFHEQSRRDRDEYVSIQWQYIPGNIRYNFEKYRHGQADTLGAPYDKKSIMHYSNKAFSINGKPTIVSR-SDRNEILGQRDGLSVIDIKQLRKLYQCK 856 S FL A +++S DG DIFDIN+ + D+ EGDI L D I WP +PY + + A Y KTCI F P + + +Y+ F G GC+S +G R GKQ++S+G C HE +HALGF+HEQSR DRD+YV I W I +NF Y +D+L PYD S+MHYS AF +PTIV+R SD +++GQR S D+ +L +LY C Sbjct: 7 SWFLFLDALLVISGLATPENFDVDGGMDQDIFDINEGL--------------------GLDLFEGDIRL------------DRAQIRNSIIGEKYRWPHT-IPYVLEDSLEMNAKGVILNAFERYRLKTCIDFKPW-AGETNYISVFKGSGCWSSVGNRRVGKQELSIGANCDRIATVQHEFLHALGFWHEQSRSDRDDYVRIMWDRILSGREHNFNTYSDDISDSLNVPYDYTSVMHYSKTAFQNGTEPTIVTRISDFEDVIGQRMDFSDSDLLKLNQLYNCS 256 The following BLAST results are available for this feature:
BLAST of TCONS_00071428 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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