TCONS_00071582 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071582
Unique NameTCONS_00071582
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2479

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071582 ID=TCONS_00071582|Name=TCONS_00071582|organism=Clytia hemisphaerica|type=transcript|length=2479bp
gttttgttaatgAGCTTAATTGTTATCACACTTATTACGAACTATGGAAC
TATTATTCTGAAAGTTCTAATTAAATAATTCAAGGTATCTTTTGATTGGT
GAGAGATATATATTTTCATTCCGTCCTTTCCTTTTTTCATTCCTTCAAAT
CACTTGCAAGAAGCAAGGAGCAAAGAAGGTTTAGAAGAATTTGAAGTGGA
AAAACAAGACAAGaaggAAAGAAGATCCAAAGATATTATCAAACTGCTGA
AGACATGTTGAAATCAACAACTCTATTCCTATCGGCTATCGCCATGGTAA
TTGTAACAGgtgggGCCATTTCGTTGGAGAATTTGGAAGAAAATTACAAA
CGTACTATTGCAGGGCCCCATGTGGAGGTCAAAGCAGAAAATAACAAGCC
TAGCAAAGCGACATCAAAGGTCATCACCCAAAAAGGTGTATTTGCCGATT
GTCAAAAACGAAGACCAACCATCGACTGCAGCAAAGCCAGCAAAAAGTTC
CGATCCATCGATGGGCTTTGTAACAATGTTAATCATCCAGAATGGGGAGC
CACCAAAACTCCAGTTAAGAGATTAACCAAAGCCCTTTATGCAGATGGTG
TGGCAACAGCTCGTGGATTTCCAAATACACCAGTGATTCCAACAGCAAAT
CAAGTCTCTAAAGCTGCATTTACAGTTGAACAGAAGAGCATGTCAAATAG
TGAAGGTTTTGCTGTTTCTTTCATGGCCTTTGCACAATTTGTTGATCATG
ATATGACTGATGTCGAAATGCAAGTttgcaaatataaaaaatacggAAGT
TGCGACAACATAGCGGAATCATTTAAATACCCATGTCTACCGATTCTGTT
CAATAACAACAACTTGAACGATAATTCAAAGAAAGACTGTACACCTTTTC
ATCAATCCGTTTCCATGTGTAAAATAGACGAAAATAATGTAGATGAAGTG
CGCGAAGTTCCAAATCGGGTATCGTCATTTCTTGATGGTTCACAAATTTA
TGGAGCAGAAGCTGATCTAGCAGATGCACTGAGAAGTACAGAAGatCGGG
CTAAGATGAATCTTACCTGCGATGGCTTGCTACCTGTTATGCTGATACCT
GGTGTTTCTGCATGTTCCTTCCTACAAAATATTGATGGTTTAAAGAAGCG
TAGCACGTGCCGTGTTTTGGGTGGATGCTCTTTTGTAGGTGACCCAAGAG
GTGATGATAATATCCCCTTACACACAATGCATACCCTATGGCTCCGCAAC
CACAATAAAATTGTGGACGGTCTTCGAGCACAAAACCCTAACATGTACAC
TCATGAAGCTTTGTATCAAACTGCACGCAAGATTAATACTGGAATCTGGG
CTCATTTGGCTTTTGATGAATATCTTCCAGATTTGGTTAAACTTCCAGTC
TATACTGAATACAAAGCTAACACTGATCCAAGCATTATTAATGCTTTTAA
TACCGCCGCTTTCCGTTATGGTCATAGCTTAGTTCCCAACTCTTTTGACC
AAAATGACAATGCGTTCAATCGCCTTGCTGATCCCATTTCATTACAAGAC
GCTCTCAACAATCGGGAACCAATCAACTATCGTGGTATTGAACCCATCTG
GTTTGGATTAACTGGTAATAAATCAGCTAGAGTAGATTATAAATTTGCAG
ACGGAATCGCACGCAAATTATTTGTTCGTCCTCAAGAAAAATTATATCGT
GATTTACTTGCTATTAATATCCAAAGAGGCCGTGATCATGGCTTGCAAAC
GTATGGCCATTACCGTAAGTTGTGCAAGCTCCCACCATTGAATTCCTGGA
AGGAAGCAGAAGATAAAAAAGTCTTCTTTAAAGCCGCAAGAGAAGGCTTA
CAAAGAATCTTCAAGCATCCCAATGACGTCGATCTGTATGCTGCTGGTGT
CTCGGAGATTCATGCAACGGGTTCAGAACTGGGTCCGACGTTCCAATGCT
TAGTCAAGAAGCAGTTTTTGGCAATCCGAGATGGAGATCGATTCTTTTGG
CGAAATCCTAAGGTTTTTAAAGAAGATCAGAGGAAAGCCATCGAAGCTGT
CAGTTTTGCGAGTATTCTTTGTGACAACTTGAATGGTATCGTATCCATTC
AACCTAAAGCATTGAGAGTACCTAATACAGTTGACAACCAGCGAACCGAA
TGCGGTAATATCAAAAAACTTGATTTATCTAAATGGAAGATCGATTAAGG
ACAGATATTTAATTACATATTTTTGGGAAAAGGCCGGACTCGGACAACCT
TTATATTCAAAAAGAACTATTTTTGATCGCCATACTAAAATGTATTAACg
aaatccaatttttttttttaaccaaaCAAACTATTGGATAAATCAACCTT
GGTGGCTAACTCTAGCTTtagtattttttcttttcaactaAATAATATGT
CAATCCAGGAACATCTTTCCTATAGTTCTGTTAAACTGACGGTCAATATA
ATGCTAAATTTTCAATATGTGGGACCTTT
Run BLAST on NCBI

protein sequence of TCONS_00071582-protein

>TCONS_00071582-protein ID=TCONS_00071582-protein|Name=TCONS_00071582-protein|organism=Clytia hemisphaerica|type=polypeptide|length=647bp
MLKSTTLFLSAIAMVIVTGGAISLENLEENYKRTIAGPHVEVKAENNKPS
KATSKVITQKGVFADCQKRRPTIDCSKASKKFRSIDGLCNNVNHPEWGAT
KTPVKRLTKALYADGVATARGFPNTPVIPTANQVSKAAFTVEQKSMSNSE
GFAVSFMAFAQFVDHDMTDVEMQVCKYKKYGSCDNIAESFKYPCLPILFN
NNNLNDNSKKDCTPFHQSVSMCKIDENNVDEVREVPNRVSSFLDGSQIYG
AEADLADALRSTEDRAKMNLTCDGLLPVMLIPGVSACSFLQNIDGLKKRS
TCRVLGGCSFVGDPRGDDNIPLHTMHTLWLRNHNKIVDGLRAQNPNMYTH
EALYQTARKINTGIWAHLAFDEYLPDLVKLPVYTEYKANTDPSIINAFNT
AAFRYGHSLVPNSFDQNDNAFNRLADPISLQDALNNREPINYRGIEPIWF
GLTGNKSARVDYKFADGIARKLFVRPQEKLYRDLLAINIQRGRDHGLQTY
GHYRKLCKLPPLNSWKEAEDKKVFFKAAREGLQRIFKHPNDVDLYAAGVS
EIHATGSELGPTFQCLVKKQFLAIRDGDRFFWRNPKVFKEDQRKAIEAVS
FASILCDNLNGIVSIQPKALRVPNTVDNQRTECGNIKKLDLSKWKID
Run BLAST on NCBI

transcript from alignment at scaffold_62:270059..281265+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071582 ID=TCONS_00071582|Name=TCONS_00071582|organism=Clytia hemisphaerica|type=transcript|length=11207bp|location=Sequence derived from alignment at scaffold_62:270059..281265+ (Clytia hemisphaerica)
gttttgttaatgAGCTTAATTGTTATCACACTTATTACGAACTATGGAAC
TATTATTCTGAAAGTTCTAATTAAATAATTCAAGGTATCTTTTGATTGGT
GAGAGATATATATTTTCATTCCGTCCTTTCCTTTTTTCATTCCTTCAAAT
CACTTGCAAGAAGCAAGGAGCAAAGAAGGTTTAGAAGAATTTGAAGTGGA
AAAACAAGACAAGGTAAGACAAttttctaaagattttaaatCAAGAAACA
GGCCTGTCGggagcggggagactggggaggcAGAAGTCTCCCTACtcttg
agcaaatgagattcttttcttaaattcttagcgaattttatcttattttg
agccttcagccttaTCACATTTATTGCTTTTCCACCGGGTCTGGTAAAAC
CTTTCTTATTTGAGCACTCCTGTCCCACAGTTCTGGCTTAACCTCTCCCA
AATGGGGATTCTATTGTAAGTCGTCATGTCAAAATATCCAGTGAGATGGT
TTTGAAGTACAAatcttttccattgaattttaaatCGGGATGAAAACAGT
GGTTGGgaaattataattgaaatgtTCACACTGGAGACGAAACATTTCAG
TGGGTAGGAATCCCCACGGGTCTTTGACACAGGGGTTTATTTGAACACTT
TGTAGTTTAGTTATTATGACTACCACTGCTAGCTCTCTAAGAGTGCTGAT
GGAATCTTTAATTCTAGACGGATAATTTTTCACTCttttgtcaaaatata
ttgggaattttggtCTAATTCCTCAGATCCCATCAGACCTGGGTAGTGTT
CATACTGTTCCCCCTCCCTTTTTAGAGGGACCCCCACCCCTCCCCGctta
ttatttttgaaaatatttcaacgATCAAAAGCttctctaaatagcctgat
ccAAGTCAATTTTTGGgtttgaggctcaaaatctgAATCTAGCCTCAAAT
TGAGGTACAACTGTGAAGCCCCGGCAACTAGGACCTCGTTtattaaaaca
ttttgaaaaaattgggaCCCCTCTGCTATTTGGGACCTTAAGCTTTggat
tattaaaaaataaaacggATACGTaggtttccacgttttaaaaggtGGCG
TGATTGGTCATTTACTTTACTCTTTTTTTGAAGATAAAtagagaaaagga
aaaaaaaatctttcgaaattTGTGCTCGTGCGGCGTGGGAAAGGGAGAAA
AACGATTTTGATGGTTTTGTTTATAAATGCTGAGTAAGCAAATGGTACGA
GATACGTTAAATCATAGTCCTAAAAAacacttataaaaaaacactggtct
tgaagcttattgttttaactttttgttagttttttttcctttgttatgca
ccttttcgaccgtagccgataatttccgcgcgggcattttttaccaccct
aaaaccgtcccagacTTTTTTTTTAGCGCctgaagacaatagaaaaaagt
gtaaaaaaaggattggatcgaatttatggtggtaaaaaatgcccgcgcgg
caattggcggctacggccGAAAAGGTttcatcaaaagatgaaaatcgatt
tgttcagtttttgatcacgttaccaagttcTTCCCTTGGGATTGGTTtga
gatttaatcacatgataaaaaaaaactaatttctcaacgcaagttcaagt
aagaaacaatggaaagaaacaaaaggcttccaaaCCCGGGTTTTTTTTAT
ACGGACTTTAGTTAAATGACGAcctcttatttttttagaaggAAAGAAGA
TCCAAAGATATTATCAAACTGCTGAAGACATGTTGAAATCAACAACTCTA
TTCCTATCGGCTATCGCCATGGTAATTGTAACAGGTACGATGTAGCAGAA
TGCCATTGGAGGGAGGGGGACTATTATCCAATGTTCAGTAATTTCAAGTG
GTTTTCTCAAACATATATGTCCTTGATTGTAGTAGTTTTGTACAAGCTAA
ACATACGATTCAATTTTGCCTATTCACGAAAGAATAGATATTTGAACCAT
GTGAGCATTTTAAATCTCTAACCCTACCCTTCATGGataaaatatttcag
aattCAGAATTCACAAAGACAGTTTCTATTAGCAGCGTAATAGACGATAA
gctaaaggttttatttttacattgttctcgtttcatatcagacacatgtt
tcatatcagggtagtgtctgcctattgttatattgtgctgatataaacaa
aaaatgtttttttttcttctttctgatcGATCTTGCTCCgaatccgtgtc
aattcaatctgaaaaagcttgtgaattaaaaatgattagtaagcaaacga
tttcactcttatttaaaagcaaaacctGCCTTTAACCATAACAAAAGTTC
CAATATATCTCAATTTATTGTTTCAATATATCTtctttctttgaaaaggt
gggGCCATTTCGTTGGAGAATTTGGAAGAAAATTACAAACGTACTATTGC
AGGGCCCCATGTGGAGGTCAAAGCAGAAAATAACAAGCCTAGCAAAGGTA
CGTCAGCccatttttctgtaattcgaacaaaaatattggtccacttagct
ggaaagtggtttaaattactctctgttaTGTAGTGTCAAATCTTATTCGA
ATTCGAATAAAAGTTTTTTGGTCACTTGTAGATCGACCTTctgtttaatt
ttttcttttttctctttatatGATTTAGCGACATCAAAGGTCATCACCCA
AAAAGGTAAAGAAATACGAGAATTATTACTGGATAAACGCCGTGGGAGAC
CCACTTATTACTGTTCGAAATATTTTCGGACCCCCACCCGTTTGTATTAG
GANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAC
CCCCCTcctgtttatttacttttgaaatattttagctAACACAAGCTGAA
TTGCTCTAAAAAGCCTGCTTCCAGCCTATacttaccttattttggggttt
tggAAGTATAATTTCGGACCACTTTTTTGTTCGGATCCCCCTACTTTTCG
GCATCTTAGAGAAAGAATAATTATTAGTAGACAACCCTAAATCAGatcgt
ttgaaatttttaagaatGGTGAAAACAACTAACCTGAGGATTTTGCTATT
TACTTTTACGATGTTCGCATATTGCTGCAAACGATCTATACAGGGGGGGT
CAAGGTTTACGGTGACATGGTATGGGCCTTTTTTTgtccggtatttcggt
atttaaagaaaaatgtacGGTTAGTATTCCggtatttgaaatttaaaaaa
cacgTGGGGAACTTAACAACCCTGTTCCTATAATGAGTATAATTGACATc
atttgatcaaattttaagAAGACANGCTGCCGGTGACggtaaattgccta
aaaatgCTTTGGTATTTCGTTATTTACCCATGGAagttcggtatttcggt
aaattcaaaatctttctgaactgcattttcataaaatttagaaaacgaca
CCCCTGATTTCTACCATCAAATTTGACACAGTATACTACTTCAGCCCCAA
AGCAGTAGCGTGGCAGCAGGGAGTAAGAGGAGCAACAGCTCCCCTCCAGT
GGTGACTGTGGGGGGGGCGCCGAATATTCCATCCACTATCCTTTGAATAA
TGACTTTTCATAACCTTCGATTAAAAAGTGATACTATCTGTTAAAGCACT
TTCAATTGTCTTTTTTTTGGTTAGAgtagaatttgataaaaaacatTAAC
GATTATCATTAGCAAAATGGAAGGACTAAACCAATTATGGAACCCCTTTC
TCTATTTTTACATTGCAAAACGCGTTTTTAGCCATAATAGAGGGGATAGA
GCTATGGATTAGCTAAAAAATTTCGCGcaatttattttcataaaacaTTT
CCGTAGTGCGAGGTGCTTTTTTTTGATTCGCTTCCTCAGTCTTGATAAAG
CAACCACGCTAATGCCCTTCCCCCAAAGGAAGGGGATGAGAATAATTCTT
CCAATGAACTCAAATGAGAACTTCAATATTTCCGTGAAAAGAATCTCTTG
CGGCACTCTGTTATATAGTcgaaaagtctaaaaacatagtgtttttagtc
aaaagtcaaataaaaaagtattaaaaatcgaaattttctcctgccggcac
aaaccatggttgcgcctccttagttaTTAAACTTCGCTTCCTCTATGCTA
TTTACGTACGTATATTCTCTATGATATGTACGTTGAAAATAGATCGTTCG
TCCGATGAAGATAACagttgaaaaattaaagtttCAACAGGGTGTCTCTT
ATTGCTTCTTATTTTATCAACAATTCTTTCAGTTGAAATGCCTTTCCTTA
CGAATTAGGCATAAcataaattctaaaaattgtCGGCGACTGTATTTGGA
GTTTATTTTGTCCGGTATTTTGGGAAAGAATtgccggtaaatcggtattg
aGTACCccttgaacccccccccccccctcctacACAGTAATTGAAACTTA
CTGTCCTAACGTTCTGCTATTCGATACGCTcaattatttgataatattga
aagccatTGTCAATAAGAAAAAATGACGCTGTACTTTTGACAAGCTCCGT
TATTTGAAAGTCGAATCGGAGAGCGTCAAGTATAGTAGCAAACCAAAATG
GTAtattatttattaagctgtgacgatgtaactgaaaaataaatattttg
cttggtaTATTTTTTGATCCTCAGATAGTTGATTTTCCAAAGTCTCTCAT
AAAATCATGACATGTAGTGAATTCTCTCTAATTCGGAGCCTCCAAAATTT
AAATCTTACGGTAATTTGCTCAATATTAGTGGGTGGAGGTATTTCATCCG
GGCGTTATAGTCAATCATATACTTGtccaaaggggggggggggccattTT
TCTCAGGGTGGGGTTTAAAATCTTAACCCTATCAGCCGcaggggggtaga
atctaccacactggagttcttttgtgtatatctcggagaaaaatttttta
aacgacttaaAACTATTtaacttttaataaaaaattttaggatcataggt
catccagatcaggttttatgacttttgaaacatgacataaaacccagcta
aaatttTTGTAAACTCAAAATTTCTAAAGTACTGATACTTTCTggactat
ttattcaatcatttttaaattttgacacgtgataggtattgacaatataa
attcaattttttttcttcctggaaatttaTGTCATGATGGAGAATATATG
TACCAAAtgtcatggccatagctcttctagataaaaaataatcgaggTTG
GTAGATTCTAACCCAACCCTAggatacaaaaataaaaaaagcttggGGTT
ATAGGGTTAATCCATGGGGGGAGGTTAACTGAAATATGTTATATGTTATA
TCATACAACTCACGTTTACAACTTTTTCTTGAAGAGCCCAATGAACTATT
TTGAGattgactttttcaaaaataatcgtAAGGAATCCTTTTCGATCTTT
GTCACTCgatatttaattatccccctaaactcgatccaatcctttttttg
acaacttttctATTGTCTATGGGTGCGAAAAagggactgggacggtttta
gtgggataaaatgTCCGCAtggtaattggcggctacggtcgaaaaggtgt
attataacaattttttcaaGGTGTATTTGCCGATTGTCAAAAACGAAGAC
CAACCATCGACTGCAGCAAAGCCAGCAAAAAGTTCCGATCCATCGATGGG
CTTTGTAACAATGTTAATCATCCAGAATGGGGAGCCACCAAAACTCCAGT
TAAGAGATTAACCAGTAAGTATTTAAGTGCATAAAATTAGTTCTATTTAC
actgagacgattaatttgtctgagacAAGCAATTTAGAACATTGGTCtgt
actttccattcatgtttcaataaataggatctccttcacagatcacattt
tacaaacttctcgtctcagacgatttttttgtttcagcaaggatttatta
tacactggatatacaagtaacagattttttccgatttctcgtgtactcta
tgtccgcagtaatgatattattgttcagtCTCCTTCCCtcgttaaatgat
ttttcgaagcatttttattgcatttcttatcgaaaatcgcTCATCCAATT
ctcaaaagagacttaaaactttcctgtgagagtcagattcgtccacttaa
ttgctaattataagtcattatgacgtttcaagctgtgagaaagatgcaaa
agacgtgcttttcacgcagaagatgctatatatggtcaattttagaccaa
aatgtggcgaaaagtggaacttggatatgaaatatctcgagttatgTAAG
GAAATCGGCcataaccgtttaaaagtcttctatatagtttttcgagaggt
ttcgaatggtatacttgataatgtctaaaaatgagtttgaaattttcaaa
aaatgtcgcccttaggattttgcctgggaaaaatagaaattgctcaaaaa
agggatgttccaccagtggaattttaggggattttttcctgaggtataag
catcctatagagaaggtctggagatctagctagatcttatttttttccta
caaacagcctgtatttttgtaacacgaccacactatacACTCTCTGCGCA
TTGTCAAAAATCCCCTGTATGGAAACCTCTgtgatgaagtatgatttata
aaaagCAATACTTCTCTCGCCATATCCCCTCGTCCGCATCGGTCGATTTG
AAAAGTCTCAAATAAGAAAAGCCAATGTCAACAGACCTACGGACGCATTG
ATACCACAGTCGGAGTAAACCTgatcttttgaaatatttcttttgctatt
ttaaCCCCAAGGAATAGGAaagaatacactttttttttataagaacatcc
caaatttttgaagccttcagatgttaagcctaaaaatgtccttaatatgt
tcttattctcaccattttgaaagtatttttctatattttcctaagaaaat
aggtttTTAAGGGTccaaaaagccttcaaatgttcctaacttatttttaa
cattttggccatcgaagccttatgtccTAGTATAGTtcgttcttattaaa
aaacgtgtattcttctAGATCGATTCACTTTACTTTGACCAGATCAATTT
TGGAAagatttattgtttttaaaaagcttaaatagATTTACTAGATTAAA
TTTCCCTGACAACTTTCATTGTTTGATTTCAAATGCTTTATCCTTTAATT
TATTATCCCAGTCCACTGTTTCAGAGATCTCGTCATTCTTTACAAAGCTT
TTGCACGGAGCTAAAAATATTGGTTTGTGgcattcccagctggcacacaa
cgttgttcaaacattcaaataacgttatttggacgtaaaagaatgtcaaa
tggacgttgttttgacgttgtgcgCCGTCCGGGTTAAGTACGAAATCTAT
TCCATAGATTTCACAGTCGAAGTGGATCATTTTTAATCAGGACTGATTTG
CACCTCCATAacggcttcccgttggctaggcggaaaaatctttaaaattt
tcaaaactctggactaatagtaagtcgtcattagcacGCAgtagtcctga
ttacccattacactttgcgactgtgaaatggcttaccttatcggccaaaa
cttagtcggccctaagtgactaaattttggcttggtgactaaaattaggg
ccgaataaaaatttgggccgactaaaatttggcccgactaaaaatttaga
aatggtcAAAACTTAGTTATTAGTCGGctcttagtgactaaattttgacg
aggtgactaaaattagggccgattAATAATTAAGGTTGACTAAAATtgag
gccgactaagttttggcagATAAGTTAACTTTAATTGAATAACATCGCAT
TTTCAGAAGCCCTTTATGCAGATGGTGTGGCAACAGCTCGTGGATTTCCA
AATACACCAGTGATTCCAACAGCAAATCAAGTCTCTAAAGCTGCATTTAC
AGTTGAACAGAAGAGCATGTCAAATAGTGAAGGTTTTGCTGTTTCTTTCA
TGGCCTTTGCACAATTTGTTGATCATGATATGACTGATGTCGAAATGCAA
GTttgcaaatataaaaaatacggAAGGTAATGCTTTTAATTGCTGTTTAG
GGGGTAATATGGTATAATGGTTATCATCCTTAACTTCCGGCTCTGGGCGC
CccagttcgatacccaccgtctCTATATCTCTATCACTTAGCAATNTTGG
GAGGCCccagttcgatacccaccgtgtccATATCTCTATCACTTGGCAAT
TAAATATatcttcgcccgggtcaacccatgccatgtgaggggaattggat
ACGATTATTTTGATACAAGAGTTTGGTAGATGAAATAGACAATTCGAAGT
GCcgtggcactcataaggttcAACCTAACGCGAGCATCGCCTCtgcctcg
tattcaaataattaccatggtgattatggcccttgagacattaattttat
ttttttaatagaaagtagttttatcAAAATCCGCTGGGGAGTTAATCACC
GTGGCAATAATTTccaaacgaggcaagtgatgttagTGACGTAGTTTATG
AAAAGATCTATATTGATGAAAACAACTTTATTCCCTCTTTATAGTTGCGA
CAACATAGCGGAATCATTTAAATACCCATGTCTACCGATTCTGTTCAATA
ACAACAACTTGAACGATAATTCAAAGAAAGACTGTACACCTTTTCATCAA
TCCGTTTCCATGTGTAAAATAGACGAAAATAATGTAGATGAAGTGCGCGA
AGTTCCAAATCGGGTATCGTCATTTCTTGATGGTTCACAAATTTATGGAG
CAGAAGCTGATCTAGCAGATGCACTGAGAAGTACAGAAGGTGAGTgataa
ccctgtctcacagccttgTCTCACAGCCTTGTCTCACAGCTCTGTCTCAC
GGTCCTGTCTCGcagccctgtctcacagccttgTCTCACGGTCCTGTCTA
ACAGTCCTGTCTAACAGTCCTGTCTCACAGCTCTGTCTCATAGCCTTGCT
CACGGCCCTGTCTAACTGTCTAACAGTCATGTCTCACAGTCCTGTCTCAC
AATCTATTCTCACAGCCCTGTCTAACAGTTCTTTCTCACAGCCCTGTCTA
ACAGTTCTGTCTCATAACCCTGTCTCACTACCCTGTCTCATAGCCCTGTC
TAACagtcctgtctcacagccctgtctcacagccctgtcTTATGACCCTG
TCTAACCGCCCTATCTCACAGCCCTGTCTTtcaaccctgtctcacagctc
tGGCAAAACTTCTCTCCACAGTGGGAAATGAAAGTTTCTCTTGAAATCCC
AATTGATTTTCCAATTGgagattgaaattttattgttccaaggtttaaaa
agtacccccccccccccccgggggggggggcaaaaaaaattttttaaaat
ttaaaaaaaaattttcaaacccaatttattttccaattttgaattgacat
gtattttttccaagggttaaAAAGTTGCCCCTCCCCCCGTACGAGAGGTG
TGTCAAACTAAACTTTTTACAATCTGAAAAACATATTGGCACGTGAAATT
GATGTAAATTATGAGGTCAAGACTCCCTGTCTTCTTCACTTGAGCGTCTT
AAAAAATTATTAACAAACAAAGTTAAATCGAGAGTAGAATTTTGTAgtaa
taaatgtttttttctttcctagatCGGGCTAAGATGAATCTTACCTGCGA
TGGCTTGCTACCTGTTATGCTGATACCTGGTGTTTCTGCATGTTCCTTCC
TACAAAATATTGATGGTTTAAAGAAGCGTAGCACGTGCCGTGTTTTGGGT
GGATGCTCTTTTGTAGGTGACCCAAGAGGTGATGATAATATCCCCTTACA
CACAATGCATACCCTATGGCTCCGCAACCACAATAAAATTGTGGACGGTC
TTCGAGCACAAAACCCTAACATGTACACTCATGAAGCTTTGTATCAAACT
GCACGCAAGATTAATACTGGAATCTGGGCTCATTTGGCTTTTGATGAATA
TCTTCCAGATTTGGTTAAACTTCCAGTCTATACTGAATACAAAGCTAACA
CTGATCCAAGCATTATTAATGCTTTTAATACCGCCGCTTTCCGTTATGGT
CATAGCTTAGTTCCCAACTCTTTTGACCAAAATGACAATGCGTTCAATCG
CCTTGCTGATCCCATTTCATTACAAGACGCTCTCAACAATCGGGAACCAA
TCAACTATCGTGGTATTGAACCCATCTGGTTTGGATTAACTGGTAATAAA
TCAGCTAGAGTAGATTATAAATTTGCAGACGGAATCGCACGCAAATTATT
TGTTCGTCCTCAAGAAAAATTATATCGTGATTTACTTGCTATTAATATCC
AAAGAGGCCGTGATCATGGCTTGCAAACGTATGGCCATTACCGTAAGTTG
TGCAAGCTCCCACCATTGAATTCCTGGAAGGAAGCAGAAGATAAAAAAGT
CTTCTTTAAAGCCGCAAGAGAAGGCTTACAAAGAATCTTCAAGCATCCCA
ATGACGTCGATCTGTATGCTGCTGGTGTCTCGGAGATTCATGCAACGGGT
TCAGAACTGGGTCCGACGTTCCAATGCTTAGTCAAGAAGCAGTTTTTGGC
AATCCGAGATGGAGATCGATTCTTTTGGCGAAATCCTAAGGTTTTTAAAG
AAGATCAGAGGAAAGCCATCGAAGCTGTCAGTTTTGCGAGTATTCTTTGT
GACAACTTGAATGGTATCGTATCCATTCAACCTAAAGCATTGAGAGTACC
TAATACAGTTGACAACCAGCGAACCGAATGCGGTAATATCAAAAAACTTG
ATTTATCTAAATGGAAGATCGATTAAGGACAGATATTTAATTACATATTT
TTGGGAAAAGGCCGGACTCGGACAACCTTTATATTCAAAAAGAACTATTT
TTGATCGCCATACTAAAATGTATTAACgaaatccaatttttttttttaac
caaaCAAACTATTGGATAAATCAACCTTGGTGGCTAACTCTAGCTTtagt
attttttcttttcaactaAATAATATGTCAATCCAGGAACATCTTTCCTA
TAGTTCTGTTAAACTGACGGTCAATATAATGCTAAATTTTCAATATGTGG
GACCTTT

Coding sequence (CDS) from alignment at scaffold_62:270059..281265+

>TCONS_00071582 ID=TCONS_00071582|Name=TCONS_00071582|organism=Clytia hemisphaerica|type=CDS|length=1944bp|location=Sequence derived from alignment at scaffold_62:270059..281265+ (Clytia hemisphaerica)
ATGTTGAAATCAACAACTCTATTCCTATCGGCTATCGCCATGGTAATTGT
AACAGgtgggGCCATTTCGTTGGAGAATTTGGAAGAAAATTACAAACGTA
CTATTGCAGGGCCCCATGTGGAGGTCAAAGCAGAAAATAACAAGCCTAGC
AAAGCGACATCAAAGGTCATCACCCAAAAAGGTGTATTTGCCGATTGTCA
AAAACGAAGACCAACCATCGACTGCAGCAAAGCCAGCAAAAAGTTCCGAT
CCATCGATGGGCTTTGTAACAATGTTAATCATCCAGAATGGGGAGCCACC
AAAACTCCAGTTAAGAGATTAACCAAAGCCCTTTATGCAGATGGTGTGGC
AACAGCTCGTGGATTTCCAAATACACCAGTGATTCCAACAGCAAATCAAG
TCTCTAAAGCTGCATTTACAGTTGAACAGAAGAGCATGTCAAATAGTGAA
GGTTTTGCTGTTTCTTTCATGGCCTTTGCACAATTTGTTGATCATGATAT
GACTGATGTCGAAATGCAAGTttgcaaatataaaaaatacggAAGTTGCG
ACAACATAGCGGAATCATTTAAATACCCATGTCTACCGATTCTGTTCAAT
AACAACAACTTGAACGATAATTCAAAGAAAGACTGTACACCTTTTCATCA
ATCCGTTTCCATGTGTAAAATAGACGAAAATAATGTAGATGAAGTGCGCG
AAGTTCCAAATCGGGTATCGTCATTTCTTGATGGTTCACAAATTTATGGA
GCAGAAGCTGATCTAGCAGATGCACTGAGAAGTACAGAAGatCGGGCTAA
GATGAATCTTACCTGCGATGGCTTGCTACCTGTTATGCTGATACCTGGTG
TTTCTGCATGTTCCTTCCTACAAAATATTGATGGTTTAAAGAAGCGTAGC
ACGTGCCGTGTTTTGGGTGGATGCTCTTTTGTAGGTGACCCAAGAGGTGA
TGATAATATCCCCTTACACACAATGCATACCCTATGGCTCCGCAACCACA
ATAAAATTGTGGACGGTCTTCGAGCACAAAACCCTAACATGTACACTCAT
GAAGCTTTGTATCAAACTGCACGCAAGATTAATACTGGAATCTGGGCTCA
TTTGGCTTTTGATGAATATCTTCCAGATTTGGTTAAACTTCCAGTCTATA
CTGAATACAAAGCTAACACTGATCCAAGCATTATTAATGCTTTTAATACC
GCCGCTTTCCGTTATGGTCATAGCTTAGTTCCCAACTCTTTTGACCAAAA
TGACAATGCGTTCAATCGCCTTGCTGATCCCATTTCATTACAAGACGCTC
TCAACAATCGGGAACCAATCAACTATCGTGGTATTGAACCCATCTGGTTT
GGATTAACTGGTAATAAATCAGCTAGAGTAGATTATAAATTTGCAGACGG
AATCGCACGCAAATTATTTGTTCGTCCTCAAGAAAAATTATATCGTGATT
TACTTGCTATTAATATCCAAAGAGGCCGTGATCATGGCTTGCAAACGTAT
GGCCATTACCGTAAGTTGTGCAAGCTCCCACCATTGAATTCCTGGAAGGA
AGCAGAAGATAAAAAAGTCTTCTTTAAAGCCGCAAGAGAAGGCTTACAAA
GAATCTTCAAGCATCCCAATGACGTCGATCTGTATGCTGCTGGTGTCTCG
GAGATTCATGCAACGGGTTCAGAACTGGGTCCGACGTTCCAATGCTTAGT
CAAGAAGCAGTTTTTGGCAATCCGAGATGGAGATCGATTCTTTTGGCGAA
ATCCTAAGGTTTTTAAAGAAGATCAGAGGAAAGCCATCGAAGCTGTCAGT
TTTGCGAGTATTCTTTGTGACAACTTGAATGGTATCGTATCCATTCAACC
TAAAGCATTGAGAGTACCTAATACAGTTGACAACCAGCGAACCGAATGCG
GTAATATCAAAAAACTTGATTTATCTAAATGGAAGATCGATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044476XLOC_044476Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071582-proteinTCONS_00071582-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071582-exon-scaffold_62-1491911889:270059..270271TCONS_00071582-exon-scaffold_62-1491911889:270059..270271Clytia hemisphaericaexon
TCONS_00071582-exon-scaffold_62-1510915933:270059..270271TCONS_00071582-exon-scaffold_62-1510915933:270059..270271Clytia hemisphaericaexon
TCONS_00071582-exon-scaffold_62-1575043694:270059..270271TCONS_00071582-exon-scaffold_62-1575043694:270059..270271Clytia hemisphaericaexon
TCONS_00071582-exon-scaffold_62-1491911889:271797..271892TCONS_00071582-exon-scaffold_62-1491911889:271797..271892Clytia hemisphaericaexon
TCONS_00071582-exon-scaffold_62-1510915933:271797..271892TCONS_00071582-exon-scaffold_62-1510915933:271797..271892Clytia hemisphaericaexon
TCONS_00071582-exon-scaffold_62-1575043694:271797..271892TCONS_00071582-exon-scaffold_62-1575043694:271797..271892Clytia hemisphaericaexon
TCONS_00071582-exon-scaffold_62-1491911889:272457..272555TCONS_00071582-exon-scaffold_62-1491911889:272457..272555Clytia hemisphaericaexon
TCONS_00071582-exon-scaffold_62-1510915933:272457..272555TCONS_00071582-exon-scaffold_62-1510915933:272457..272555Clytia hemisphaericaexon
TCONS_00071582-exon-scaffold_62-1575043694:272457..272555TCONS_00071582-exon-scaffold_62-1575043694:272457..272555Clytia hemisphaericaexon
TCONS_00071582-exon-scaffold_62-1491911889:272737..272763TCONS_00071582-exon-scaffold_62-1491911889:272737..272763Clytia hemisphaericaexon
TCONS_00071582-exon-scaffold_62-1510915933:272737..272763TCONS_00071582-exon-scaffold_62-1510915933:272737..272763Clytia hemisphaericaexon
TCONS_00071582-exon-scaffold_62-1575043694:272737..272763TCONS_00071582-exon-scaffold_62-1575043694:272737..272763Clytia hemisphaericaexon
TCONS_00071582-exon-scaffold_62-1491911889:275779..275922TCONS_00071582-exon-scaffold_62-1491911889:275779..275922Clytia hemisphaericaexon
TCONS_00071582-exon-scaffold_62-1510915933:275779..275922TCONS_00071582-exon-scaffold_62-1510915933:275779..275922Clytia hemisphaericaexon
TCONS_00071582-exon-scaffold_62-1575043694:275779..275922TCONS_00071582-exon-scaffold_62-1575043694:275779..275922Clytia hemisphaericaexon
TCONS_00071582-exon-scaffold_62-1491911889:278015..278234TCONS_00071582-exon-scaffold_62-1491911889:278015..278234Clytia hemisphaericaexon
TCONS_00071582-exon-scaffold_62-1510915933:278015..278234TCONS_00071582-exon-scaffold_62-1510915933:278015..278234Clytia hemisphaericaexon
TCONS_00071582-exon-scaffold_62-1575043694:278015..278234TCONS_00071582-exon-scaffold_62-1575043694:278015..278234Clytia hemisphaericaexon
TCONS_00071582-exon-scaffold_62-1491911889:278753..278997TCONS_00071582-exon-scaffold_62-1491911889:278753..278997Clytia hemisphaericaexon
TCONS_00071582-exon-scaffold_62-1510915933:278753..278997TCONS_00071582-exon-scaffold_62-1510915933:278753..278997Clytia hemisphaericaexon
TCONS_00071582-exon-scaffold_62-1575043694:278753..278997TCONS_00071582-exon-scaffold_62-1575043694:278753..278997Clytia hemisphaericaexon
TCONS_00071582-exon-scaffold_62-1491911889:279831..281265TCONS_00071582-exon-scaffold_62-1491911889:279831..281265Clytia hemisphaericaexon
TCONS_00071582-exon-scaffold_62-1510915933:279831..281265TCONS_00071582-exon-scaffold_62-1510915933:279831..281265Clytia hemisphaericaexon
TCONS_00071582-exon-scaffold_62-1575043694:279831..281265TCONS_00071582-exon-scaffold_62-1575043694:279831..281265Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_62supercontigscaffold_62:270059..281265 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.22007	6.23345	4.14084	3.30672	0.295071	0.0832748	4.15935	3.76226	8.0075	5.36713	7.26791	1.81113	0.686026	0.183508	109.939	134.048	1.44311	0.805711	0.215981	0.156468	0.0755548	0.154783	0.555516	0.521336	0.184581	0.269565	0.0857216	0.0914844	0.0520408	0.0883689
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019791Haem_peroxidase_animal
IPR010255Haem_peroxidase
Vocabulary: Biological Process
TermDefinition
GO:0006979response to oxidative stress
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0020037heme binding
GO:0004601peroxidase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006979 response to oxidative stress
molecular_function GO:0020037 heme binding
molecular_function GO:0004601 peroxidase activity
Blast
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BLAST of TCONS_00071582 vs. Swiss-Prot (Human)
Match: PXDN (Peroxidasin homolog OS=Homo sapiens GN=PXDN PE=1 SV=2)

HSP 1 Score: 262.307 bits (669), Expect = 5.859e-73
Identity = 192/643 (29.86%), Postives = 296/643 (46.03%), Query Frame = 3 
Query:  441 FADCQKRRPTIDCSKAS--KKFRSIDGLCNNVNHPEWGATKTPVKRLTKALYADGVATARG-----FPNTPVIPTANQVSKAAFTVEQKSMSNSEGFAVSFMAFAQFVDHDM--TDVEMQVCKYKKYGSCDNIAESFKYPCLPILFXXXXXXXXSKKDCTPFHQSVSMCKIDEN----NVDEVREVPNRVSSFLDGSQIYGAEADLADALRSTED------RAKMNLTCDGLLPVMLIPGVSACSFLQNIDGLKKRSTCRVLGGCSFVGDPRGDDNIPLHTMHTLWLRNHNKIVDGLRAQNPNMYTHEALYQTARKINTGIWAHLAFDEYLPDLV------KLPVYTEYKANTDPSIINAFNTAAFRYGHSLVPNSFDQNDNAFNRLA-DPISLQDAL-NNREPINYRGIEPIWFGLTG-NKSARVDYKFADGIARKLFVRPQEKLYRDLLAINIQRGRDHGLQTYGHYRKLCKLPPLNSWKEAEDKKVFFKAAREGLQRIFKHPNDVDLYAAGVSEIHATGSELGPTFQCLVKKQFLAIRDGDRFFWRNPKVFKEDQRKAIEAVSFASILCDNLNGIVSIQPKALRVPNTVDNQRTECGNIKKLDLSKWK------ID*GQIFNYIFLGKGRTRTTFIFKKN 2267
             + C   R   +CS     +K+R+ DG CNN+ HP WGA+ T  +RL K++Y +G  T RG       N   +P    VS      E  +++  E F    M + QF+DHD+  T V +   ++     C N+  S   PC  ++   N+    S   C  F +S  +C         N    RE  N+++S++D S +YG+    A ++R          +  +  +   LLP    P  + C   +N   +           C   GD R ++ + L +MHTLW R HN+I   L   NP+ +  + +Y   RKI      H+ +  +LP ++       L  Y  Y    +  I NAF TAAFR+GH+LV     + D  F  +A D + L  A  +    +N  GI+P+  GL G     RV  +  +    +        +  DL AINIQRGRDHG+  Y  YR  C L   +++++ +++ +     RE L+R++    ++DL+ A V E    GS LGPT  CL+  QF  +RDGDR ++ NP VF   Q   I+  S A ILCDN + I  +Q    RV     +    C  I ++DL  W+         GQ   + +  +GR    F ++++
Sbjct:  720 LSGCTAHRRVNNCSDMCFHQKYRTHDGTCNNLQHPMWGASLTAFERLLKSVYENGFNTPRGINPHRLYNGHALPMPRLVSTTLIGTE--TVTPDEQFTHMLMQWGQFLDHDLDSTVVALSQARFSDGQHCSNVC-SNDPPCFSVMIPPNDSRARSGARCMFFVRSSPVCGSGMTSLLMNSVYPREQINQLTSYIDASNVYGSTEHEARSIRDLASHRGLLRQGIVQRSGKPLLPFATGPP-TECMRDENESPIP----------CFLAGDHRANEQLGLTSMHTLWFREHNRIATELLKLNPH-WDGDTIYYETRKIVGAEIQHITYQHWLPKILGEVGMRTLGEYHGYDPGINAGIFNAFATAAFRFGHTLVNPLLYRLDENFQPIAQDHLPLHKAFFSPFRIVNEGGIDPLLRGLFGVAGKMRVPSQLLNTELTERLFSMAHTVALDLAAINIQRGRDHGIPPYHDYRVYCNLSAAHTFEDLKNE-IKNPEIREKLKRLYGSTLNIDLFPALVVEDLVPGSRLGPTLMCLLSTQFKRLRDGDRLWYENPGVFSPAQLTQIKQTSLARILCDNADNITRVQSDVFRVAE-FPHGYGSCDEIPRVDLRVWQDCCEDCRTRGQFNAFSYHFRGRRSLEFSYQED 1345
The following BLAST results are available for this feature:
BLAST of TCONS_00071582 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PXDN5.859e-7329.86Peroxidasin homolog OS=Homo sapiens GN=PXDN PE=1 S... [more]
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