TCONS_00071563 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071563
Unique NameTCONS_00071563
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length865

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071563 ID=TCONS_00071563|Name=TCONS_00071563|organism=Clytia hemisphaerica|type=transcript|length=865bp
CCAGTTTTCAGAATTtcaggaaaacttttttctgattttccgaaAATGTT
Ccctgattttccaattttttgatcttcctgattttcagaaaaaagtttcc
ccaacttaaactgtttttttggaaaattttttcggATTTTCAGTATCGTA
AAAACCGGGCAACATTTTAGATTTCGCTTCAAAATTGTTATCTCGTGCAA
TATTTCAAGTTGGCTGGTCTGCAACACCCTAGAGATTTGACAAACTGCTC
caaagaaatattcaaaaaacactcacataaaatctaaattttgactggag
ttgAATTTTAACGAAAAAGAGTGAATCGGCCCTTTTACTTCTATGAgtgt
ttgattttaaatttgaaaaagttgaaacaaGTTTGATTGATGTAATCAAA
CTAAATCAAACTTTAAATTGTGAAGAATTTGTGAGTATCAGCATAGGTGC
AAACTCTCACACATTGGACGTGAGACTTGCACATTCCAAACACTgtctca
cacaatttttgattgacaagtttgatttctcacacATTTATAGCATTTGG
CAACCTtgtttttctgatattttgaaaaaggtttcccagattttctgatt
ttcagaaaatacCATTCcccaattttcgattttttgaaaaagttttccca
GATTTCtgatcttgaaaaaaaatttctggttTCCGAAATCGAAAAATCGG
GCTAAGATTTCGGATTttgcttcaaatttttttttatctcacGCAAAATG
AACATCTCAAGTTGGCTGGTCTGGAGTATTCCATGATTAAAGTTTGACAA
CAGAACATTAATTGGacaacaaagtttgattaaaaatactGTTGGATTAG
TTAGAATAATTTAAT
Run BLAST on NCBI

transcript from alignment at scaffold_61:5404..6268

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071563 ID=TCONS_00071563|Name=TCONS_00071563|organism=Clytia hemisphaerica|type=transcript|length=865bp|location=Sequence derived from alignment at scaffold_61:5404..6268 (Clytia hemisphaerica)
ATTAAATTATTCTAACTAATCCAACagtatttttaatcaaactttgttgt
CCAATTAATGTTCTGTTGTCAAACTTTAATCATGGAATACTCCAGACCAG
CCAACTTGAGATGTTCATTTTGCgtgagataaaaaaaaatttgaagcaaA
ATCCGAAATCTTAGCCCGATTTTTCGATTTCGGAaaccagaaattttttt
tcaagatcaGAAATCtgggaaaactttttcaaaaaatcgaaaattgggGA
ATGgtattttctgaaaatcagaaaatctgggaaacctttttcaaaatatc
agaaaaacaAGGTTGCCAAATGCTATAAATgtgtgagaaatcaaacttgt
caatcaaaaattgtgtgagacAGTGTTTGGAATGTGCAAGTCTCACGTCC
AATGTGTGAGAGTTTGCACCTATGCTGATACTCACAAATTCTTCACAATT
TAAAGTTTGATTTAGTTTGATTACATCAATCAAACttgtttcaacttttt
caaatttaaaatcaaacacTCATAGAAGTAAAAGGGCCGATTCACTCTTT
TTCGTTAAAATTcaactccagtcaaaatttagattttatgtgagtgtttt
ttgaatatttctttgGAGCAGTTTGTCAAATCTCTAGGGTGTTGCAGACC
AGCCAACTTGAAATATTGCACGAGATAACAATTTTGAAGCGAAATCTAAA
ATGTTGCCCGGTTTTTACGATACTGAAAATccgaaaaaattttccaaaaa
aacagtttaagttggggaaacttttttctgaaaatcaggaagatcaaaaa
attggaaaatcaggGAACATTttcggaaaatcagaaaaaagttttcctga
AATTCTGAAAACTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044461XLOC_044461Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071563-exon-scaffold_61-1491911889:5404..6268TCONS_00071563-exon-scaffold_61-1491911889:5404..6268Clytia hemisphaericaexon
TCONS_00071563-exon-scaffold_61-1510915933:5404..6268TCONS_00071563-exon-scaffold_61-1510915933:5404..6268Clytia hemisphaericaexon
TCONS_00071563-exon-scaffold_61-1575043694:5404..6268TCONS_00071563-exon-scaffold_61-1575043694:5404..6268Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_61supercontigscaffold_61:5404..6268 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.216328	0.0527384	1.89826	2.2166	0.218798	0.0576322	0.139062	0.130188	0.227869	0	0.109584	0.180091	0.0359682	0.0747066	0.0307095	0.065912	0.0405991	0.124838	0	0.120319	0.104579	0.15303	0.124019	0.112751	0	0.155466	0.222471	0	0.0600267	0.0611577
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071563 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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