TCONS_00071429 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00071429
Unique Name	TCONS_00071429
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2097

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_60:1359972..1366705-

transcript sequence

>TCONS_00071429 ID=TCONS_00071429|Name=TCONS_00071429|organism=Clytia hemisphaerica|type=transcript|length=2097bp
TTCGATCAGAGTAAAATTTCAAAGGGTGGAGCAAACGATCGGAGAAAATG
AAATCGATTTTTCTTCTATTTGCAGCTTACGTCATGGTAAGCTGCAAGAA
AGATGGTAATAGTCATGATGACATTTTCGATATCAAtcagaaaatgttca
aaagagCAGAATCAAAAACAAGCTCATTTTCTGGTTCAAAAGGAAGCAAC
TACAAAGCGGATGACATGCTTGAAGGGGACATTATTCTAACTCCAAAGCT
AAAAAAATACTTGAACGACCAGAGAGACGGAAAAGCTATCAGCCCCTTTG
ATGCTGCTGTCAGCAAAGCGTGGCCTAAGGCTCGCGTGCCGTACACTTTC
GCCAGAGGCTTTTCATACACGTCTGCTGTTAGGCAAGCCATCGCAGAATA
CAACGCCAAAACCTGTATTCGTTTTGTACCAAGAAGATCTTCTGATCGAA
GCTACGTTGAATTCTTTCACGGTGGCGGTTGTTATTCTTACATTGGACGT
GTCGgtggaaaacaaaaaatttcattgGGTAACGGATGTGGAACCAAAGG
CGTCGCTATTCATGAAATGATGCATGCTTTAGGATTTTTCCACGAACAAA
GTAGGAGAGATCGTGATTCATACATTCAAATTATGTGGCAAAACATCCCC
GGACGTGTCAGATACAATTTCGAAAAATACAAACACGGACAAGCTGAAAC
TTTGGGACAACCCTATGATAAGAAATCTGTTATGCATTATGGAAACTATG
CCTTTTCAACGAACCGACAAAAAACAATTGTTTCAAGATCTAACCGTAAT
GAAGTTTTGGGACAACGACGTGGCTTGAGTACCATCGATGTCCGACAGTT
AAAGACGATGTACAAATGTGGTGGTACCAAACCTGTACGACCAACAACAA
GACCAACAACAAGACCAACTACTGGAGACTGCAAAGACAAATACAGCCTT
TGCTCAACATTGGCCGGACAAGGATTCTGTCGCGTCACTTTTACGTCATG
GATGAAAAACAACTGCAAGAAATCTTGCAAGAAATGTCCAACTAAGCCTT
CATTACCGAGATGTAAACCACACAAGAATTCAAGACATTGTGGAAGTTGG
CAAAAATCAGGTTTTTGCAGTGGGCGATATGCAAATTTCATGGGAAACCA
CTGTTATCAGTGCAAGAAATGTCGAAGATAATGCAATCCGTCCATTGAAA
ATGTACCTTACAACAATATGTCCATTAAACACTATTCTGATGTTCTGggc
attgggcttttccagaaatagtccgtgccccctgttgaggatattggata
tccagggggctaacgatttttgttcaaaagtggatatccaggaggTTAAA
TATCTAAAAGGGAGAGAATACCCAGGGGGTAAactgtcttttcaagtaaa
aaatatgatatccaggggtaaacatctgtataagagaggatatccagggt
gttaagcatatttttaagagtggatatccagggggtctttactaataaag
taggatatccagggggttcgaaacttcgaaaaatcaatatccttaACAGT
GGGAGTAaattctggaaaagcccatcaGATGGATGTAATCTTGACCTTGA
TTTCAAAGGTTACATAAAATGTCATCCTGTAAAATACCTTTAGTCTATTT
TAGTGTTTCTTTTgtaatatttgtattttttttcggGAATTAATTAATTT
AGGGTGCTTGCGGTGAGTGCAAATGAATTGTTGCCGACAAATTTCGAGTG
AAAAATTTGGCTCTCTTCGACTAATTAGCACACATTAGAGCAGTTGTTGG
AGATGTTTTATTTTGGTCTAAATAATAAATCTTATATCGTCactaaattt
agaattttttaaaaagttatatGAATTTATACGATTAAATATTATATTGA
CCACCAGACGTAAAAAGGTGATTCAAATAAATGAGGAATAAATATTTTGC
ACTCTATAGACCTTGTTTACGATTTCATGCCTCTTGATCGTAATTTGATC
ACATACTATCCAATAACCTAGACAGACATTGGAATTATGAAATGTTTATC
CAAGTTTGACTTAACGCTTTTAAATGAATATACCCAGGTTATGATTG

Run BLAST on NCBI

transcript from alignment at scaffold_60:1359972..1366705-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00071429 ID=TCONS_00071429|Name=TCONS_00071429|organism=Clytia hemisphaerica|type=transcript|length=6734bp|location=Sequence derived from alignment at scaffold_60:1359972..1366705- (Clytia hemisphaerica)
TTCGATCAGAGTAAAATTTCAAAGGGTGGAGCAAACGATCGGAGAAAATG
AAATCGATTTTTCTTCTATTTGCAGCTTACGGTATGAATTTCTTCTTTTT
CAGAATATTTGTTGCTTAGCCAACTTGAAGGTGAGTCCGTGATAGAAATT
TGGGTTCCACGGCCAATTTTTCCGATTTCGCACCGTTTTTGTGCTTTTAG
GGGGGGGGGATCGTCATCTGAATTTTGCCACCGCTCAAAATAGTGGCTTC
ATCTATCTTCTTTAAGGAATTCAATCTCAGCATTGTTTTACCATAATATA
CTTTTTCGTTCAGTCATGGTAAGCTGCAAGAAAGATGGTAATAGTCATGA
TGACATTTTCGATATCAATCAGAAAATGTTCAAAAGAGCAGAATCAAGTA
AGTTTTTAAACATTTGTTTCTCAGGCGTTTTCATTTTCCAAGCCTTTTAT
AAAACTCTTTTACTTATGACTGAACTCGCAATTAACGATGTTCGATAGCA
GCACCCTGTTTTTTTAATCATATCACGATCACGAAATTTGTCCATCGCCC
AAAAATAGCGAAAGATTTTAATTTAAGTATCACGCAAAAATTTTGATCAC
ACCGAAAAGAAATTTGGAACCACTCAATCATACAAGAACAAAGCCCCAAT
CACACCATAATCATGTAAATTTTTGAGGCTGTCTCCTTAACCCACATGTT
ACCCAATTTAAATACTTACTTAAAAAATTTATCATATCTTCATCCATGAT
TTTGACCGCTTCCTTATAGAGCCTCGATTTACCATCAGATTTATCATCAG
ATATATTTCTAATTTTTACAATCGGTTGGCTGTACTGACTTTATGCAGCA
TGCTACCATACACACCCCTGTCTCACAGCCCCGGTGGAACTTTTTTCCTC
AGTGGGGATAAAAATTCATATTGAAATCCCAATGGGGATTGTTCAAAGGT
TAAAAAATCCAGCCGGGATGGTTTTGGAGTTGAATTTTTAAACATTTATT
TCGAGTGGGGATGAAATATAACTCAATTCCCAGTAGGGCTAAAATTCCAG
GGTATTTTCCTACCAGAGACAAAACTTTTGCCAGATTTTTCAGTATGGCT
GGGGTCCCAGTGGGTCTGTGACACAGGGGTGTCATACGAATAATGCGTTG
GATATCAGAACATAATCCTTCTTATTCGCCTTTCTTTGTTACAGAAACAA
GCTCATTTTCTGGTTCAAAAGGAAGCAACTACAAAGGTGAAGACCGATTT
AATTTTAGACTAAGTTACCCATTTTTCCCTCTTTTCTTCTCTTTTTTTCT
CTTTGTAATGAATATTTTTAGTTCCCACTAATTGCGGATTAAATTTCATT
AATTACATGATACAATATTGAATAGGGTGACTTTTGGCGGTTTGTTTCTC
AAGGGTACTTTCAGTTTTACATTAAGTTTTATTCGACATTCTTATAGCAC
TCACATACACATTGCCTCAAAATAACTGCTCTTATGACCATAGTATTTAT
TGGCCTATGGGCACGCAACGTCTTATCGACATCCCATGGACGGCTTTAAG
ACCTTTGGACGTCCTAGAAACGTACATTAGACGTCCAAAAGACGTTTGTG
CCCATTGTGATTCCTGAAAAAGAAGCTTGATTGGTAATTTGTGAAATCTT
AGATCAATTCATTTTCTTTTTGTTCCTCAGCGGATGACATGCTTGAAGGG
GACATTATTCTAACTCCAAAGCTAAAAAAATACTTGAACGACCAGAGAGA
CGGAAAAGCTATCAGCCCCTTTGATGCTGCTGTCAGCAAAGCGTGGCCTA
AGGCTCGCGTGCCGTACACTTTCGCCAGAGGCTTTTGTAAGTCAATTTCA
TTTGTTGATTTCAATTTTTTAAGTTCTGTTTTGTAATCAAAGTAACAAGA
GAGACAAATACGAAAAAGAATTTAGAATGACGGATGCAAAAATGCAGATT
CAGGTCTCAAAATTATTCCTTGATTATAATATCTCCTCGCCGAATAGTTT
TGTTATTTTGTATTTCACTTTCAGCATACACGTCTGCTGTTAGGCAAGCC
ATCGCAGAATACAACGCCAAAACCTGTATTCGTTTTGTACCAAGAAGATC
TTCTGATCGAAGCTACGTTGAATTCTTTCACGGTGGCGGGTATGTGAAGT
ATTTTTACGCTTTTCTTATGACATCTTCAATGTTAAAAGTCTAGTACCGT
CTGCGTCTCGGTTCATTTCATGTAAAACAATCCAGGGGGCAGTGGGTTTA
CCAACTGATGGTATGTGCGGCGAAAAGAATGGATTTTAGAATCGCACCTT
TACAGTGCAGAAAAAAATCGGTGAAATTCATACCCTTACAGTGCATTTTT
TCAAATTTTAAACTCTTTGAGAGCAAAAAAATCAAGATTTTCCAGCAAAA
GTTAGCAATTTTTCCTAGATTTGCTGAAATTTCTACCCATACAGTGCAAT
AGTGCAATTATCAAAAGTCCACCCTTACAATGCATTTCTGATACTTTGAA
GAACATACCCTTAACTGCTGCACATACCCGTCGGTCAATTTGCCTGACTG
CCCCCTCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
CTCCCCCCCCCCCCCCCCCCCCCGGGAAAACATTTTGCAAAACTATTATA
ACCTCCAGAACGTCGATTTTCCTCTAATCCAAACTTTCAGTATCCAAATT
ACTCTGTAAGTCGTACTAAAAGTTAAATCCTTGATTGGAGTTCTTCTCTA
AGATAAAGTTACGTTGAGTTAGAGAGAAGTAAGGTCAACTGAAGTATCTC
ACACTATAATAATAATAATGTCTTTTGATTCACAGTAATGACTTTTGAAT
CACCATAGCATTTCAAGAAATCGATTTTAACAAAGAATTTCTATCTTTAG
TTGTTATTCTTACATTGGACGTGTCGGTGGAAAACAAAAAATTTCATTGG
GTAACGGATGTGGAACCAAAGGCGTCGCTATTCATGAAATGATGCATGCT
TTAGGTGAGGAAGGTTTACTCGGTACCTAATAAGCGGGGGGTTTTGAATA
AGCGGGGTGATTGGAAAAATTATAAGCGGGGTGGGGGTTGGAATAAAAAT
GTCATTGGTGGGAATTTTTTGAATTAGGGCAAGACCATGGGAGTTGGAAT
AAGACTTGGAATAACAGTGTAAATCTTTGAAAAATCAATTAGCGGGGGAG
GGGACGCTTATTAGGTAGCCGAGAGTAAGTCTTATTCCAATGATACATTT
CACATTTCTATCGTATAAGCCAGTCATCATTTTTAATACAGTTTGTGGAT
CTTTGATCAATGAAGGGATAATTAACCGATTCGAAAAACGTCCAAGATGT
CCAAAATAATAAGCCAAAATTTTCCCAGCTTGGACTGGTGATTTACCCCG
CCCTCGTTTTCTCCCCTGTTACGGTCCTTCAAAAGTTCAAACCATAATTT
CATATGACTGTGGTGTCTATGCTGCGTCTTATCCCCTTCGTCTAGAACTT
GAAACAGAGTGGTTTTAAGTATAGAACTGGCTCTATAATGTTGACTTACT
TGTTATCTTTTCCAGGATTTTTCCACGAACAAAGTAGGAGAGATCGTGAT
TCATACATTCAAATTATGTGGCAAAACATCCCCGGACGTAAGTTTGTTTT
ACAGTGGTGTCTCCATAACTCGAACACGCATGGGAAACTCGAATTTGTTC
GAGTTAAGGGAATTTCGAGTTACGGAGTAAGGTTGATAAAAAATCAGTAA
CTGAAGGGACAGGAAAACTTGTTCGAGTTAAAGAGACTTTATTGTATTTA
TATTATATTATTATGTCACTAAAATAACTATACTACTATACCTAGGTTGA
TTTCTATAATAACATTTGACTTTACTTCAGGTGTCAGATACAATTTCGAA
AAATACAAACACGGACAAGCTGAAACTTTGGGACAACCCTATGATAAGAA
ATCTGTTATGCATTATGGAAAGTAAGTTATAAATCATTACATGTTACGTG
TTGTTATTACATTAACATTCTATTGAATGTTTAGATACCATTGTATATTA
CCCCTGTCTCAATTTACTTTTGACTCACCGTTGGCGTTGATGAATAAAAT
CCTATTGTAAAATTGTGACGATTTACTGGCCTTGCTAAGTACGAATAAAA
CACAGGGTTAGCAAAAGTTTCTTAAGTCTCTTACTTTGTTCAACCAAATT
CTCTGTTCTCCAAATTACAAGTCCCCAACTCTGCATAAATAAGTTTTAGT
TTATCGACCCAATGATATTCATATTGGAAGTTTATCGTAGCTTGGATCAC
GATATTTACGTTTGGCTACGTTTAGAGAGATTCCTCTCCCTATATTACAT
CCTTTCAATCACACTTTGAGATCTTTTACTTAAGACTTTCAACTCTCTGC
GTTTCAGCTATGCCTTTTCAACGAACCGACAAAAAACAATTGTTTCAAGA
TCTAACCGTAATGAAGTTTTGGGACAACGACGTGGCTTGAGTACCATCGA
TGTCCGACAGTTAAAGACGATGTACAAATGTGGTGGTACCAAACCTGTAC
GACCAACAACAAGACCAACAACAAGACCAACTACTGGAGGTTAGTATTTC
CCCAACTGACACTAAAATTGTTTAAAAACGTCCGAAACGTCCGAAACGTT
TATACGGACATGTATTTAAATACAAAATCCCTGTCTCAGTGATTTGGTAA
AAGTTCTTTTAGCCAGGGGGATAAAATGACGATATAACTATAAAATTATG
AAATTACATCTCGAAATAGATGTAAAATCACCTGTTCGCTGCCGACTAAA
AATTTTGGTGTCTAAAGCTCAGATATTCAGGAAGGATTTTGATTTTCTGA
ATGAGGATGAGAGTTCAGTGAGAGTTGAAATGGGGACAAAATTTCTTGCC
GAGCGACTATTTTTCAGCTAAATTTTCTAGTATTCCTGTCTCTGTGAGGA
GGGACTGCGATACGGGAGTGTCTGATAAATGATAAAATCATGTCAATATT
ATGGTTTAAACCTTTACTAAAGTATTACCTTAATGAACACGTATTACCTA
CACCCAGCCAAAAAACCGTAAAAGTAGGGTGGCTGAAGGCTCAAAATGTG
ATAAATCCGCTAGGAATAGACCTTTTCATAAATTACGTCACAAACATCAC
TTACCTCGTATTCAAACAATTACCATAGTGATTATGTCCCTTGAGACATT
AAATGATTTTTTTTATGAACTGAAAATAGTTTTAATAAAATCCCCTGGGA
GTCAATCGCCAAAACAATAATTTCAAAACGAGGCAAGTGATGTTCGTAAC
GTAATTTATGAAAAGGTCTATTTGAGAAAAAAATCTCATTTGCTCAAAAG
TCGGGAGGCTGAAGTCTCCCCAGTCCCCCCGTTTCCGCACTCAACCCACT
CATTCCGTGGATTCCAGTGTACACAATTAAATAAATGTCCTAAATAAATG
GACTATAAATAAAACGTCAACCCTGTCTTTCCATTGTAAACACTTTACTC
TTGTTTTATTCTAGACTGCAAAGACAAATACAGCCTTTGCTCAACATTGG
CCGGACAAGGATTCTGTCGCGTCACTTTTACGTCATGGATGAAAAACAAC
TGCAAGAAATCTTGCAAGAAATGTCCAACTAAGCCTTCATTACCGAGATG
TAAACCACACAAGAATTCAAGACATTGTGGAAGTTGGCAAAAATCAGGTT
TTTGCAGTGGGCGATATGCAAATTTCATGGGAAACCACTGTTATCAGTGC
AAGAAATGTCGAAGATAATGCAATCCGTCCATTGAAAATGTACCTTACAA
CAATATGTCCATTAAACACTATTCTGATGTTCTGGGCATTGGGCTTTTCC
AGAAATAGTCCGTGCCCCCTGTTGAGGATATTGGATATCCAGGGGGCTAA
CGATTTTTGTTCAAAAGTGGATATCCAGGAGGTTAAATATCTAAAAGGGA
GAGAATACCCAGGGGGTAAACTGTCTTTTCAAGTAAAAAATATGATATCC
AGGGGTAAACATCTGTATAAGAGAGGATATCCAGGGTGTTAAGCATATTT
TTAAGAGTGGATATCCAGGGGGTCTTTACTAATAAAGTAGGATATCCAGG
GGGTTCGAAACTTCGAAAAATCAATATCCTTAACAGTGGGAGTAAATTCT
GGAAAAGCCCATCAGATGGATGTAATCTTGACCTTGATTTCAAAGGTTAC
ATAAAATGTCATCCTGTAAAATACCTTTAGTCTATTTTAGTGTTTCTTTT
GTAATATTTGTATTTTTTTTCGGGAATTAATTAATTTAGGGTGCTTGCGG
TGAGTGCAAATGAATTGTTGCCGACAAATTTCGAGTGAAAAATTTGGCTC
TCTTCGACTAATTAGCACACATTAGAGCAGTTGTTGGAGATGTTTTATTT
TGGTCTAAATAATAAATCTTATATCGTCACTAAATTTAGAATTTTTTAAA
AAGTTATATGAATTTATACGATTAAATATTATATTGACCACCAGACGTAA
AAAGGTGATTCAAATAAATGAGGAATAAATATTTTGCACTCTATAGACCT
TGTTTACGATTTCATGCCTCTTGATCGTAATTTGATCACATACTATCCAA
TAACCTAGACAGACATTGGAATTATGAAATGTTTATCCAAGTTTGACTTA
ACGCTTTTAAATGAATATACCCAGGTTATGATTG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_044369	XLOC_044369	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_60	supercontig	scaffold_60:1359972..1366705 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.128374	0.371201	0	0.0921138	0.55354	0.766283	16.63	16.3343	43.9654	27.661	74.4136	54.3538	13.5792	5.69074	11.1004	6.31932	162.381	341.26	1.43452	2.01744	344.724	354.48	224.559	238.395	201.916	175.253	44.682	46.7431	128.876	135.434

Blast

[Close]

BLAST of TCONS_00071429 vs. Swiss-Prot (Human)
Match: MEP1B (Meprin A subunit beta OS=Homo sapiens GN=MEP1B PE=1 SV=3)

HSP 1 Score: 147.902 bits (372), Expect = 5.476e-37
Identity = 95/286 (33.22%), Postives = 130/286 (45.45%), Query Frame = 3

Query:   54 SIFLLFAAYVMVS-------CKKDGNSHDDIFDINQKMFKRAEXXXXXXXXXXXXNYKADDMLEGDIILTPKLKKYLNDQRDGKAISPFDAAVSKAWPKARVPYTFARGFSYTS--AVRQAIAEYNAKTCIRFVPRRSSDRSYVEFFHGGGCYSYIG-RVGGKQKISLGNGCGTKGVAIHEMMHALGFFHEQSRRDRDSYIQIMWQNIPGRVRYNFEKYKHGQAETLGQPYDKKSVMHYGNYAFSTNRQKTIVSR-SNRNEVLGQRRGLSTIDVRQLKTMYKCGGT 878
            S FL   A +++S          DG    DIFDIN+ +                      D+ EGDI L            D   I          WP   +PY         +   +  A   Y  KTCI F P  + + +Y+  F G GC+S +G R  GKQ++S+G  C       HE +HALGF+HEQSR DRD Y++IMW  I     +NF  Y    +++L  PYD  SVMHY   AF    + TIV+R S+  +V+GQR   S  D+ +L  +Y C  +
Sbjct:    7 SWFLFLDALLVISGLATPENFDVDGGMDQDIFDINEGL--------------------GLDLFEGDIRL------------DRAQIRNSIIGEKYRWPHT-IPYVLEDSLEMNAKGVILNAFERYRLKTCIDFKPW-AGETNYISVFKGSGCWSSVGNRRVGKQELSIGANCDRIATVQHEFLHALGFWHEQSRSDRDDYVRIMWDRILSGREHNFNTYSDDISDSLNVPYDYTSVMHYSKTAFQNGTEPTIVTRISDFEDVIGQRMDFSDSDLLKLNQLYNCSSS 258

The following BLAST results are available for this feature:

BLAST of TCONS_00071429 vs. Swiss-Prot (Human)

BLAST of TCONS_00071429 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MEP1B	5.476e-37	33.22	Meprin A subunit beta OS=Homo sapiens GN=MEP1B PE=...	[more]

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TCONS_00071429 (transcript) - C. hemisphaerica