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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071474 ID=TCONS_00071474|Name=TCONS_00071474|organism=Clytia hemisphaerica|type=transcript|length=2168bpRun BLAST on NCBI protein sequence of TCONS_00071474-protein >TCONS_00071474-protein ID=TCONS_00071474-protein|Name=TCONS_00071474-protein|organism=Clytia hemisphaerica|type=polypeptide|length=568bp MSVNLNKYKSDLVKAWEELRNPKSDNDWVIFGYDGQSSDLKVQSQGEDGIRun BLAST on NCBI transcript from alignment at scaffold_60:1563676..1591466- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00071474 ID=TCONS_00071474|Name=TCONS_00071474|organism=Clytia hemisphaerica|type=transcript|length=27791bp|location=Sequence derived from alignment at scaffold_60:1563676..1591466- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_60:1563676..1591466- >TCONS_00071474 ID=TCONS_00071474|Name=TCONS_00071474|organism=Clytia hemisphaerica|type=CDS|length=1707bp|location=Sequence derived from alignment at scaffold_60:1563676..1591466- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00071474 vs. Swiss-Prot (Human)
Match: DBNL (Drebrin-like protein OS=Homo sapiens GN=DBNL PE=1 SV=1) HSP 1 Score: 171.785 bits (434), Expect = 2.081e-46 Identity = 83/181 (45.86%), Postives = 113/181 (62.43%), Query Frame = 2
Query: 35 MSVNLNKYKSDLVKAWEELRNPKSDNDWVIFGYDGQSSDLKVQSQGEDGIVEMIDDFNGGKIQYGGARVIDPNTNLPKIVFINWQGEGVPANVKGKCANHLRDITNLFRGAHVQINARCDDDVEEDVIMEKVKNASGANYSFHKEKPKA--FVPQGKIGSVYQRSRPDLDKAFQDKGKFWA 571
M+ NL++ L +A+ + KS DW +F Y+G S+D++V GE G+ EM+++ N GK+ Y RV DPN+ LPK V INW GEGV KG CA+H+ + + +GAHV INAR ++DVE + IMEKV ASGANYSFHKE + PQ +GSVYQ++ + K FWA
Sbjct: 1 MAANLSRNGPALQEAYVRVVTEKSPTDWALFTYEGNSNDIRVAGTGEGGLEEMVEELNSGKVMYAFCRVKDPNSGLPKFVLINWTGEGVNDVRKGACASHVSTMASFLKGAHVTINARAEEDVEPECIMEKVAKASGANYSFHKESGRFQDVGPQAPVGSVYQKTNAVSEIKRVGKDSFWA 181 HSP 2 Score: 104.375 bits (259), Expect = 1.076e-23 Identity = 43/58 (74.14%), Postives = 52/58 (89.66%), Query Frame = 2
Query: 1565 RGVCARALYDYQAADDSEITFDPEDVITNIEKIDDGWWRGEAPDGSYGLFPANYVEEI 1738
+G+CARALYDYQAADD+EI+FDPE++IT IE ID+GWWRG PDG +G+FPANYVE I
Sbjct: 372 QGLCARALYDYQAADDTEISFDPENLITGIEVIDEGWWRGYGPDGHFGMFPANYVELI 429 HSP 3 Score: 92.4337 bits (228), Expect = 1.081e-19 Identity = 40/60 (66.67%), Postives = 48/60 (80.00%), Query Frame = 2
Query: 1289 AGGGITAKALFDYQAVDGTEISFDPGDLITNIEKIDEGWWRGEAPDQSYGLFPANFVEEI 1468
+G G+ A+AL+DYQA D TEISFDP +LIT IE IDEGWWRG PD +G+FPAN+VE I
Sbjct: 370 SGQGLCARALYDYQAADDTEISFDPENLITGIEVIDEGWWRGYGPDGHFGMFPANYVELI 429 The following BLAST results are available for this feature:
BLAST of TCONS_00071474 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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