TCONS_00071679 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071679
Unique NameTCONS_00071679
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2347

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071679 ID=TCONS_00071679|Name=TCONS_00071679|organism=Clytia hemisphaerica|type=transcript|length=2347bp
GCGGAAGTTTAATATatgatttctgaaaaatatttcatatttcaatattt
catttcatGTGTGTTTATAGCGGCTTGTAAGGATATAACGACTTTAATTG
AACTAATACGTATaagaataacaaaaagaaatatttcttctgTATAAATC
GATTGTACTCATTTTGGGAATGATAATAGAAGAGATAGATGTTCTCGCTT
GGTGGTTGTAACCAGGAAGCCAAAGCTTTACAAGCTTTCGCATTAACTTT
GCTGCAGAAATGAAGGCGTCAAAATGTCTTCGTGTGATGCTTTGCGTTGC
CGCATTGGCAACTTTATGTCATGGTGGGAGTTTAAAGAAGCGTCTATTTG
GTGCTTTAAAGAAACTTGGCATGGACGCTGTCAGCAGTTACGATCCTACT
CCGGATGTCAAAGAGAACGTTCTTAATCCAACCAAAGGACGACGTGTTTA
TTCAGAAGCAAAACATCGATTTGAATTGCAAAGAGAACGTCTAGCTGGAT
TTAAGGATCCAACCGTAGTTGAAGGAGATCTGAAGAACTTATCACCAGCC
ATCAAGAATTTGATCAATGGCAAAGCAACAAAGAGAGAAATTATGTCAGC
GGTAAAATGGCCAGTTGAACGAGATGGGGATGACAAACCCGTTGTTAACA
TACCTTACGTCAACGATGGACTTAGTGACAATGGTAAACAAGCGCTAGAT
GCTGCTATTGAAGATCTCAAACAATTCACGTGTATTCGATTAGCACCAAG
AACCTCACAAGCTGACTACATTCGATTCTTCAAGGGAGAAGGATGTTTTT
CAACAATCGGTCGAACTGGAGGCAAGCAAGATCTTTCCATTGGTGGCGGT
TGCGGGTACAAAGGAACCGTGCTCCATGAAATCATGCATGCTTTAGGATT
CTTCCATGAACATACCAGACCTGACCGTGACGATCACATTATTgtcaaat
ttgagaatatcatcGATAATATGGAATTCAACTTCAAGAAATATCCACAT
AATCTTGTCACTGACTTCAATGCACCttatGATCTTCACTCGGTCACTCA
TTACAATCAGTATGCATTCAGTACTGGTGTCGGTGTCCAAAGTATCCAGC
CTAAAGATCCAAGTTTCGATGTCAACAGCATGGGACAACGTTTTGGTATG
AGTGTCACTGATGCCGCTCAAATTCGTGCTGCTTATTGTGAACAACCCTT
CACTACAACAACAACCAGCACAACGACCACTATTCCACCTCCTCCAGTAC
TACCTACTACTTCCACCACCACTTTAGATCCTGATCTTCTGAACCCACCA
ACAACCACCACAACCACATTAGTCCCACCCCTCCTTCCAACGACAACTAC
AACCTTAGTCCCACCTTTGGATACCACCACCACGACTACCACCTTGGTCC
CACCCCTCCTTCCAACCACCACTACAACTACCACTTTAATCCCACCCATC
CCAGTCTTACCCACTACCTCCACCACGACCTTAGATCCTGATCTcctcaa
aacaacaacaacaacaactttaCCAGGACAGACTACCATCTCAACGACCA
CCTCTACCACACCAGTCCCTGGAGAAGAAAACGGCTGTCCAATGCCTCCC
TGTGAACAATGTCAGAATCCAGCATGCGGTCAACAGCAAGGGGGTCAGTG
CCCTTACCAAGCACCATGTTGGCCATCAGACTTTATGTGGTCAAATACTG
GATTTCCACAGACTTGTGGTTGCAACGGTGATCAACAACAATCTCAAGac
cagcaacaacaacaaggcCAAGATACCAACAATAATGATGGTCCAACTGA
ACCAGCCAAAGATGAGAATGATAAACGATGCAATATGTGTAAATGTcttt
caatcaaatcaaaatcgACACCAAAATCATGGGAACATAACCATTTTTGT
TACAAACCAGGAAGTCATGAtccaaacttcaaaatattaagaaacgGAGA
TATTGCCGGAAAACGATGCTTGTTGATTGATGACTCAAAAGAATCGGACA
ACCTTCatctttgttttaataaatCGGCACCGTATGATTTGTCATGGTCT
GACGTCGACCAGACGGATGTTGATGGAAAATCGCGATGTTTGAAGATGGA
AAACCCACATGATTGGGCATGGGGAAAACAGAAGTTCCTTTGCCAATCAC
CACCAAactaaaatcaaaaagatttgtttcacgtcattttttaactttta
caaCTTATGCatatttgttttgttcattttcaacaaaagaaattattttt
gatataaTGAATTGTAAATAAAAAGAACTATAAAATATAACTTCTTTttg
agttttccaaaaaattgagtcAGTGATCCTAAGATATCTTGGCATCC
Run BLAST on NCBI

protein sequence of TCONS_00071679-protein

>TCONS_00071679-protein ID=TCONS_00071679-protein|Name=TCONS_00071679-protein|organism=Clytia hemisphaerica|type=polypeptide|length=633bp
MKASKCLRVMLCVAALATLCHGGSLKKRLFGALKKLGMDAVSSYDPTPDV
KENVLNPTKGRRVYSEAKHRFELQRERLAGFKDPTVVEGDLKNLSPAIKN
LINGKATKREIMSAVKWPVERDGDDKPVVNIPYVNDGLSDNGKQALDAAI
EDLKQFTCIRLAPRTSQADYIRFFKGEGCFSTIGRTGGKQDLSIGGGCGY
KGTVLHEIMHALGFFHEHTRPDRDDHIIVKFENIIDNMEFNFKKYPHNLV
TDFNAPYDLHSVTHYNQYAFSTGVGVQSIQPKDPSFDVNSMGQRFGMSVT
DAAQIRAAYCEQPFTTTTTSTTTTIPPPPVLPTTSTTTLDPDLLNPPTTT
TTTLVPPLLPTTTTTLVPPLDTTTTTTTLVPPLLPTTTTTTTLIPPIPVL
PTTSTTTLDPDLLKTTTTTTLPGQTTISTTTSTTPVPGEENGCPMPPCEQ
CQNPACGQQQGGQCPYQAPCWPSDFMWSNTGFPQTCGCNGDQQQSQDQQQ
QQGQDTNNNDGPTEPAKDENDKRCNMCKCLSIKSKSTPKSWEHNHFCYKP
GSHDPNFKILRNGDIAGKRCLLIDDSKESDNLHLCFNKSAPYDLSWSDVD
QTDVDGKSRCLKMENPHDWAWGKQKFLCQSPPN
Run BLAST on NCBI

transcript from alignment at scaffold_63:736270..749336+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071679 ID=TCONS_00071679|Name=TCONS_00071679|organism=Clytia hemisphaerica|type=transcript|length=13067bp|location=Sequence derived from alignment at scaffold_63:736270..749336+ (Clytia hemisphaerica)
GCGGAAGTTTAATATatgatttctgaaaaatatttcatatttcaatattt catttcatGTGTGTTTATAGCGGCTTGTAAGGATATAACGACTTTAATTG AACTAATACGTATaagaataacaaaaagaaatatttcttctgTATAAATC GATTGTACTCATTTTGGGAATGATAATAGAAGAGATAGATGTTCTCGCTT GGTGGTTGTAACCAGGAAGCCAAAGCTTTACAAGCTTTCGCATTAACTTT GCTGCAGGtttgtgtttttgtttgttttttggtaACCCAAAAGTCAATGa attataagcccgaagggctagaatcgaatctccttggtaggatttgaagc caacaaatcctaccaaagttgcgcggcttAGCCTGGTTTAGTCCGTCATT AAAAATACGgtgcatattttaaggcttcactttttcttggctgcgaaagg ttagagattcgatTCTTGCCCTTCGGTAGTGTATCTTTTTTCTCAGGCAG TGCCCCCCCATCGGTCGATTTTTTTGGGGCGCTGGAAAAAAAGGGCAACT TTATCGTTCCAAGCTAAAAAGATCTACtgatggttttagagtgcaatttt ttacattgaatttcgaatttgaaagaaaagtcCATTTCCCAGTGGAGCTG AAATCGTAGGTTAGCTTTTTCACACGGCTGACTAAATTTTGGtcgaattt tccagtggggcagAGGTGCCACTGGaactgtgacacaggggtgtatgttT TTCACTGTTATGCGTTTCAGTGTTTAAATTCGGATGATTTTTACTGCATA TATCTAATAGAAATTTCTCCTCCAATAGCCATAAAAGTGCTATCGAATTT TATCTCACCATGCAATATTCCTTTAgataaatacacgtttttttctttat tagaacccagtttataaagAACATTCAGGCTGAAATTAGTCGANATGGCA GAAGAATTAACAACAGAAATTTGCAATcttagaatttaattttccaCATC CCACATGTAGGATATATCTTTCGAATCTTACTAGTGCACCTTCTCTGTCC TACTCTTTGTCCTTCTGACTTCCTTTTAATacaattatgtttttgattca ctttcattttccctTACTCTCTAGAAATGAAGGCGTCAAAATGTCTTCGT GTGATGCTTTGCGTTGCCGCATTGGCAACTTTATGTCATGGTGGGAGTTT AAAGAAGCGTCTATTTGGTGCTTTAAAGAAACTTGGCATGGACGCTGTCA GCAGTTACGATCCTACTCCGGATGTCAAAGAGAACGTTCTTAATCCAACC AAAGGTATCGTCCTATGTTTATATTTACTTACTGGCTAGCCTGGGGTCCA CTTAATACTTTTTACTGGCTAGCCTGGGGTCCACTTAAtacttttttata gactggatggttCGATTAAGTGGCCCAGTAGTATGTCGTAacatgctttt gcttaggcggactgtaaaaccgTCCgtcagattttagttgttttttgtaa ggtaaaaacagtatgaagcaatgtctttatttgagaataagagattacaa atctgttattgatgtttggtTCAACTCCTAGTAGcttattttgctatttt gaattttcatgtCTTCAAAATGGCGACTTCGTTAATTGATTCTAATCTAC TTCACTGTACTCAGCGGCATAGAGAATTATCGGAAAGCAAAGTTCaacca gaagtagactctagtcaaGGCCTAAAAACAAGGTAACAACTTCAGGTCAA GTATTTAAAGGAAATAGGTTAACATTTGAAAAGAAACTAGAAAATTCATG TAGAGAATTTGACAGGTTCCtgacattcaaaaaatttgattttcacgata gGCTCCCATTGGTTTGCGTGATAGCGCATTATCAAATTTGATCTGCATTT TTACTGTGCAGATTTATTggaaatggtaaaaataatgttcccaaaaaaag ttttagaTTCATCATAAATTTACTTTCTCATAGGACGACGTGTTTATTCA GAAGCAAAACATCGATTTGAATTGCAAAGAGAACGTCTAGGTAAcatatt tgaagtattttacCAATTATCTTTCTTGCATCCATCTTTGCAAAGACCTC TATCTAAATGCCACTTGGTACcatcatttttccaaaaataaaaatgaccG AAATGTTTTGAGAAATATACTTtaaactacaatcatggtccaCACGAATT CTCAAACCACAAACGATTAGGGAGCGCTCTAAGTTAGTTTGGAAGGgtaa agttttaactctgatagttttttaacgctagacttaagaccttaggatct gaggatccaacagttcaaaaatggtccaataaggctcagaatataacctg gaagtctataaacccgtgccaaattgaaatatccgattaaatttaagaga tggcccaaaattgTCTCTCTTGCTCAAActcgaaatttcgaaaaacgagg aaataggctaaattctcaatatattttgaccatgattgagAGAGGTAAAG ACACTATTAGAAGATAGGTATGTTTTCTGCAAATAaaaattgttcaattt tttAGATATTATTTAGATCGATTGAAATCATTAACATTTTGTGTAGAAAC CTCTTCGACAGAAACATCCAAGCTTTCCTAGTATATTTGATTTCCAGCTA CTCCGCCGTTAagtatcccagctggcacacaatgttgtttcaacgttcag cTAACAATATCTGGACGTTGAGAACATttgataaacgttgaaacaaacGT TGTTTAACAACTGAGATGAATAGAAATGTACTTTCCTTCGATTTTTGGAG AATATCCATTTTTTAGCATATTAAATCCATCATTTTTTCGTTTTAGCTGG ATTTAAGGATCCAACCGTAGTTGAAGGAGATCTGAAGAACTTATCACCAG CCATCAAGAATTTGATCAATGGCAAAGCAACAAAGAGAGAAATTATGTCA GCGGTAAAATGGCCAGTTGAACGAGATGGGGATGACAAACCCGTTGTTAA CATACCTTACGTCAACGATGGACTTAGTAAATATTTTATACATTAGACTC TATTACTGGATATTTCTATATTATATTGTCTAGTACTTGgaggcaaaaaa acatatcCTCAAAAAATGTTTCGTTCCCCTGTTATGCGCAGTTTCCTATT TTGTTtgcgcacttttgtaattttgcagttttttcgcaaaaattacaaaa gttcgcaaaaaaaattacaaaactgcgcagAAAACTACAAAAGTGCTTTA ACTTATTATTTCTAACCATTTAAAAAGGTGACAATGGTAAACAAGCGCTA GATGCTGCTATTGAAGATCTCAAACAATTCACGTGTATTCGATTAGCACC AAGAACCTCACAAGCTGACTACATTCGATTCTTCAAGGGAGAAGGGTAAG GTNGGCACCAAGATCCTCACAAGCTGACTACATTCGATTCTTCAAGGGAG AAGGGTAAGGTGCTCATATAATTTATTTTAGATGAGGTTATTGCCAGACT TCACTTCGGATCaatattgtttttcaaaaatgttttccagAGAAATATTC TACAACGAACTAAAGGTTTCATTCCGGGGGcgggggacttaggcaaaatt gggtacggagACGTGTTGCTAGTCAGGGTCCTTGACAAGGATCCAGATTT GCCaaatattcatatctgacagggtctatttttcTAACTTCAGCGGTACG TCCCCGTTGGCAGTCAAGGTCAGTGCCTCTCCCGGGTCTCATTTTATAAT CAGCACGATAATACCATTGTTATAGAAGAAgcagattttttcttcttcgt ttttcatgtTGTTACAaaggtttttgaatttttctttttgataattttcc acTCCTGATTACCTTATATTGGGACAGACTTTTGATAGATCTTCCATTTC CATGATATTAGCACACCGTTTGATCATCTCATTTAAGGCTGAACTCTCTT AGTAAAATTAATCCGAGTATTGTCTGATAATTCGAGTTTTTACCATAGAT TTCTGTATAGCCCGAAGGGCAAGATGtagtgctttaagctcttccgagca aaaaagtgaatatcgcaaaagatattgttgctattgttttctaAAACCTG TAATGTTCttttgtaatgtcacgtgacttaggtaggatttcctatctAAC CTCAGTACACTTTTtagacatctagcccttcgggatttataaatctatga tctATTTTTACACTTCTCGAAATCAAATGTTTTCATGATCCAGGCGCGCT TTTTATCCCTTTCCGAATTCTTTAAAAACTGCTCTCAATTCTCCAAAATA AAGAGTTTAGAGTTCCCTGTGCAAGCGTTAGAGTTATAGAGGATAAGGAc aatttacattttatttcTAGATGTTTTTCAACAATCGGTCGAACTGGAGG CAAGCAAGATCTTTCCATTGGTGGCGGTTGCGGGTACAAAGGAACCGTGC TCCATGAAATCATGCATGCTTTAGGTAAGTTGTTGGAAAGGACATGAATG ACTCTATATGATTTAAGCttcttttattcgaatctttctctaaattAAAC TAAACCATAGGTTTTATTCTGTAATTCAGATATTCCAGTAATTCGAAGAA GATATAAGCTTCGTAAAGATCAAATTATAGAGATTCAACTGTATGCTTTA CATCTGCCTACCTGCCAATTCAAATATGTGTCACACACCCAATGGGATCC Aacccccactggaaaatttagcaaaaatttcgtccccggtctggaaaaat accctaaaatttcatcccctttggaaagtcaatgtttaaaaaattgcact ccaaaaccatctccactgaattttttaaccttggaacaatctATTTATGC tgttgggatttcaataggagtttttatcctcactgagaaaaaagttccac cggggctgtgagacagggatgtatttAACtaaccaatatttttttctgtt atTCTAGGATTCTTCCATGAACATACCAGACCTGACCGTAAGTGACTTTC CTTAATTATATTACCAAAACGTCAAAGCGAGATCAAGAAGACAGTCTCTT AGTTTAACGTAGTATTTATATACAAAtagttattttaaaatttcaaaaaa tcaattttgaaaaagaaattgagattttgaaaacaattgtACACAGGAAA GACTAAGGAAAATCATAATATCGTACCCAAAACCAAATGAACCACTTTTT CATTTTACTGTTAGACATGATACAACCCGCTATCATAATCATAAAAAGGT GAACTAAGGAACTGGgttcgaatttgaaaaaaaatcaattataaAGTCAA GTcacaaattttaaaccttttttttaataGGTGACGATCACATTATTgtc aaatttgagaatatcatcGATAGTAAGTCAACCAACTGAGGACCACTTAA CCTCGTTCCTAGTCTCTCCTTATTCATAGCGCATGGGTTTTCTCTGGCGT TCATCAGTAAAGTAAATAAATTCTTGGATACATGGAGACATATGATACTA TGTTTCAATTGCATAAGTCTTGACCCGAAAGTACACAAGATTTCTATAAC GCCCTATTTCTTGAACCTGAGAATCTGTTGGTAAAATGGTATATCTTTTG AGATTGATAAAACTGATCACGAATTAAATCATTACAAATATTCCTGAAAT AGTCTCTCAGCAAGCGGCATAATGAGTGTTTAGGCCGGTCTCCAATTGCA CGCGCTGCGACCACACTTTCTCGAGAAAAGTTTCCaagctattggtcaaa agaaaaatgaaataattccATTAGCGTGatttgacgtaacggttgaaaaa agttgaaatgtattcaacttttttttcgagctcGCACTAAATTTTTacga cgtaatcttttttccgaGCAAAAGGGGTcgaagccaaaaggtgcgattgc agcgcgcacaaaggagaccggcctttacttGAAGGATGGATCCGGAACAA AGCTTCGGAGAAACAAAGTCGAAAAGTACAAACCTTTCTAACTATTCGTT ACTCAATGTAATATACACCCTTATTTCAATATATCGTTGGAGCTTTTTCC AAAAGTGGtgttgaaaatttctatcgagtTTCCAGGACGGAAATCTATCA TTCCAGCTAAAAACGAAAGTGAGACTGAAATTGTAGGGTGGAGTGACCAC CAAATCTGTGACATGAGGGTTGTTAAAATTGTTGGTCTTGCCTAAAGGCC TTTCATCGATCGCACGAGCGTGCACGCTAGGCCaatattcttaaaataga tttggccgcacactccgcgcgatcaatgtttgatttccatcaaaaacata cACAATCTATATgcttacatttttttgtttactcagcagtttttctcttt cttgattggtttaaaaattaTCGATTGAGAAGTGCGCTCCTGTACgctaa aaaaagttgaaaattgtcAGGAAAATTTAATTCGTGACGTCAATAggcta ttttaggaaattttgcccTAGCGTGCCCGCTtgcgcgatcgatggaaaca ggccttaaAACATATGAGTTTATCTGTCATCATTACATAATATTCTAGAT ATGGAATTCAACTTCAAGAAATATCCACATAATCTTGTCACTGACTTCAA TGCACCGTAAGAATGTTTATACTACTTTTCTGACTGAAGTATTCCGTGAT TTTGTAATTCAACGCGTACTATGGGATATGAGGAAAAAATCTGAATTAAT CTCACTCTAATTCTTAACATGTAGCAAAAATTTAGTCCTAATTAACTGTT ATCTAACTACTACGCGTGGTCTTGCACTTCAAAGAAACTTTAGCTTTACC GAGAAATGAGAGAATGGAAGCAGATTCGAGTATCTCCTGTAACcctatga aaaaacttttagaaaaagtcaatttcataCCTAGAGCCACTTGcacaact ttttgattttactaaaTAAAAAAAGCGAACAAAGGGTCTGGattcgagtt tgaaaaatgatatatttttattttttagttatGATCTTCACTCGGTCACT CATTACAATCAGTATGCATTCAGTACTGGTGTCGGTGTCCAAAGTATCCA GCCTAAAGATCCAAGTTTCGATGTCAACAGCATGGGACAACGTTTTGGTA TGAGTGTCACTGATGCCGCTCAAATTCGTGCTGCTTATGTAAGATTTACT CTGTCTGTACAGTTTTATTAATgagattaattttgaaaaaaatcggaTAT ATAACATAGAGTTTTCAAGTTAATTTTTATTCGTCGCACATGTAGAATTA TAtaaaagtctgtctcgaaataatttgcagctggagaaaaaaatggctgt aacttttgatagaattcgaaccaagttgcggttttgtgctcgttaaaaag atattcgtgagtggaatattatcaagtaaaaaaattgagaaaaaaaaagg aaaatgaaaatgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtat ctttttaacgagcacaaaaccacagcttgattcgaattctatcaaaagtt acagctatttttttctccagctgcaaattatttcgagacagactttagta accTCTTGtaggaaaacaaaaatatttttgagctaAGATCCTTTTTGAGA GTTCCAACGCATTTCTTACAaagatttaatgaaaatttaagCCCACCTCA ATTAATTTTATTTATAGAGTTTTACAGTTAGGCACACTGGGCCTCTAACC CACTCTTCTTACAATCATGTTGTTTCCGTCGTGAATTTCTTCAAATAGAA TTTAGTCCTATAGGACTACCTCTCAATTTCCATATATCACTCTTGTCTTT TTCTTTCCATGTTTTTTGCTTTATGATGCCATTGTTTTATTATCTCGCGT TCTTTCCTTGAAAAGTCGTCTGATACTCTGAAATCATCTTTATCTAGTTT GTGGGCTGATACAATTCTAATCCTTTCTTCTTCACTCTCGAGAGTAACTT CTAATGGTCTCCATCGTTCATTTGTATACATTTATGCGATCTACCTTGAT TATCGTCACATCGAAACCcatttgtttttcaatattCTTTCTATAAAATC TTTGTAACCAACTCGTTGCTCTTCTTCGTTTTCGTGCTTGTTTTCACCTA AATCATGCACCATGATGTTGCACTTGGTTGATTTGAGCCAACGCTCCTCT TCGTTTGATGAAACTTTTTATAGTAACCTCTTGTTTTTGTAGATCTTCTT TGGTGACTTCTGCATAtgattgttgttttttgtttctgtGTTGTTGAGCT GTGTTTCAGATCATTTGTTGTTCCGTTCTTTGTTCACgtcttttttattc attagcTTCTCGACTTTCCTTTCTAGAGAGGTTATTCTCTCGTTGAAACC TAATTTCAATCCATGATGTTCATCTTTATTTGCTTCTTTCGTTGTGATGT TACTGCAAGCTTTTGGTCTGCTTGTTTTAATCCTCTCAAGTAAGAGTGGC GTTATTGGAACACAATTTCCACATTCGAAGCGCCGGCTTTCATATTGCAG ACAAAGCTGAATCTGATTGGCCGGGAACTCAGAGCCCGAgggaggggtac tagggttggcaaatgaggggtatgtgcagacgggacctccgaaaaccgac ccttagagaaactgatttttgctgaaaaggtgacccttagagagactttt tgaattctttttttcgatttttgaaaaaagtcataaccttagagagactt tattgcaatattttctctggaaatcaaaaaatttcctaaaaatcctggat ttaccgacccttagagagactaatttaaaactttctgagttttccgaccc ttagagagactttgaaagatgaaaaaccgacccttaccgtccgcacatac ccatcatccatttttgcctaagtacccccccccccccgggNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNcccccccccccccggggctcaGA GCAAGCATAATGGACAAGTCTATCACATCTCTTACATTGTAAGGTGTCGC TATCTGCTATGATGGTGTTTGTTTTAAACAGTTATTGGGTGTGCAATATC cataattttgttgaatttccttTTCAGAATTTTCGTCGATTTCCGCCATA TTATTGCATTTTCAGGATCGTGGCAGCACAGAAAAAGTTTTacgtcaaaa ataatttaatccAATGTTTTTTCCTTTACAAAATTCAGTGTGAACAACCC TTCACTACAACAACAACCAGCACAACGACCACTATTCCACCTCCTCCAGT ACTACCTACTACTTCCACCACCACTTTAGATCCTGATCTTCTGAACCCAC CAACAACCACCACAACCACATTAGTCCCACCCCTCCTTCCAACGACAACT ACAACCTTAGTCCCACCTTTGGATACCACCACCACGACTACCACCTTGGT CCCACCCCTCCTTCCAACCACCACTACAACTACCACTTTAATCCCACCCA TCCCAGTCTTACCCACTACCTCCACCACGACCTTAGATCCTGATCTcctc aaaacaacaacaacaacaactttaCCAGGACAGACTACCATCTCAACGAC CACCTCTACCACACCAGTCCCTGGAGAAGAAAACGGCTGTCCAATGCCTC CCTGTGAACAATGTCAGAATCCAGCATGCGGTCAACAGCAAGGGGGTCAG TGCCCTTACCAAGGTACAAAATTCAATACTCGATTGTTAAGTATCAAATT GAGAATGAAAGATTGAATAATCAAGAAAATCACGTTTTGTCAGTTTAATT ACAAATGGAAAATAAAGAGAATGTCATTAGCTTTTAACTTTATAATCACT GAGAGCTGACGATGAAGCTAAGAGTTGCGAGTCATGGATTAGGATGTCTA GCTTTTCTCCAATGGTGTTGACTATTGAGAAAAGGTTAAACATTCTAAAT CTATGTGGTATCCCTATCATTTCTAACTACCTTTTATGACTTCAACTCTA GCACCATGTTGGCCATCAGACTTTATGTGGTCAAATACTGGATTTCCACA GACTTGTGGTTGCAACGGTGATCAACAACAATCTCAAGaccagcaacaac aacaaggcCAAGATACCAACAATAATGATGGTCCAACTGAACCAGCCAAA GATGAGAATGATAAACGATGCAATATGTGTAAATGTctttcaatcaaatc aaaatcgACACCAAAATCATGGGAACATAACCATTTTTGTTACAAACCAG GAAGTCATGAtccaaacttcaaaatattaagaaacgGTAAGTTTTTTAAC AgtcctgtctcagtgccccggtggaaaGAACTTATTCCCTTAGGCAAGGc caatttgttgttttacaggcCAAGCTATCCAAAAAAGAGGTTGGTCGGTT ggcgaaaaagtaaaaaaggtagaatttcacctataaaatctcctaaaaag gcagcaaaaactacttctttttgataaaaatgcgaaatagaaaataataa GGTACAAAAAGGTCGATTCAtggataaattgaaaaattgaacataaaatt gtcaaaaccttggaaaaactaccaaaactttgaaaagcAACGATAACAAA AATGTACTACCGAAATCAATTTcgtttttatttcgatttttggaatatca ggatcggtcgggcccgtaaaacaataactgatcaaattggtctcgtctTG GTGGGGATTAAAATTTATACCGAAAATTTGTAGATatatttctatcaaaa tatTCAGTGGATGGTTTTGCAATATCAGAGTTGGCTTGGtatgggctatt tttcgctattttttgggtgatgataatttttagtgattttcgtGGTCGTG ATGAAAACAGATAATTTAGCGTTATAGCGTGATGAGAGGTATCACTTGGG GAGTCTCATCTAAACCCGGCACatattttgtttgataaatctAATTATTT TGTTTCTTCACCGACTTTTTTATCACTTTGTTTGATACAGGAGATATTGC CGGNTGGGTGAAGTTTTAGTGATTTTCGTGGTCGTGATGAAAACAGATAA TTTAGTACCGTGCAAAGCACatgtcaaaatcatatattgacgctgtgccg acgaatcgagattctattcatcgcgcaatcaacaaagacaaaagtaacct TGACGACCATTCAAGATCTtagatgaagttcaaagttgatgtttttattc ccgtcgttgaaagcacaactaaaaaatattatcaatgctttttaaaaata gtcagtgatagagaatcataacataaagtctgtctattatttcgattcaa ttaaagtgacatttccataattaatagtttagttattactgttatacatt tggggatcatgtaaaagatttctttcgaaagaaactcacttcaattacac ttggaggtttctggggaattcgtaaatagNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcagtctgctagacat taataaggtaatatttgctcttcatctttgattctttctacagttataag attgacacatgcgcaataaaatttcattattggtcttcagaggttaatat attctttgaaaacttaacctctgatactcagggtaataaTTTAGCGTTAT AAGCGTGATGAGAGTTATCACTTGGGGAGCCTCATCTAAACCCGGCACat attttgtttgataaatctAATTATTTTGTTTCTTCACCGACTTTTTTATC ACTTTGTTTGATACAGGAGATATTGCCGGAAAACGATGCTTGTTGATTGA TGACTCAAAAGAATCGGACAACCTTCatctttgttttaataaatCGGCAC CGTATGATTTGTCATGGTCTGACGTCGACCAGACGGATGTTGATGGAAAA TCGCGATGTTTGAAGATGGAAAACCCACATGATTGGGCATGGGGAAAACA GAAGTTCCTTTGCCAATCACCACCAAactaaaatcaaaaagatttgtttc acgtcattttttaacttttacaaCTTATGCatatttgttttgttcatttt caacaaaagaaattatttttgatataaTGAATTGTAAATAAAAAGAACTA TAAAATATAACTTCTTTttgagttttccaaaaaattgagtcAGTGATCCT AAGATATCTTGGCATCC

Coding sequence (CDS) from alignment at scaffold_63:736270..749336+

>TCONS_00071679 ID=TCONS_00071679|Name=TCONS_00071679|organism=Clytia hemisphaerica|type=CDS|length=1902bp|location=Sequence derived from alignment at scaffold_63:736270..749336+ (Clytia hemisphaerica)
ATGAAGGCGTCAAAATGTCTTCGTGTGATGCTTTGCGTTGCCGCATTGGC
AACTTTATGTCATGGTGGGAGTTTAAAGAAGCGTCTATTTGGTGCTTTAA
AGAAACTTGGCATGGACGCTGTCAGCAGTTACGATCCTACTCCGGATGTC
AAAGAGAACGTTCTTAATCCAACCAAAGGACGACGTGTTTATTCAGAAGC
AAAACATCGATTTGAATTGCAAAGAGAACGTCTAGCTGGATTTAAGGATC
CAACCGTAGTTGAAGGAGATCTGAAGAACTTATCACCAGCCATCAAGAAT
TTGATCAATGGCAAAGCAACAAAGAGAGAAATTATGTCAGCGGTAAAATG
GCCAGTTGAACGAGATGGGGATGACAAACCCGTTGTTAACATACCTTACG
TCAACGATGGACTTAGTGACAATGGTAAACAAGCGCTAGATGCTGCTATT
GAAGATCTCAAACAATTCACGTGTATTCGATTAGCACCAAGAACCTCACA
AGCTGACTACATTCGATTCTTCAAGGGAGAAGGATGTTTTTCAACAATCG
GTCGAACTGGAGGCAAGCAAGATCTTTCCATTGGTGGCGGTTGCGGGTAC
AAAGGAACCGTGCTCCATGAAATCATGCATGCTTTAGGATTCTTCCATGA
ACATACCAGACCTGACCGTGACGATCACATTATTgtcaaatttgagaata
tcatcGATAATATGGAATTCAACTTCAAGAAATATCCACATAATCTTGTC
ACTGACTTCAATGCACCttatGATCTTCACTCGGTCACTCATTACAATCA
GTATGCATTCAGTACTGGTGTCGGTGTCCAAAGTATCCAGCCTAAAGATC
CAAGTTTCGATGTCAACAGCATGGGACAACGTTTTGGTATGAGTGTCACT
GATGCCGCTCAAATTCGTGCTGCTTATTGTGAACAACCCTTCACTACAAC
AACAACCAGCACAACGACCACTATTCCACCTCCTCCAGTACTACCTACTA
CTTCCACCACCACTTTAGATCCTGATCTTCTGAACCCACCAACAACCACC
ACAACCACATTAGTCCCACCCCTCCTTCCAACGACAACTACAACCTTAGT
CCCACCTTTGGATACCACCACCACGACTACCACCTTGGTCCCACCCCTCC
TTCCAACCACCACTACAACTACCACTTTAATCCCACCCATCCCAGTCTTA
CCCACTACCTCCACCACGACCTTAGATCCTGATCTcctcaaaacaacaac
aacaacaactttaCCAGGACAGACTACCATCTCAACGACCACCTCTACCA
CACCAGTCCCTGGAGAAGAAAACGGCTGTCCAATGCCTCCCTGTGAACAA
TGTCAGAATCCAGCATGCGGTCAACAGCAAGGGGGTCAGTGCCCTTACCA
AGCACCATGTTGGCCATCAGACTTTATGTGGTCAAATACTGGATTTCCAC
AGACTTGTGGTTGCAACGGTGATCAACAACAATCTCAAGaccagcaacaa
caacaaggcCAAGATACCAACAATAATGATGGTCCAACTGAACCAGCCAA
AGATGAGAATGATAAACGATGCAATATGTGTAAATGTctttcaatcaaat
caaaatcgACACCAAAATCATGGGAACATAACCATTTTTGTTACAAACCA
GGAAGTCATGAtccaaacttcaaaatattaagaaacgGAGATATTGCCGG
AAAACGATGCTTGTTGATTGATGACTCAAAAGAATCGGACAACCTTCatc
tttgttttaataaatCGGCACCGTATGATTTGTCATGGTCTGACGTCGAC
CAGACGGATGTTGATGGAAAATCGCGATGTTTGAAGATGGAAAACCCACA
TGATTGGGCATGGGGAAAACAGAAGTTCCTTTGCCAATCACCACCAAact
aa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044526XLOC_044526Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071679-exon-scaffold_63-1491911889:736270..736526TCONS_00071679-exon-scaffold_63-1491911889:736270..736526Clytia hemisphaericaexon
TCONS_00071679-exon-scaffold_63-1510915933:736270..736526TCONS_00071679-exon-scaffold_63-1510915933:736270..736526Clytia hemisphaericaexon
TCONS_00071679-exon-scaffold_63-1575043694:736270..736526TCONS_00071679-exon-scaffold_63-1575043694:736270..736526Clytia hemisphaericaexon
TCONS_00071679-exon-scaffold_63-1491911889:737394..737573TCONS_00071679-exon-scaffold_63-1491911889:737394..737573Clytia hemisphaericaexon
TCONS_00071679-exon-scaffold_63-1510915933:737394..737573TCONS_00071679-exon-scaffold_63-1510915933:737394..737573Clytia hemisphaericaexon
TCONS_00071679-exon-scaffold_63-1575043694:737394..737573TCONS_00071679-exon-scaffold_63-1575043694:737394..737573Clytia hemisphaericaexon
TCONS_00071679-exon-scaffold_63-1491911889:738253..738309TCONS_00071679-exon-scaffold_63-1491911889:738253..738309Clytia hemisphaericaexon
TCONS_00071679-exon-scaffold_63-1510915933:738253..738309TCONS_00071679-exon-scaffold_63-1510915933:738253..738309Clytia hemisphaericaexon
TCONS_00071679-exon-scaffold_63-1575043694:738253..738309TCONS_00071679-exon-scaffold_63-1575043694:738253..738309Clytia hemisphaericaexon
TCONS_00071679-exon-scaffold_63-1491911889:739116..739295TCONS_00071679-exon-scaffold_63-1491911889:739116..739295Clytia hemisphaericaexon
TCONS_00071679-exon-scaffold_63-1510915933:739116..739295TCONS_00071679-exon-scaffold_63-1510915933:739116..739295Clytia hemisphaericaexon
TCONS_00071679-exon-scaffold_63-1575043694:739116..739295TCONS_00071679-exon-scaffold_63-1575043694:739116..739295Clytia hemisphaericaexon
TCONS_00071679-exon-scaffold_63-1491911889:739547..739641TCONS_00071679-exon-scaffold_63-1491911889:739547..739641Clytia hemisphaericaexon
TCONS_00071679-exon-scaffold_63-1510915933:739547..739641TCONS_00071679-exon-scaffold_63-1510915933:739547..739641Clytia hemisphaericaexon
TCONS_00071679-exon-scaffold_63-1575043694:739547..739641TCONS_00071679-exon-scaffold_63-1575043694:739547..739641Clytia hemisphaericaexon
TCONS_00071679-exon-scaffold_63-1491911889:739701..739723TCONS_00071679-exon-scaffold_63-1491911889:739701..739723Clytia hemisphaericaexon
TCONS_00071679-exon-scaffold_63-1510915933:739701..739723TCONS_00071679-exon-scaffold_63-1510915933:739701..739723Clytia hemisphaericaexon
TCONS_00071679-exon-scaffold_63-1575043694:739701..739723TCONS_00071679-exon-scaffold_63-1575043694:739701..739723Clytia hemisphaericaexon
TCONS_00071679-exon-scaffold_63-1491911889:740640..740743TCONS_00071679-exon-scaffold_63-1491911889:740640..740743Clytia hemisphaericaexon
TCONS_00071679-exon-scaffold_63-1510915933:740640..740743TCONS_00071679-exon-scaffold_63-1510915933:740640..740743Clytia hemisphaericaexon
TCONS_00071679-exon-scaffold_63-1575043694:740640..740743TCONS_00071679-exon-scaffold_63-1575043694:740640..740743Clytia hemisphaericaexon
TCONS_00071679-exon-scaffold_63-1491911889:741227..741256TCONS_00071679-exon-scaffold_63-1491911889:741227..741256Clytia hemisphaericaexon
TCONS_00071679-exon-scaffold_63-1510915933:741227..741256TCONS_00071679-exon-scaffold_63-1510915933:741227..741256Clytia hemisphaericaexon
TCONS_00071679-exon-scaffold_63-1575043694:741227..741256TCONS_00071679-exon-scaffold_63-1575043694:741227..741256Clytia hemisphaericaexon
TCONS_00071679-exon-scaffold_63-1491911889:741600..741641TCONS_00071679-exon-scaffold_63-1491911889:741600..741641Clytia hemisphaericaexon
TCONS_00071679-exon-scaffold_63-1510915933:741600..741641TCONS_00071679-exon-scaffold_63-1510915933:741600..741641Clytia hemisphaericaexon
TCONS_00071679-exon-scaffold_63-1575043694:741600..741641TCONS_00071679-exon-scaffold_63-1575043694:741600..741641Clytia hemisphaericaexon
TCONS_00071679-exon-scaffold_63-1491911889:742818..742875TCONS_00071679-exon-scaffold_63-1491911889:742818..742875Clytia hemisphaericaexon
TCONS_00071679-exon-scaffold_63-1510915933:742818..742875TCONS_00071679-exon-scaffold_63-1510915933:742818..742875Clytia hemisphaericaexon
TCONS_00071679-exon-scaffold_63-1575043694:742818..742875TCONS_00071679-exon-scaffold_63-1575043694:742818..742875Clytia hemisphaericaexon
TCONS_00071679-exon-scaffold_63-1491911889:743248..743407TCONS_00071679-exon-scaffold_63-1491911889:743248..743407Clytia hemisphaericaexon
TCONS_00071679-exon-scaffold_63-1510915933:743248..743407TCONS_00071679-exon-scaffold_63-1510915933:743248..743407Clytia hemisphaericaexon
TCONS_00071679-exon-scaffold_63-1575043694:743248..743407TCONS_00071679-exon-scaffold_63-1575043694:743248..743407Clytia hemisphaericaexon
TCONS_00071679-exon-scaffold_63-1491911889:746358..746832TCONS_00071679-exon-scaffold_63-1491911889:746358..746832Clytia hemisphaericaexon
TCONS_00071679-exon-scaffold_63-1510915933:746358..746832TCONS_00071679-exon-scaffold_63-1510915933:746358..746832Clytia hemisphaericaexon
TCONS_00071679-exon-scaffold_63-1575043694:746358..746832TCONS_00071679-exon-scaffold_63-1575043694:746358..746832Clytia hemisphaericaexon
TCONS_00071679-exon-scaffold_63-1491911889:747121..747405TCONS_00071679-exon-scaffold_63-1491911889:747121..747405Clytia hemisphaericaexon
TCONS_00071679-exon-scaffold_63-1510915933:747121..747405TCONS_00071679-exon-scaffold_63-1510915933:747121..747405Clytia hemisphaericaexon
TCONS_00071679-exon-scaffold_63-1575043694:747121..747405TCONS_00071679-exon-scaffold_63-1575043694:747121..747405Clytia hemisphaericaexon
TCONS_00071679-exon-scaffold_63-1491911889:748936..749336TCONS_00071679-exon-scaffold_63-1491911889:748936..749336Clytia hemisphaericaexon
TCONS_00071679-exon-scaffold_63-1510915933:748936..749336TCONS_00071679-exon-scaffold_63-1510915933:748936..749336Clytia hemisphaericaexon
TCONS_00071679-exon-scaffold_63-1575043694:748936..749336TCONS_00071679-exon-scaffold_63-1575043694:748936..749336Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071679-proteinTCONS_00071679-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_63supercontigscaffold_63:736270..749336 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0331878 0.0377572 0.0313141 0 0.0223778 0.0530497 3.79746 4.16431 4.50264 4.43408 5.29656 4.25509 19.1663 16.1805 5.98961 17.0385 8.42922 9.35894 0.0235196 0.00615288 5.62072 6.40922 5.06098 5.68515 20.5331 25.2738 1.13009 0.364248 0.0184179 0.0312749
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001506Peptidase_M12A
IPR006026Peptidase_Metallo
IPR024079MetalloPept_cat_dom
IPR034035Astacin-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004222metalloendopeptidase activity
GO:0008237metallopeptidase activity
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004222 metalloendopeptidase activity
molecular_function GO:0008237 metallopeptidase activity
molecular_function GO:0008270 zinc ion binding
Blast
BLAST of TCONS_00071679 vs. Swiss-Prot (Human)
Match: MEP1A (Meprin A subunit alpha OS=Homo sapiens GN=MEP1A PE=1 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 3.753e-35
Identity = 70/190 (36.84%), Postives = 108/190 (56.84%), Query Frame = 2
Query:  620 RDGDDKPVVNIPYV-NDGLSDNGKQALDAAIEDLKQFTCIRLAPRTSQADYIRFFKGEGCFSTIGRTGGKQDLSIGGGCGYKGTVLHEIMHALGFFHEHTRPDRDDHIIVKFENIIDNMEFNFKKYPHNLVTDFNAPYDLHSVTHYNQYAFSTGVGVQSIQPKDPSFDVNSMGQRFGMSVTDAAQIRAAY 1186
            RD + +    IPY+  D L  N K A+  A E  +  +C+   P   ++ YI F + +GC+S +G     Q++SIG GC YK  + HEI+HALGF+HE +R DRDD++ + ++ I+   + NF  Y  +L+TD N PYD  S+ HY  ++F+    V +I  K P F+ + +GQR   S  D  ++   Y
Sbjct:   69 RDPNTRWTFPIPYILADNLGLNAKGAILYAFEMFRLKSCVDFKPYEGESSYIIFQQFDGCWSEVGDQHVGQNISIGQGCAYKAIIEHEILHALGFYHEQSRTDRDDYVNIWWDQILSGYQHNFDTYDDSLITDLNTPYDYESLMHYQPFSFNKNASVPTITAKIPEFN-SIIGQRLDFSAIDLERLNRMY 257          
The following BLAST results are available for this feature:
BLAST of TCONS_00071679 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MEP1A3.753e-3536.84Meprin A subunit alpha OS=Homo sapiens GN=MEP1A PE... [more]
back to top