TCONS_00071436 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071436
Unique NameTCONS_00071436
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1390

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071436 ID=TCONS_00071436|Name=TCONS_00071436|organism=Clytia hemisphaerica|type=transcript|length=1390bp
CGTAAATATCGCAAGGATATGTCATCAAATAGAAACATCAACCTTGGTCC
CAGGCTCTTCATTAGTAAAGGTTTATTATAGAGATTGAGCACTGGGAACT
AGGTTGGACGAAATGGGTTTTGGCCAAGAACCATAAATAGGAAACCATTT
GGCAAAGAAAACCATAGATTCGCAGAGAAGTTCTACATAGTTAGTATAGC
TCTGTAGAATcaataaaatgaagattcttgTACTTGCTGTGGTACTTTTT
GCTTTTGCGTGGTGCAAGAAGAAGGACGGCAACAACCATGATGATATTTT
GGATACCAATCAAAAAATGTTCGAACGAGCTAAAAAAGgaaCAAGTGGAT
TctcaggaaaaaagaaattgataaaAGAGGAAGATATGCTTGAAGGTGAT
ATTGTTTTAACTCCAAAGCTAAGAAAATACTTGAACAACCAGAGAGACGG
AAAGGCTATCAGCGCCTTTGATGCTGCTGTCAGCAAAGCATGGCCTAAAT
CAGGCCCTTATGCTCGCGTACCGTACACTTTCGCCAGAGGCTTTTcATAC
AAGTCTGTTGTTGGGCAAGCCATCGCAGAATACAACGCCAAAACTTGTAT
TCGTTTTGTACCAAGAAGATCTTCTGACCGAAGCTACGTTGAATTTATGC
ACGGGGGAGGTTGCTACTCAATGATTGGTCGTGTCGGAGgaaaacaacaa
atttcatTGGGTAACGGATGTGGAACCAAAGGTGTCGCTATTCATGAAAT
GATGCATGCTTTAGgatTCTTTCACGAACAGAGCAGAAGAGACCGTGATT
CATATATCACAATTAATTGGAATAATATTCCAGGACGTGTCAGATACAAT
TTCGAAAAATACAGACATGGACAAGCTCAAACTTTGGGACAACCCTATGA
TAAGAAATCGGTTATGCATTATGGAAACTACGCTTTCTCTACGAACCGAC
AAAAAACAATTGTTTCGAAATCTAACCCAAATGAAGTTTTGGGACAACGA
CGAGGCTTAAGTACCATCGATATCCGACAGTTAAAGACGATGTACAAATG
TGGGGGTGTTAAGCCCATCCCAACTCAAAGACCGCCCACCACTGGAGaCT
GCAAAGACAAATACAGCCTTTGCTCAACATTGGCCGGACAAGGATTCTGT
CGCGTCACTTTTACGTCATGGATGAAAAACAACTGCAAGAAATCGTGCAA
GAAATGTCCAACCAAGCCCTCATTACCGAGATGTAAACCACATAAGAATT
CAAGACATTGTGCAAGTTGGGCACGTTCAGGCTATTGCACCAATCGTCGG
TATGCAAGTTTCATGGCAGGCCACTGCTCTTCTTGTAAAAAGTGTATTTA
GGAGAGAGACAGACCATCAAAGACTTTACTTCAATATTGC
Run BLAST on NCBI

protein sequence of Putative secreted metalloproteinase

>TCONS_00071436-protein ID=TCONS_00071436-protein|Name=Putative secreted metalloproteinase|organism=Clytia hemisphaerica|type=polypeptide|length=377bp
MKILVLAVVLFAFAWCKKKDGNNHDDILDTNQKMFERAKKGTSGFSGKKK
LIKEEDMLEGDIVLTPKLRKYLNNQRDGKAISAFDAAVSKAWPKSGPYAR
VPYTFARGFSYKSVVGQAIAEYNAKTCIRFVPRRSSDRSYVEFMHGGGCY
SMIGRVGGKQQISLGNGCGTKGVAIHEMMHALGFFHEQSRRDRDSYITIN
WNNIPGRVRYNFEKYRHGQAQTLGQPYDKKSVMHYGNYAFSTNRQKTIVS
KSNPNEVLGQRRGLSTIDIRQLKTMYKCGGVKPIPTQRPPTTGDCKDKYS
LCSTLAGQGFCRVTFTSWMKNNCKKSCKKCPTKPSLPRCKPHKNSRHCAS
WARSGYCTNRRYASFMAGHCSSCKKCI
Run BLAST on NCBI

transcript from alignment at scaffold_60:1384459..1393786-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071436 ID=TCONS_00071436|Name=TCONS_00071436|organism=Clytia hemisphaerica|type=transcript|length=9328bp|location=Sequence derived from alignment at scaffold_60:1384459..1393786- (Clytia hemisphaerica)
CGTAAATATCGCAAGGATATGTCATCAAATAGAAACATCAACCTTGGTCC
CAGGCTCTTCATTAGTAAAGGTTTATTATAGAGATTGAGCACTGGGAACT
AGGTTGGACGAAATGGGTTTTGGCCAAGAACCATAAATAGGAAACCATTT
GGCAAAGAAAACCATAGATTCGCAGAGAAGTTCTACATAGTTAGTATAGC
TCTGTAGAATCAATAAAATGAAGATTCTTGTACTTGCTGTGGTACTTTTT
GGTGAGTGAAGCCATTTTTTGGATTTGATTTCTAATACTGTATTCTTCTA
ATTTTCACAGCTTATTTCCTATTTCGCCTGAAAAAAGTCATCAAAGTGAA
TATACAAATTGTAATATTTATTCAAATTTGGCGTAAAACCAAACTATTTA
GCTCATACTTTAAATGCACTTTATTCAAAATCACTTCCATCGAAAAGTAT
AACTGCAACCTTTTAAGTCCACAGATAAGGCTGTAGATAGAGTAAACTGT
TAAGAATATTTGGTCTTTTTCAGCTTTTGCGTGGTGCAAGAAGAAGGACG
GCAACAACCATGATGATATTTTGGATACCAATCAAAAAATGTTCGAACGA
GCTAAAAAAGGTATATATGACGTTGTATTGTATATGAGGTGTATAAGATT
TTTATAAATTACTCCAACCTGAAGATTTAAAAGGTATCAGATTTTTATAT
CGACCATCAGATCTTTAAGGCTTTTGATTAGATAATTCTTTTTTCTTTCA
GGAACAAGTGGATTCTCAGGAAAAAAGAAATTGATAAAAGGTAAGCTAAA
CTAATAGATAATCCAGGTGTAGTGGTGTGGTGGTCATCGCTCTTAATTCC
CGTCTGGAAGGTCCTTGAACATTCCGCCCACAGCGTGTTTCAACATTCAT
CTAGCATTTTATGTTCTCTGTGAACATTTTGAAACAACGTTTTGTGAGTT
AAATATTGAAACCGATTCAATTCAAACCGATTTGGATATTAATCTTCATT
ATAACATTAATTAAGGCTAATTTTAAGATTTGAAGGCTTCAACAATTTAG
AAAGGTACAGTCCCTGAACCATCGAATGGACCATTCCATTATATATCCAT
AAAGAAGGTGGATGATCATTTTCAGGGGGTAACCTGAGAAGAGTTTCCAG
GGGGTAAAAGACTGATTAAGTTAGTCCAAAGTCACTTTCAGGTTTGAAAA
AAAGATTTTCCAAGGTTTTTTTTTTCCTAATTTCGCAATTTTCCACGAAT
TTCAAAGAATTTTTATGGACTTGAAAAAGTTCATCTACCCCCTGTATATG
GGTTCTTAATGGAACGGCCCAATGCAGGTCTCCAACAGAATGCAGGTACA
TTATACTTTCTTTTTTTTACTGTTCAGAGGAAGATATGCTTGAAGGTGAT
ATTGTTTTAACTCCAAAGCTAAGAAAATACTTGAACAACCAGAGAGACGG
AAAGGCTATCAGCGCCTTTGATGCTGCTGTCAGCAAAGCATGGCCTAAAT
CAGGCCCTTATGCTCGCGTACCGTACACTTTCGCCAGAGGCTTTTGTAAG
TCAAATTCATTTCCTTGGGAATGTTTATATGTTCAATCGAACAAGTTGAT
TTTTAAATACAGTTGACGGTCTCCTATAATTCGATCTTCAAGGGGAATTG
GATTTTCATCGAATAAGGGAGCGTCGTTTATGAGAGTTTCTTGTTGGCGG
GGACTTTAAATTTCATCGAATAAGAGAGCCTATCGAATGGTAGAATGTCG
AATTAGAGAGCGTCAACTGTAGCTTTGGGCCTTTGATGCTGCTTGAAGAG
TACCATACAGTTCGCCCTCGGAATAATGAATCTGAAGCATGCATGAAAAA
TGATGGATCTTCATGTAGCACTCATTCTATTTATTGAAAAAGTGGAAAGT
TTTGAGAAAATTATGGAATTTCAATGAGTGGAGCCAACGTACCAGGACTA
AATAATGAAATGTTTCTTTCAGCATACAAGTCTGTTGNTCAACGTACCAG
GAATAAATAATGAAATGTTTTTTTCAGCATACAAGTCTGTTGTTGGGCAA
GCCATCGCAGAATACAACGCCAAAACTTGTATTCGTTTTGTACCAAGAAG
ATCTTCTGACCGAAGCTACGTTGAATTTATGCACGGGGGAGGGTAGGTGT
TGTGTAATACACCTGTTCGACCGTAGCTGCCCATTGCCGCGCGGGCATTT
TTATGCTCGTTTTACCACCCTATAAACGTCCCAGTGTTTTTTTTGCACCT
ATAGACAATAGAAAAAGGTGTAAAAAAGGATTGGATCGAGTTTAGGGTGA
TAAAATGGGAAAAAAATGCCTGCGCGCAATTGGGGGATAAGGGCGAAAAG
GTGTATTCCTTTCAAAAGAAAATCGTATATTTTTACATCATACCTTTATT
ACATCGCGGCTAATTTAATTTAATTTAATTACAATCGTGGACAAAATATT
TGAGACAAAGGGGATATCCCGGCGAAATTTTAAACAACACAAATGATTTT
TCAGCGTCTTAAACTACAATTGCGGAAAGTAGAGTTTTAACTCTGAGTTT
TAGAATCTCAGGATTTAAAAGCTCAAATTTGCTCGAATAAGGCTTGGAAT
ATAGCCTAGAAGCCACTGAACCCCTCTAAACTCGAAATATTCAATGAAAG
AAAGTGGAAGTGCTAAAATAGCAATTCTCGCCCGAATTTAAATTCTGAAA
AACATTAAAATACACTAAAGTGTCAATATATTTCGACCATAATTGTAGAT
CGCAATATTAAAACTTCATTCACAAAAAAACCTTGAAGACACTTTTTTCG
AAGTAAGTTTTTGAATCGTTTCTAAAAAATACAGTGGAGTTTCTATAAAT
CGAGCACGTACGGGAAACTTAATTTTTTTGGGAGTTATGTAGATTAGTTT
ATAAGGCATTGTTTAGTGAAGGGACAAAAATCATTTTTGGACCTACCTCC
GGGTACCCCGGTGGAGGTTCTATAAATTAACCCATGTCCGTTCGTTCGTC
CGTTCGTTCGTCCGTCCGTCCGTCTGTTANNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNAAAAATTTATTTGGGAAAATTTGGGCCAAAAACTACCTAAA
AATAGGGTTTTTTGGACTTTGTGCAAAATCCTGTCATTACTTTTTTCTGA
CTTTTTGTACAAAGATGGAGGGCAAGATTCTCTAAAGAATGGCTTAAGAG
GTTTTTCCCGGAAAATTCTTATTCGCCTTAAAAAACGGATTTTCGTATTT
TGGGGAAATTCCCTTTAACCAAATAAGAAAATATAGCTTTTCTCAATNTC
GCCTTAAAAAACGGATTTTCGTATTTTGGGGGAAATTCCCTTTAACCAAA
TAAGAAAATATAGCTTTTCTCAATGTTGACTTGTTATTTTTTTCTGATTT
TTTGCACAATGATGCAAAATGGCAATGCCTAATATGTGACGGAGCCCGAT
TTTCGAAGAAAAATATATTTGGCAAATTTGGGCCAAAAACTGCCTAAAAA
TAGGGTTTTTGGACTTTGTGCAAAATCCTGTCATTACTTTTTTCTGATTT
TTTTGTACAAAGATGGAGGGCAAGATTCTCTAAAGAATGGCTGAAGTGAT
TTTTCCCGGAAAATTCTTATTCGCCTTAAAAGACGGATTTTCATATTTTG
GGGAAATTCTCTTTAACCAAAATAAGAAAATATAGCTTTTCTCAATGTTG
ACTCATTATTTTTTTCTGATTTTTTTGCACAATGATGCAAAATGGCAATG
CCTAAAATGTGTTGGAGCCTAATTTTCGAAAAAAAATATATTTGGGCAAA
TTTGGGCCAAAAACTGCCTAAAAATAGGGTTTTTTTGACTGTCATTACTT
TTTTCTGATTTTTTATACAAAGATGGAGGGCAAGATTCTCTAAAGAATGG
CTGAAGTGGTTTTTCCTGGAAAATTCTTATTCGCCTTAAAAGACGGATTT
TCGTATTTTGGGGAAATTCCCTTTAATCAAAATAAGAAAATATAGCTTTT
CTCAATGTTGACTCATTATTTTTTTCTGATTTTTTGCACAATGATGCAAA
ATGGCAATGCCCAAAATGTTACGGAGCCAGATTTTTTTTGGGCAAATTTG
GGCCAAAAACAGCTTAAAAGGTTTTTTGGGCCTGAATAGTTTAAGTGATT
TTCGTATTTGGGGAAATTCCTTTTTACCATTTTACATCATTCAACACATC
AGCTTTATTTTTCCATTCTGAATTTTTGTACAATTATTGTCACTTTTTTC
TTATTTTCATCTGATGTTAATCATTAGGTAGGTCCATTCAGCATGTTGCT
TGTTCAAATTTAAGAGACATTCGAGTTATAGAGGTTTTATTTAAAAAACT
CTACTGTATTTAATTTTTAGTTGCTACTCAATGATTGGTCGTGTCGGAGG
AAAACAACAAATTTCATTGGGTAACGGATGTGGAACCAAAGGTGTCGCTA
TTCATGAAATGATGCATGCTTTAGGTGAGGAAAACTCTCAGTGTCCTTAG
TGAATGATTAGTAATGTCTCAAAATAAGTGATCCCTAGAGAGACTTACAT
TATTATTTCGAATAAACGCCCTCCTGCGCCCTCTTCTTTTAACGCCCTCT
TCTNTATTTGTGTATGATTAGTAATGTCTCAAAATAAGTGAATCCTAGAG
AGACTTACATTATTATTTCGAATAAACGCTCCCTTCCTTTAACGCCCCCT
GCTCGAATAAACACCCTTCCATGGTGGAAAACTTTTCAACAAACGCCCCC
TCAAATGAACGCCCTGTGGGAATTGTGTTTGGTGTTAATTCGGAGTAAAA
CAGTAGGTTATATGTTACATACGATCTAGTTTATATGTTCGTACGATCTA
GTTTATATGTTCGTACGATCTAGTTTATATGTTCATACAATCATTATTCT
ATTTTGATTTTTAGGATTCTTTCACGAACAGAGCAGAAGAGACCGTGATT
CATATATCACAATTAATTGGAATAATATTCCAGGACGTAAGTTCACTGAG
AGTCCCTTTTGAAATCTTCACTGCTTTAAACAGTAATTTCTTTCGTAAAA
CTATTTTTGTATGCCAAAGAATATTGTCGGGTTTTAAAAACTTGAGTCTG
CTAAAGTGACTTCTTTTATTTGCACTTTGGGCCCATGTTTGTTATGTTCT
TATTTTAAGGTCAAATTGAGGTCTTACAACTTTAATCTGCTTTCTAAGCC
ATTTCAGGCTCTAGATTTTTTCCTTTCTTGATTGAGACTCTTGCTCTATT
TTCTTATAAAGAAAGTAAAGAGTCCTTATAGTTAATAATCCAGCCTTTTA
CGATTTCAGGTGTCAGATACAATTTCGAAAAATACAGACATGGACAAGCT
CAAACTTTGGGACAACCCTATGATAAGAAATCGGTTATGCATTATGGAAA
GTAAGTTATAAATCATAACATGTTACATTGGTCTTACGTGTCAGGACTAC
CTGTTACTTCCACATACACTATCGTTGTATAACTCCTATTACGTTTATCT
TACGTTGGTCTTACACCAGGACTACCTGTTACATCAATATACACTATTGT
TGTATAATCCCTTGAAAGGGGTGCTACCAAATATTTGTATTTCTTTCCTT
TGAATGAAAGTTTTTTATATATTTTTCTGGAAGCCTTTTGTTTCTTTCTA
TTGTTTTTTACTTGAACTTGCGTTGAGAAATTAGTTTGTTTTGCTCACTT
TTTGATCATGTGATTAAATTAAACCAATCCCAAGAGAGAGTACTTGGTTA
CGTGATCAAAAACTGAGCAAATTGATTTTCATCTTTTGATATTAACAAAG
AAAAAGCTAACAATAAGCTTCCAGACCAGTGTTTTTTATAAAGACTATGA
TGGAACATAGATGTTGGTTCGCAACTCTCTATGCATACGACTTTTTGTAT
TATGAATATGATATTATCGTGTGAGTTTGACAGGGAAGTTATCACATGAC
ACATTGAATGTTTTCCCATAAGGTCTAGTATTAAAATCATTGGCGAGTAG
CATGGCTCTTTATAGCTTACTTCTTACGATCTTCATTATGTTAAACATCA
GGTTTGAAAAGAAAACTAACGTGCTCACTTCTATTCTTTATTTTCAGCTA
CGCTTTCTCTACGAACCGACAAAAAACAATTGTTTCGAAATCTAACCCAA
ATGAAGTTTTGGGACAACGACGAGGCTTAAGTACCATCGATATCCGACAG
TTAAAGACGATGTACAAATGTGGGGGTGTTAAGCCCATCCCAACTCAAAG
ACCGCCCACCACTGGAGGTAAGTTATGTGGATACAGTGATGACAGACTAT
TTCGCTTTCTCCTTCAGTCTTTACACAAAAGCTAGGTCGGAAAGAGGGCA
TAACTGATATTTCTCAGTCCAACTTTCGTAAATAATAATTATTGATGCTA
CATGAGAATTCCGAAAAAACTGTGTGAGATTTTTGACCCGTCCTTAAACC
TAAAACTAATAAGATTGGAGGAATTTAATCAGAGCCGACCCTTTTTTTTA
TTCTTTCAGACTGCAAAGACAAATACAGCCTTTGCTCAACATTGGCCGGA
CAAGGATTCTGTCGCGTCACTTTTACGTCATGGATGAAAAACAACTGCAA
GAAATCGTGCAAGAAATGTCCAACCAAGCCCTCATTACCGAGATGTAAAC
CACATAAGAATTCAAGACATTGTGCAAGTTGGGCACGTTCAGGCTATTGC
ACCAATCGTCGGTATGCAAGTTTCATGGCAGGCCACTGCTCTTCTTGTAA
AAAGTGTATTTAGGAGAGAGACAGACCATCAAAGACTTTACTTCAATATT
GCATATGTATAATTGATAAATATATATTTCTAAATGGATGGGAGAGCATT
GTTCCGAATGCAATAAATGCCGAAAATAAAGTTTGTGTCTTGAACTTTCA
ACAGTATATACCTAATAAGTTCTCGGACAGTCGACAAACATTGTGTTCAC
ATGTTAAATATTTATGACACATCACTACAGATCAACAAACGCACCCTGTG
TCGTTAAAATACGGACAAGATGACTCCAGACTATTGCAACTCCACTGAAT
TGGCGACACCCCATGGATAAATGTGGATCGCATATTTTTCTTCGTAAATA
ATTGAATAATTATGACTTCTTTTTTCTGGTAGAAAAGAAGTCGTGTTAAA
ACGAAAATAGCTACAATCCGTGCCATAATATATTTGCACTTTTGGCTAAC
TTACCATTTTTCGAAAATTGAAGTTCGAGCGAGAATGTCAATTTCAGGCC
CTCAACATGATTCCATCGATTATTTCGATCTGGGAGGGATTTATTGGCTT
CTAGGCTATATTTCAAGCCCTACTGGACCATTTTTAAACTTTTGGATCCT
CAGATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNGTTTTAAAAACTTGAGTCTGCTAAAGTGACTTCTTTTATTTGCA
CTTTGGGCCCATGTTTGTTATGTTCTTATTTTAAGGTCAAATTGAGGTCT
TACAACTTTAATCTGCTTTCTAAGCCATTTCAGGCTCTAGATTTTTTCCT
TTCTTGATTGAGACTCTTGCTCTATTTTCTTATAAAGAAAGTAAAGAGTC
CTTATAGTTAATAATCCAGCCTTTTACGATTTCAGGTGTCAGATACAATT
TCGAAAAATACAGACATGGACAAGCTCAAACTTTGGGACAACCCTATGAT
AAGAAATCGGTTATGCATTATGGAAAGTAAGTTATAAATCATAACATGTT
ACATTGGTCTTACGTGTCAGGACTACCTGTTACTTCCACATACACTATCG
TTGTATAACTCCTATTACGTTTATCTTACGTTGGTCTTACACCAGGACTA
CCTGTTACATCAATATACACTATTGTTGTATAATCCCTTGAAAGGGGTGC
TACCAAATATTTGTATTTCTTTCCTTTGAATGAAAGTTTTTTATATATTT
TTCTGGAAGCCTTTTGTTTCTTTCTATTGTTTTTTACTTGAACTTGCGTT
GAGAAATTAGTTTGTTTTGCTCACTTTTTGATCATGTGATTAAATTAAAC
CAATCCCAAGAGAGAGTACTTGGTTACGTGATCAAAAACTGAGCAAATTG
ATTTTCATCTTTTGATATTAACAAAGAAAAAGCTAACAATAAGCTTCCAG
ACCAGTGTTTTTTATAAAGACTATGATGGAACATAGATGTTGGTTCGCAA
CTCTCTATGCATACGACTTTTTGTATTATGAATATGATATTATCGTGTGA
GTTTGACAGGGAAGTTATCACATGACACATTGAATGTTTTCCCATAAGGT
CTAGTATTAAAATCATTGGCGAGTAGCATGGCTCTTTATAGCTTACTTCT
TACGATCTTCATTATGTTAAACATCAGGTTTGAAAAGAAAACTAACGTGC
TCACTTCTATTCTTTATTTTCAGCTACGCTTTCTCTACGAACCGACAAAA
AACAATTGTTTCGAAATCTAACCCAAATGAAGTTTTGGGACAACGACGAG
GCTTAAGTACCATCGATATCCGACAGTTAAAGACGATGTACAAATGTGGG
GGTGTTAAGCCCATCCCAACTCAAAGACCGCCCACCACTGGAGGTAAGTT
ATGTGGATACAGTGATGACAGACTATTTCGCTTTCTCCTTCAGTCTTTAC
ACAAAAGCTAGGTCGGAAAGAGGGCATAACTGATATTTCTCAGTCCAACT
TTCGTAAATAATAATTATTGATGCTACATGAGAATTCCGAAAAAACTGTG
TGAGATTTTTGACCCGTCCTTAAACCTAAAACTAATAAGATTGGAGGAAT
TTAATCAGAGCCGACCCTTTTTTTTATTCTTTCAGACTGCAAAGACAAAT
ACAGACTTTGCTCAACATTGGCCGGACAAGGATTCTGTCGCGTCACTTTT
ACGTCATGGATGAAAAACAACTGCAAGAAATCGTGCAAGAAATGTCCAAC
CAAGCCCTCATTACCGAGATGTAAACCACATAAGAATTCAAGACATTGTG
CAAGTTGGGCACGTTCAGGCTATTGCACCAATCGTCGGTATGCAAGTTTC
ATGGCAGGCCACTGCTCTTCTTGTAAAAAGTGTATTTAGGAGAGAGACAG
ACCATCAAAGACTTTACTTCAATATTGC

Coding sequence (CDS) from alignment at scaffold_60:1384459..1393786-

>TCONS_00071436 ID=TCONS_00071436|Name=TCONS_00071436|organism=Clytia hemisphaerica|type=CDS|length=1134bp|location=Sequence derived from alignment at scaffold_60:1384459..1393786- (Clytia hemisphaerica)
ATGAAGATTCTTGTACTTGCTGTGGTACTTTTTGCTTTTGCGTGGTGCAA
GAAGAAGGACGGCAACAACCATGATGATATTTTGGATACCAATCAAAAAA
TGTTCGAACGAGCTAAAAAAGGAACAAGTGGATTCTCAGGAAAAAAGAAA
TTGATAAAAGAGGAAGATATGCTTGAAGGTGATATTGTTTTAACTCCAAA
GCTAAGAAAATACTTGAACAACCAGAGAGACGGAAAGGCTATCAGCGCCT
TTGATGCTGCTGTCAGCAAAGCATGGCCTAAATCAGGCCCTTATGCTCGC
GTACCGTACACTTTCGCCAGAGGCTTTTCATACAAGTCTGTTGTTGGGCA
AGCCATCGCAGAATACAACGCCAAAACTTGTATTCGTTTTGTACCAAGAA
GATCTTCTGACCGAAGCTACGTTGAATTTATGCACGGGGGAGGTTGCTAC
TCAATGATTGGTCGTGTCGGAGGAAAACAACAAATTTCATTGGGTAACGG
ATGTGGAACCAAAGGTGTCGCTATTCATGAAATGATGCATGCTTTAGGAT
TCTTTCACGAACAGAGCAGAAGAGACCGTGATTCATATATCACAATTAAT
TGGAATAATATTCCAGGACGTGTCAGATACAATTTCGAAAAATACAGACA
TGGACAAGCTCAAACTTTGGGACAACCCTATGATAAGAAATCGGTTATGC
ATTATGGAAACTACGCTTTCTCTACGAACCGACAAAAAACAATTGTTTCG
AAATCTAACCCAAATGAAGTTTTGGGACAACGACGAGGCTTAAGTACCAT
CGATATCCGACAGTTAAAGACGATGTACAAATGTGGGGGTGTTAAGCCCA
TCCCAACTCAAAGACCGCCCACCACTGGAGACTGCAAAGACAAATACAGC
CTTTGCTCAACATTGGCCGGACAAGGATTCTGTCGCGTCACTTTTACGTC
ATGGATGAAAAACAACTGCAAGAAATCGTGCAAGAAATGTCCAACCAAGC
CCTCATTACCGAGATGTAAACCACATAAGAATTCAAGACATTGTGCAAGT
TGGGCACGTTCAGGCTATTGCACCAATCGTCGGTATGCAAGTTTCATGGC
AGGCCACTGCTCTTCTTGTAAAAAGTGTATTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044369XLOC_044369Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
Putative secreted metalloproteinaseTCONS_00071436-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071436-exon-scaffold_60-1575043694:1393536..1393786TCONS_00071436-exon-scaffold_60-1575043694:1393536..1393786Clytia hemisphaericaexon
TCONS_00071436-exon-scaffold_60-1575043694:1393177..1393263TCONS_00071436-exon-scaffold_60-1575043694:1393177..1393263Clytia hemisphaericaexon
TCONS_00071436-exon-scaffold_60-1575043694:1392997..1393035TCONS_00071436-exon-scaffold_60-1575043694:1392997..1393035Clytia hemisphaericaexon
TCONS_00071436-exon-scaffold_60-1575043694:1392242..1392409TCONS_00071436-exon-scaffold_60-1575043694:1392242..1392409Clytia hemisphaericaexon
TCONS_00071436-exon-scaffold_60-1575043694:1391645..1391759TCONS_00071436-exon-scaffold_60-1575043694:1391645..1391759Clytia hemisphaericaexon
TCONS_00071436-exon-scaffold_60-1575043694:1389113..1389216TCONS_00071436-exon-scaffold_60-1575043694:1389113..1389216Clytia hemisphaericaexon
TCONS_00071436-exon-scaffold_60-1575043694:1388601..1388672TCONS_00071436-exon-scaffold_60-1575043694:1388601..1388672Clytia hemisphaericaexon
TCONS_00071436-exon-scaffold_60-1575043694:1388187..1388277TCONS_00071436-exon-scaffold_60-1575043694:1388187..1388277Clytia hemisphaericaexon
TCONS_00071436-exon-scaffold_60-1575043694:1387320..1387489TCONS_00071436-exon-scaffold_60-1575043694:1387320..1387489Clytia hemisphaericaexon
TCONS_00071436-exon-scaffold_60-1575043694:1387047..1387077TCONS_00071436-exon-scaffold_60-1575043694:1387047..1387077Clytia hemisphaericaexon
TCONS_00071436-exon-scaffold_60-1575043694:1384459..1384720TCONS_00071436-exon-scaffold_60-1575043694:1384459..1384720Clytia hemisphaericaexon
TCONS_00071436-exon-scaffold_60-1510915933:1393536..1393786TCONS_00071436-exon-scaffold_60-1510915933:1393536..1393786Clytia hemisphaericaexon
TCONS_00071436-exon-scaffold_60-1510915933:1393177..1393263TCONS_00071436-exon-scaffold_60-1510915933:1393177..1393263Clytia hemisphaericaexon
TCONS_00071436-exon-scaffold_60-1510915933:1392997..1393035TCONS_00071436-exon-scaffold_60-1510915933:1392997..1393035Clytia hemisphaericaexon
TCONS_00071436-exon-scaffold_60-1510915933:1392242..1392409TCONS_00071436-exon-scaffold_60-1510915933:1392242..1392409Clytia hemisphaericaexon
TCONS_00071436-exon-scaffold_60-1510915933:1391645..1391759TCONS_00071436-exon-scaffold_60-1510915933:1391645..1391759Clytia hemisphaericaexon
TCONS_00071436-exon-scaffold_60-1510915933:1389113..1389216TCONS_00071436-exon-scaffold_60-1510915933:1389113..1389216Clytia hemisphaericaexon
TCONS_00071436-exon-scaffold_60-1510915933:1388601..1388672TCONS_00071436-exon-scaffold_60-1510915933:1388601..1388672Clytia hemisphaericaexon
TCONS_00071436-exon-scaffold_60-1510915933:1388187..1388277TCONS_00071436-exon-scaffold_60-1510915933:1388187..1388277Clytia hemisphaericaexon
TCONS_00071436-exon-scaffold_60-1510915933:1387320..1387489TCONS_00071436-exon-scaffold_60-1510915933:1387320..1387489Clytia hemisphaericaexon
TCONS_00071436-exon-scaffold_60-1510915933:1387047..1387077TCONS_00071436-exon-scaffold_60-1510915933:1387047..1387077Clytia hemisphaericaexon
TCONS_00071436-exon-scaffold_60-1510915933:1384459..1384720TCONS_00071436-exon-scaffold_60-1510915933:1384459..1384720Clytia hemisphaericaexon
TCONS_00071436-exon-scaffold_60-1491911889:1393536..1393786TCONS_00071436-exon-scaffold_60-1491911889:1393536..1393786Clytia hemisphaericaexon
TCONS_00071436-exon-scaffold_60-1491911889:1393177..1393263TCONS_00071436-exon-scaffold_60-1491911889:1393177..1393263Clytia hemisphaericaexon
TCONS_00071436-exon-scaffold_60-1491911889:1392997..1393035TCONS_00071436-exon-scaffold_60-1491911889:1392997..1393035Clytia hemisphaericaexon
TCONS_00071436-exon-scaffold_60-1491911889:1392242..1392409TCONS_00071436-exon-scaffold_60-1491911889:1392242..1392409Clytia hemisphaericaexon
TCONS_00071436-exon-scaffold_60-1491911889:1391645..1391759TCONS_00071436-exon-scaffold_60-1491911889:1391645..1391759Clytia hemisphaericaexon
TCONS_00071436-exon-scaffold_60-1491911889:1389113..1389216TCONS_00071436-exon-scaffold_60-1491911889:1389113..1389216Clytia hemisphaericaexon
TCONS_00071436-exon-scaffold_60-1491911889:1388601..1388672TCONS_00071436-exon-scaffold_60-1491911889:1388601..1388672Clytia hemisphaericaexon
TCONS_00071436-exon-scaffold_60-1491911889:1388187..1388277TCONS_00071436-exon-scaffold_60-1491911889:1388187..1388277Clytia hemisphaericaexon
TCONS_00071436-exon-scaffold_60-1491911889:1387320..1387489TCONS_00071436-exon-scaffold_60-1491911889:1387320..1387489Clytia hemisphaericaexon
TCONS_00071436-exon-scaffold_60-1491911889:1387047..1387077TCONS_00071436-exon-scaffold_60-1491911889:1387047..1387077Clytia hemisphaericaexon
TCONS_00071436-exon-scaffold_60-1491911889:1384459..1384720TCONS_00071436-exon-scaffold_60-1491911889:1384459..1384720Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:1384459..1393786 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0624638	0.113615	0	0	0	0.00592385	0	0	0	0	0	0	0	0	0.860729	1.34048	1.08395	0.0538587	1.3074e-09	0.0088889	0	0	5.0576	7.36425	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001506Peptidase_M12A
IPR003582ShKT_dom
IPR006026Peptidase_Metallo
IPR024079MetalloPept_cat_dom
IPR034035Astacin-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004222metalloendopeptidase activity
GO:0008237metallopeptidase activity
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004222 metalloendopeptidase activity
molecular_function GO:0008237 metallopeptidase activity
molecular_function GO:0008270 zinc ion binding
Blast
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BLAST of TCONS_00071436 vs. Swiss-Prot (Human)
Match: ASTL (Astacin-like metalloendopeptidase OS=Homo sapiens GN=ASTL PE=1 SV=4)

HSP 1 Score: 145.206 bits (365), Expect = 4.156e-38
Identity = 91/248 (36.69%), Postives = 121/248 (48.79%), Query Frame = 2 
Query:  368 LIKEED-----MLEGDIVLTPKLRKYLNNQRDGKAISAFDAAVSKAWPKSGP-YARVPYTFARGFSYKS--VVGQAIAEYNAKTCIRFVPRRSSDRSYVEFMHGGGCYSMIGRVGGKQQISLGNGCGTKG--VAIHEMMHALGFFHEQSRRDRDSYITINWNNIPGRVRYNFEKYRHGQAQTLGQPYDKKSVMHYGNYAFSTNRQKTIVSKSNPNEVLGQRRGLSTIDIRQLKTMYKCGGVKPIPTQR 1081
            LI EE      ++EGDI+     R                +A S  WP  G     VP+  +  +   S  V+ +A+AE+   TCIRFV      R ++  +   GC+S +GR GG Q +SL   C  KG  + +HE+MH LGF+HE +R DRD YI +NWN I      NF K    Q+  +  PYD  SVMHYG  AFS     TI     P+  +GQR  LS  DI ++  +Y C    P P  R
Sbjct:   62 LILEETPESSFLIEGDIIRPSPFR--------------LLSATSNKWPMGGSGVVEVPFLLSSKYDEPSRQVILEALAEFERSTCIRFV-TYQDQRDFISIIPMYGCFSSVGRSGGMQVVSLAPTCLQKGRGIVLHELMHVLGFWHEHTRADRDRYIRVNWNEILPGFEINFIK---SQSSNMLTPYDYSSVMHYGRLAFSRRGLPTITPLWAPSVHIGQRWNLSASDITRVLKLYGCSPSGPRPRGR 291
The following BLAST results are available for this feature:
BLAST of TCONS_00071436 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ASTL4.156e-3836.69Astacin-like metalloendopeptidase OS=Homo sapiens ... [more]
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