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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071571 ID=TCONS_00071571|Name=TCONS_00071571|organism=Clytia hemisphaerica|type=transcript|length=2131bp
AGCGAACAAAGTGAAGTATCAGGAAAAAGAACTGGAAAAAAGAAGTCAGT
CCTCTCATTACAATGTGATTATTGTTTCTTCTTGTCATTATAGAACGACT
AGCGAACAAAGTGAAGTATCAGGAAAAAGAACTGGAAAAAAGAAGTCAGT
CCTCTCATTACAATGTGATTATTGTTTCTTCTTGTCATTATAGAACGACT
AGCGAACAAAGTGAAGTATCAGGAAAAAGAACTGGAAAAAAGAAGTCAGT
CCTCTCATTACAATGTGATTATTGTTTCTTCTTGTCATTATAGAGCGACA
agaaaaaatcatacaaaatcagcaaaaagaaCTTGCAAAAAAGAAGTCAG
TCCTCTCATTACAATGTGATTATTGTTTCTTCTTGTCATTATAGAACGAC
TAGCCAACAAAGTCAGTAAACAAAAagatgaacttgaaaaaaagaacAAG
TCAGTCCTTGAAATTCTCATTACAATGTGACTATTGTTTCTTCTTGTCAT
TATAGAACGACTAGCGAACAAAGTGGCAAAACAAAAtgatgaaatcgaaa
aaaataagTGGTAAGTCCTTGAAATTGTCCTCCAACAAGTACTAAAAATT
ATAATCTGATATATACAGGACGGGTGAGAACTGCGAGGtagatttctgcc
tcaaaaaactgaaagtgggaaattcgaatttaacgCTAttctcacttact
aaaataaaaacttcgGAGCTTGCCTTTTATTAAGAAAGTACGACCACTGA
AAGAataacagaatttgattggctgcaTTTTCAACCGTCATCAGGATtta
ggaaattcaaactctcagccctaatcatgctatatatttcgccatctgTG
TATAAAAtgaatcatagcatggatctccaggctacaaAGTTATAGGACGA
AAACTTATGTCAGATAAAATTTCTTTGCGTTACACCTTTCTTTCTTgacc
tatttaaaaaaaatatttcgataaaaaaattaagaaaatcagTGATAAAT
CTTGTATAGAATCTTAACCTAAAAAGCCTGTATTAAAAGCTAACAGCTCA
CTGGAAAGATATTTCTTCGTTTAGCAATTAAAACTTCCTGCTATAGAGAT
TTTTCTTGACACCACTCTTTCAGGGTCAGGCAAACCGAAAGTGTTATCTA
GCCTCGTGCCAAGCGCCACTACATAACATTTCGTTCGGCACGCCACTAAG
GctatatttgtttatgtttttgctcaCTACCCTTAAGGTAACCGAGTCTA
GGAACCTTTGTTCATTATTACAACGTTTTTACTATAGCCAAGAAAGTACT
GTTTATTCTCGAATTTGCCGTGTTGATTCCCTGGTTGTAGCCTGAACAAC
TGGCGACGGACAGTAACGATTCCATggtttcctttatttttagAGAACTA
GACGAAATGTACAAAGATGAAGACGAATACAGAAAAACCATCAGGTTTGT
TCTGAATAAAGTAATTTGTGCAAAGAAGTTACGGACAGTAACGATTCTAT
GGtgtcttttatttttagtttattagACGATATGTACAACGATGAACAGG
agtataaagaaaaaatcaggtTTGTTCTAAATAAAGTAATTTGTGCAAAG
AAGTTACGGACAGTAACGTTTCTATggtttcctttatttttagtttatta
gACGATATGTATAACGATGAACAAGagtataaagaaaaaatcaggtTTGT
TCTGAAtaaagtattttgtgcaaagaAGTTACGGACAGTAACGTTTCTAT
ggtttcctttatttttagAGAACTAGACGATATGTATAACGATGAACAAG
AGtataaagaaaaatcaggtTTGTTCTGAATAAAGTAATTTGTGCAAAGA
AGTTACGGACAGTAACGTTTCTATggtttcctttatttttagtttaCTCC
ACGATATTTACAACGACGAACAAGcatataaagaaaaaatcaggtTTGTT
CTAAATAAAGTAATTTGTGCAAAGAAGTTACGGACAGTAACGTTTCTATg
gtttcctttatttttagtttattagACGATATGTATAACGATGAACAAGa
gtataaagaaaaaatcaggtTTGTTCTGAAtaaagtattttgtgcaaaga
AGTTACGGACAATAACGTTTCTATggtttcc Run BLAST on NCBI transcript from alignment at scaffold_61:33256..35386 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071571 ID=TCONS_00071571|Name=TCONS_00071571|organism=Clytia hemisphaerica|type=transcript|length=2131bp|location=Sequence derived from alignment at scaffold_61:33256..35386 (Clytia hemisphaerica)
ggaaaccATAGAAACGTTATTGTCCGTAACTtctttgcacaaaatacttt
aTTCAGAACAAacctgattttttctttatactCTTGTTCATCGTTATACA
TATCGTctaataaactaaaaataaaggaaaccATAGAAACGTTACTGTCC
GTAACTTCTTTGCACAAATTACTTTATTTAGAACAAacctgattttttct
ttatatgCTTGTTCGTCGTTGTAAATATCGTGGAGtaaactaaaaataaa
ggaaaccATAGAAACGTTACTGTCCGTAACTTCTTTGCACAAATTACTTT
ATTCAGAACAAacctgatttttctttataCTCTTGTTCATCGTTATACAT
ATCGTCTAGTTCTctaaaaataaaggaaaccATAGAAACGTTACTGTCCG
TAACTtctttgcacaaaatactttaTTCAGAACAAacctgattttttctt
tatactCTTGTTCATCGTTATACATATCGTctaataaactaaaaataaag
gaaaccATAGAAACGTTACTGTCCGTAACTTCTTTGCACAAATTACTTTA
TTTAGAACAAacctgattttttctttatactCCTGTTCATCGTTGTACAT
ATCGTctaataaactaaaaataaaagacaCCATAGAATCGTTACTGTCCG
TAACTTCTTTGCACAAATTACTTTATTCAGAACAAACCTGATGGTTTTTC
TGTATTCGTCTTCATCTTTGTACATTTCGTCTAGTTCTctaaaaataaag
gaaaccATGGAATCGTTACTGTCCGTCGCCAGTTGTTCAGGCTACAACCA
GGGAATCAACACGGCAAATTCGAGAATAAACAGTACTTTCTTGGCTATAG
TAAAAACGTTGTAATAATGAACAAAGGTTCCTAGACTCGGTTACCTTAAG
GGTAGtgagcaaaaacataaacaaatatagCCTTAGTGGCGTGCCGAACG
AAATGTTATGTAGTGGCGCTTGGCACGAGGCTAGATAACACTTTCGGTTT
GCCTGACCCTGAAAGAGTGGTGTCAAGAAAAATCTCTATAGCAGGAAGTT
TTAATTGCTAAACGAAGAAATATCTTTCCAGTGAGCTGTTAGCTTTTAAT
ACAGGCTTTTTAGGTTAAGATTCTATACAAGATTTATCActgattttctt
aatttttttatcgaaatattttttttaaataggtcAAGAAAGAAAGGTGT
AACGCAAAGAAATTTTATCTGACATAAGTTTTCGTCCTATAACTttgtag
cctggagatccatgctatgattcaTTTTATACAcagatggcgaaatatat
agcatgattagggctgagagtttgaatttcctaaATCCTGATGACGGTTG
AAAAtgcagccaatcaaattctgttatTCTTTCAGTGGTCGTACTTTCTT
AATAAAAGGCAAGCTCcgaagtttttattttagtaagtgagaaTAGcgtt
aaattcgaatttcccactttcagttttttgaggcagaaatctaCCTCGCA
GTTCTCACCCGTCCTGTATATATCAGATTATAATTTTTAGTACTTGTTGG
AGGACAATTTCAAGGACTTACCActtatttttttcgatttcatcaTTTTG
TTTTGCCACTTTGTTCGCTAGTCGTTCTATAATGACAAGAAGAAACAATA
GTCACATTGTAATGAGAATTTCAAGGACTGACTTgttctttttttcaagt
tcatctTTTTGTTTACTGACTTTGTTGGCTAGTCGTTCTATAATGACAAG
AAGAAACAATAATCACATTGTAATGAGAGGACTGACTTCTTTTTTGCAAG
ttctttttgctgattttgtatgattttttctTGTCGCTCTATAATGACAA
GAAGAAACAATAATCACATTGTAATGAGAGGACTGACTTCTTTTTTCCAG
TTCTTTTTCCTGATACTTCACTTTGTTCGCTAGTCGTTCTATAATGACAA
GAAGAAACAATAATCACATTGTAATGAGAGGACTGACTTCTTTTTTCCAG
TTCTTTTTCCTGATACTTCACTTTGTTCGCTAGTCGTTCTATAATGACAA
GAAGAAACAATAATCACATTGTAATGAGAGGACTGACTTCTTTTTTCCAG
TTCTTTTTCCTGATACTTCACTTTGTTCGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071571-exon-scaffold_61-1491911889:33256..35386 | TCONS_00071571-exon-scaffold_61-1491911889:33256..35386 | Clytia hemisphaerica | exon |
| TCONS_00071571-exon-scaffold_61-1510915933:33256..35386 | TCONS_00071571-exon-scaffold_61-1510915933:33256..35386 | Clytia hemisphaerica | exon |
| TCONS_00071571-exon-scaffold_61-1575043694:33256..35386 | TCONS_00071571-exon-scaffold_61-1575043694:33256..35386 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_61 | supercontig | scaffold_61:33256..35386 . |
Blast
The following BLAST results are available for this feature:
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