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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071654 ID=TCONS_00071654|Name=TCONS_00071654|organism=Clytia hemisphaerica|type=transcript|length=4497bpRun BLAST on NCBI protein sequence of TCONS_00071654-protein >TCONS_00071654-protein ID=TCONS_00071654-protein|Name=TCONS_00071654-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1315bp MCEEITRQEQEQQFEEELRKASTHYENESESSSTTSENHGIEELNDGKWDRun BLAST on NCBI transcript from alignment at scaffold_63:448264..489209+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00071654 ID=TCONS_00071654|Name=TCONS_00071654|organism=Clytia hemisphaerica|type=transcript|length=40946bp|location=Sequence derived from alignment at scaffold_63:448264..489209+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_63:448264..489209+ >TCONS_00071654 ID=TCONS_00071654|Name=TCONS_00071654|organism=Clytia hemisphaerica|type=CDS|length=3948bp|location=Sequence derived from alignment at scaffold_63:448264..489209+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00071654 vs. Swiss-Prot (Human)
Match: KI26B (Kinesin-like protein KIF26B OS=Homo sapiens GN=KIF26B PE=2 SV=1) HSP 1 Score: 365.54 bits (937), Expect = 5.710e-103 Identity = 237/558 (42.47%), Postives = 345/558 (61.83%), Query Frame = 2
Query: 635 LADKDKENTPSAASFFLRAAQKLNLGANTTKQQKASXXXXXXXXXXXXXXXRGGDTVAIDNTRNIFLMNTSEMIMRTPPHAPPSLFKHGVTRRGDCHG--KVRVILR---TTNRRRGASDSCLTVDAKKKQVSLRESTITTTSNDGGQTSSSKRFDKAP-RIYSFDNIFTQETTQQEICSGTLVDLLHTVVNGNDACMLTYGYPKLGKSSIMVGKDNSVDNIGVIPCAISWLYQLIDDRKQRTGARFSVRVSAVEVVGKSENLKDLLGEQGNGSMCSSNGGTSPSIYLPRERASSIQLSDFTELRAPNAEKAAFYFDAAVSSRTTPIPVVNENGEVIEDPDERRNSNMIFTLHVYQYMIDKVGTGEIHGGRSRFHLIDLSGCSRK-KRSRDSGQGAWLPLSALGNVIVSIANGTKHIPHRDSKLTTLLREAMGSLSARITMIANVSQEPKHCFETLATFQMAXXXXXXXXXXXXXXXXXXXXXXXXXCDERKKHRRRCKPVTPLLRTDTCQSDH---HVXXXXXXXXXXXXXCDTVIYLGPGGRCLSDRDLTDFEHPP 2278
+A + T AASFF RAAQKLNL + K + ++ + + +F + S ++ +PP APP L + V + D G KV+V+LR T R S S L VD +KKQ++L + GGQ + KR ++ P ++++FD +F Q+ +Q E+C+GT+ +++ +VVNG D C+ +G+ KLGKS M+GKD+S+ N+G+IPCAISWL++LI++RK++TGARFSVRVSAVEV GK ENL+DLL E GS+ G SP +YL + QL + +ELRAP AEKAAF+ DAA++SR + + D D+ RNS++ FTLH+YQY ++K G G + GGRSR HLIDL C + ++R+ G G L LSALGNVI+++ NG+KHIP+++SKL LLRE++G+++ R TMIA++S ETL+T Q+ASR+ R +K+K++Y+S +S + RR + P T D H+ S+ +S++E+SCDTVIY+GP G LSD++LTD E PP
Sbjct: 372 VASETSTGTSVAASFFARAAQKLNLSSKKKKHRPSTSSAAEPP---------------------LFATSFSGILQTSPPPAPPCLLR-AVNKVKDTPGLGKVKVMLRICSTLARDTSESSSFLKVDPRKKQITLYDPLTC-----GGQNAFQKRGNQVPPKMFAFDAVFPQDASQAEVCAGTVAEVIQSVVNGADGCVFCFGHAKLGKSYTMIGKDDSMQNLGIIPCAISWLFKLINERKEKTGARFSVRVSAVEVWGKEENLRDLLSEVATGSL---QDGQSPGVYLCEDPICGTQLQNQSELRAPTAEKAAFFLDAAIASR--------RSHQQDCDEDDHRNSHVFFTLHIYQYRMEKSGKGGMSGGRSRLHLIDLGSCVKALSKNREGGSGLCLSLSALGNVILALVNGSKHIPYKESKLAMLLRESLGNMNCRTTMIAHISAAVGSYAETLSTIQIASRVLRMKKKKTKYTSSSSGGES----SCEEGRMRRPTQLRPFHTRATVDPDFPIAHLSSDPDYSSSSEQSCDTVIYIGPNGTALSDKELTDNEGPP 887 The following BLAST results are available for this feature:
BLAST of TCONS_00071654 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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