TCONS_00071554 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071554
Unique NameTCONS_00071554
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length528

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071554 ID=TCONS_00071554|Name=TCONS_00071554|organism=Clytia hemisphaerica|type=transcript|length=528bp
CTACCTAGACTTTCTTAAAGAATTCGAGACGTGTCTAAAAGCGTTTAAAG
TTGTAAAATGGATTTATCATAATAACTCGTAATAACCCTAGTGTCGTTTG
AGATAATCTTCAATTTGATTATAATATtaatctcataaccgatcacCATT
AGCATTACAAAGGCATATGGATTATCTGAAAGGCTTTTGCTTTTCCAATC
CAATTCCAATTCGAGTGCTGGGTACTACAATTCGGTGCATCTGATTggct
tgttgttttttttaattgatttccCTGTAAGAGAATTTCTGCTTTGCTAA
ATATGAGGTTCTGCCGTTTTTCCCATTTCACTTTACCGTGAAACTAgtga
aacagcttagaggggtcttttggctatagatagtacttgagaatccgtga
aactggtgaaacagcttagaggggtcttttggctatagATATGTACAtga
gaatccgtgaaactggtgaaactggtgaaataGCTTAGAGGGGTGTTTTG
GCTATAGAtagtacttgagaatccgtga
Run BLAST on NCBI

transcript from alignment at scaffold_60:1705502..1706029

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071554 ID=TCONS_00071554|Name=TCONS_00071554|organism=Clytia hemisphaerica|type=transcript|length=528bp|location=Sequence derived from alignment at scaffold_60:1705502..1706029 (Clytia hemisphaerica)
tcacggattctcaagtactaTCTATAGCCAAAACACCCCTCTAAGCtatt
tcaccagtttcaccagtttcacggattctcaTGTACATATctatagccaa
aagacccctctaagctgtttcaccagtttcacggattctcaagtactatc
tatagccaaaagacccctctaagctgtttcacTAGTTTCACGGTAAAGTG
AAATGGGAAAAACGGCAGAACCTCATATTTAGCAAAGCAGAAATTCTCTT
ACAGggaaatcaattaaaaaaaacaacaagccAATCAGATGCACCGAATT
GTAGTACCCAGCACTCGAATTGGAATTGGATTGGAAAAGCAAAAGCCTTT
CAGATAATCCATATGCCTTTGTAATGCTAATGgtgatcggttatgagatt
aATATTATAATCAAATTGAAGATTATCTCAAACGACACTAGGGTTATTAC
GAGTTATTATGATAAATCCATTTTACAACTTTAAACGCTTTTAGACACGT
CTCGAATTCTTTAAGAAAGTCTAGGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044455XLOC_044455Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071554-exon-scaffold_60-1491911889:1705502..1706029TCONS_00071554-exon-scaffold_60-1491911889:1705502..1706029Clytia hemisphaericaexon
TCONS_00071554-exon-scaffold_60-1510915933:1705502..1706029TCONS_00071554-exon-scaffold_60-1510915933:1705502..1706029Clytia hemisphaericaexon
TCONS_00071554-exon-scaffold_60-1575043694:1705502..1706029TCONS_00071554-exon-scaffold_60-1575043694:1705502..1706029Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:1705502..1706029 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.778508	0.542263	0.881467	0	0.449941	0	0.142985	0	0.0937192	0.116086	0	0.296276	0	0	0	0.203315	0	0.0855736	0.236449	0	0.215059	0.314695	0	0	0.238814	0.319704	0.152499	0.162751	0	0.125766
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071554 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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