TCONS_00071695 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071695
Unique NameTCONS_00071695
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1646

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071695 ID=TCONS_00071695|Name=TCONS_00071695|organism=Clytia hemisphaerica|type=transcript|length=1646bp
AAAAGAAAGTCTCTTGGGACATCAAAATCGTAAAGATTCGACAGCAGCAA
AACTATAAATttaaaatgtacaaaatacGTTGTCACAAAAGCAGGTTTAC
AAGAGTCACAGTGAAAAGGCAGAAGCAGAGAGTCAATATCGTTGTCAGAA
GCAATACAAAACACAACAATTTCTACAAATGAACTCAAgcagAAACATGA
AGATTTTATGGTTGTCAATCATTTGTATCTCGTATTTATCGATGGTCGTC
CAAGCCAAATCAAACTTCTCAATAGAATGTGATACCCAAAAGATGACTAT
TTACATTCTTAAAGATACAATTTCAATCCCTGAAAGTGATCTTTCTCAAT
ACAATATTTCATGGTATGATTCTACTTGTGGACCAAGTGGAAAGTCCAAT
GAAACGCATTTGATTTTGGAGGCTGGTTATTCGTCTTGTGGGACTCGAGC
TATCGACAATGGCAATGACGTGACTTTTAAAAATCAGGTTTCGGTCAATT
TGAACGCTACAAACGCATATAAAAACAACTTATTGGAAAGGATTGATACC
TTTGCCACATATTCTGTTGAATGCAATGTCCCACAAGGTGTGAATGTAAC
ACATGAATATGGAGCCAATATCACCAAAGCTGATTTGGTCGAAGGAGTAT
CAAGTTCGACCGACCAATTCACTGTCTCAATGAATCTACATAAAGACTCA
AACTTCAATAAAAGTCTTCAATATCCTGCAGTTATTGATAGATTGGGACG
TTTCAATTTGGAACTTGAAATTGACACTGTTGCTGAACTGTCAATTATTC
CACGAAACTGTCATGGTACTTTAACTTCAAGCCGAGACGATGGTATTCGG
GAAGATCTTATCACTGACGGATGCCCCAATGCTGaccatgttttcaaaaa
agaaactgCAGCTGACAGTGGAAAGAAATTCCGATTTTCATTGAACGTAT
TCCGATTCAAAAACTCAAACGGCATGGTCTACATTCATTGCTCCGCTCAC
GTCTGTTTGAAAAACAGCAACGAAACAAACTGTCAATTTGGTTGTGAGCA
AAATAGCAGACGGCGAAGACGTTCAGTGGAGGATAATGCTTTGACAACAC
TTGATCATAATCTTTCCAAAGATTATGACATCCGAACTGGATTAATTATT
GTCACTGAAAACTCTAAAGCTAATGATCAAGCTGGGACAGACAACCAAGC
ATCATCCAACGACGGCCAATTCTTTCAAACCACGACCAATATCATTCTCA
TTGCAATCACCCTGGTTGTGTTGACTTTCGTTTGTGTTCTCTTGGTTTTT
GTTGGTTTGCGTCGTCATCGAAATGGTTCAAGAAAGAATGGTACTAAAAT
GGAGATGAATTGAATCGAGGTGAAAATGAACATTGTCCCGAGCAAATGTG
GGTTGTTCTGATAAACCTTTACAATCAGAACAGAGATTGGACACTACGAG
TGTAGTACTACACGGTGATGTTACGGTTCAGTTTAATTTGATCAATTTAG
TCTTTGTATATTCAAATAcctagaaaaatatttttaattgtaaatttaat
gataatgatgaaaaaaaatgattttatacTTGAATATACTAAAcacgaaa
ataattttcattaacaCTTTTTAAGTCGGTACTTTTCCATGCGCCT
Run BLAST on NCBI

protein sequence of TCONS_00071695-protein

>TCONS_00071695-protein ID=TCONS_00071695-protein|Name=TCONS_00071695-protein|organism=Clytia hemisphaerica|type=polypeptide|length=394bp
MNSSRNMKILWLSIICISYLSMVVQAKSNFSIECDTQKMTIYILKDTISI
PESDLSQYNISWYDSTCGPSGKSNETHLILEAGYSSCGTRAIDNGNDVTF
KNQVSVNLNATNAYKNNLLERIDTFATYSVECNVPQGVNVTHEYGANITK
ADLVEGVSSSTDQFTVSMNLHKDSNFNKSLQYPAVIDRLGRFNLELEIDT
VAELSIIPRNCHGTLTSSRDDGIREDLITDGCPNADHVFKKETAADSGKK
FRFSLNVFRFKNSNGMVYIHCSAHVCLKNSNETNCQFGCEQNSRRRRRSV
EDNALTTLDHNLSKDYDIRTGLIIVTENSKANDQAGTDNQASSNDGQFFQ
TTTNIILIAITLVVLTFVCVLLVFVGLRRHRNGSRKNGTKMEMN
Run BLAST on NCBI

transcript from alignment at scaffold_63:1178178..1183430+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071695 ID=TCONS_00071695|Name=TCONS_00071695|organism=Clytia hemisphaerica|type=transcript|length=5253bp|location=Sequence derived from alignment at scaffold_63:1178178..1183430+ (Clytia hemisphaerica)
AAAAGAAAGTCTCTTGGGACATCAAAATCGTAAAGATTCGACAGCAGCAA
AACTATAAATttaaaatgtacaaaatacGTTGTCACAAAAGCAGGTTTAC
AAGAGTCACAGTGAAAAGGCAGAAGCAGAGAGTCAATATCGTTGTCAGAA
GCAATACAAAACACAACAATTTCTACAAATGAACTCAAgcaggtacacgt
tttttataaaaacatccgaagTTTTTAATGCCTTTGGACGTTCTTGACAT
TTTAAGTTTCAAGCCTATAAtcttcttaacatgttcttattttgaccgtt
ttttgagtattttgtccattttcctaagaaattgggtgttttgagaGTCA
ataaagccttgaaatgttcttaactttttttaatgtttttgccGTGGAaa
tcttatgtttttatatggtttgtttttaataaaaaaaacgtgcaaggaca
aaatttttttcgttcttttccAAATCGCTGCATggtgaaaataaatcaaa
cgTTGACTTTTTAATAGACCTTTACGCCACACGAACATTTAATTTGAAGC
CTCGAAGGTGCTaaagaggaatcttcaacctgtctcaagcaaaaaaagca
agaaaaagtgaagactTAAGTTTGCCCcgtattttgaatttttgtttgaa
aaacacacgGGTCACGTGTtcaggatgggaaataagtggttgcAGGATGT
AGCTCTTTAGGGGCTTTGAAATTAATATTCAAGAGTAACGCTTACTTTTA
AgatattgctatggtaattgattcccacAGGAGTTCTTAATAATTGTATT
ATATTCATTAAAACATTAAAGTAAACactttcgattttcaaaattcactC
TTTGCTGCATAGTGCAAGTTTGCAATCTAACAAGGATATCCGCAAGGATT
ACTATTCAACATGAGATTATTATCAGtacaacaaaattatttttggttta
AATCACTTTTAGAAACATGAAGATTTTATGGTTGTCAATCATTTGTATCT
CGTATTTATCGATGGTCGTCCAAGCCAAATCAAGTGAGTCTTTGTTTTGT
GTTTGGAAAATTACGTGATTCGAAGAAGGAATGTTTTAAATGTAAATGTA
GAAATTAATCTTTCGTATCATGTATGGGATCGATGGATTTCTTTTTCTTC
CAGTCAACATACCTTTTTACGGTTAGCTgcttcgtataaaaagtcactaa
aatttcaagtaaacaaaccatctcattgactaaaagcaaaaacataaaga
AGATGTCCAGAGTAAAGAGCACAGAAAGCACATTTTCTCATACTTTGCAC
ATTTTTcatatgtttttgcttttagccaatggaatggtttgtttactcga
aattttggttACTTCTTAGACGAAACAGCTAACCGGAAAAATATGTATTC
AATTAACATTCCAGACCCGTtgcttttatgattttttacgaTAAATCAAT
TCGCTAATTGATGGTACTTACAACAGATACCTTTCCAACAATATAATATA
CAAATGCGAATGCAAATAATTCTGTCTGTTATAGCCACTTTGGAAGTAAA
GACTTGACCACTCTGGCACATAATTTTCACTTTCGTACAGATCTTTGAGG
CGGCCATTTTGGTCTGTCTcaatattttgagatattttgagCAGAAATGC
TTTTGCTGATCCAAATTTTGAGCAAACTTATGGAAAGTTAGCCGTAATTA
CATTTTCTTTTGAGGTTTTGAGCCAAATAGGAGTAAGAATTTTTAACTAA
CTCCTAACTAGTGCAATTATTTTCTTTCATCAATAGACTTCTCAATAGAA
TGTGATACCCAAAAGATGACTATTTACATTCTTAAAGATACAATTTCAAT
CCCTGAAAGTGATCTTTCTCAATACAATATTTCATGGTATGATTCTACTT
GTGGACCAAGTGGAAAGTCCAATGAAACGCATTTGATTTTGGAGGCTGGT
TATTCGTCTTGTGGGACTCGAGCTATCGACAATGGCAATGACGTGACTTT
TAAAAATCAGGTACCTCGCTTGTCTTCCAAAAAGATTTTAGTGTCTCTTT
TAGGTTAAAATGTTTACAATacacacaggttgcaaaatgaaagtctgaag
acaaatcacgcttttactcgaaatttttatgtgtttgttacatgacatta
tttctgattggttcgaatttattgatacACTagtaaagttatcagctgta
agttgtaaagcaattAAGATGGGAATAAAACCACGTGAAcattttcgagt
aatcacatgttttgagtgcattgatataattttgcagccCGTGTATTTGT
AATAATTCTTTTTGAAGCGCACTTACATTTAACGTAGAACCACTTTCTTA
GCCGATTTCACTGGACAGGAGTCACCTGCgaataattttttgcaaaaaaa
aacattttactgtATCATTTAAAGGATATAAATAAGTTCGATGCATAACA
AGGAACACTCCTTCCCAAGTGGGAGTATGTTAGATCAGTGCACAGGATAT
ACAGTGTCCTgaaaaaagcggacaaataTCTATACAAAGTATAATCCTCA
TAATTTATGTGAAATTTTATGAATTacatatttaatatttaatcccaaaa
acctattcaatcgTTTTGGAAAagaatatctattgattgagCCGAGAATT
TTGATCTTATTTTAATCATTCCATGTCCAGTAAGGATAAGTTCAGAATTT
TACTTAATGTTAAAAGATGCCAATTCTTTTGGGATGCACTGTGGTAAGTG
AACGTTCCTTTGATTTACTTTGAAACCCTTTTTTCAATATTCAGGTTTCG
GTCAATTTGAACGCTACAAACGCATATAAAAACAACTTATTGGAAAGGAT
TGATACCTTTGCCACATATTCTGTTGAATGCAATGTCCCACAAGGTGTGA
ATGTAACACATGAATATGGAGCCAATATCACCAAAGCTGATTTGGTCGAA
GGAGTATCAAGTGAGTAAAACCTATATCATGACGTAATGTGTTATACGGA
AGCAACTTAGATCTAGGCCCACCGTTTGTCACTAGTTTCAAAATTATTGG
TAAATAactgttttttttatgtttccTTAACACATTACGTCATGAAGGAT
TTGGGTAAACCAATGCGGCTTATTGGAAATCAACcttagatatttttatt
gaaGTATAACTTTTATTTATCAATTTTACTAGGTTCGACCGACCAATTCA
CTGTCTCAATGAATCTACATAAAGACTCAAACTTCAATAAAAGTCTTCAA
TATCCTGCAGTTATTGATAGATTGGGACGTTTCAATTTGGAACTTGAAAT
TGACACTGTTGCTGAACTGTCAATTATTCCACGAAACTGTCATGGTACTT
TAACTTCAAGCCGAGACGATGGTATTCGGGAAGATCTTATCACTGACGGG
TAATTCAACTTTTTTACGtttagagcatttttatttttctttccctAAAG
TTAGATTCTGTTTTCGTACATTTGTTTTCTTCCTGAGAGAAGGTGGGCTA
CTTGATACAGAATTTACCTATCAAGtttttgattgtatttttcttaaaag
ttgTTATAGGAAATTCCCGGGAATGTTTGCCAGCTTCGACGTAAAAATGA
AGAAGTTGTGATCATTTTAGATGGGAAAGTTTTTGCAATTAGAACCCTTA
TAAAGTCCCGTGTATTTTGTACCGCTCAGAGTTCTTTGAAGTAAACGTCT
ACTGAGTAGCCCCTAGATGAATATTTTGTTGCTTTGACAGATGCCCCAAT
GCTGaccatgttttcaaaaaagaaactgCAGCTGACAGTGGAAAGAAATT
CCGATTTTCATTGAACGTATTCCGATTCAAAAACTCAAACGGCATGGTCT
ACATTCATTGCTCCGCTCACGTCTGTTTGAAAAACAGCAACGAAACAAAC
TGTCAATTTGGTTGTGAGCAAAATAGCAGACGGCGAAGACGTTCAGTGGA
GGATAATGCTTTGACAACACTTGATCATAATCTTTCCAAAGATTATGACA
TCCGAACTGGATTAATTATTGTCACTGAAAACTCTAAAGGTTAGTTAGGA
TATATTTTACGTGTTAATGCTTCATCGTTACCTCATTTCAACCTTaggag
actgttcatctaacgctttcagaccatctaaaaagaatAACAAATAACTA
Ttgaaaagcgacaaaaagaacgacaaaccctaactatcaaagaacgacat
attttgcCGTCCCAAACCCCAACTTTAGTCGGTGACTACCACCCCTAaat
attcattactttttgcacTTTAGGCCCTCTATCGGAAAATGTTTGAGttt
aatttttaatgtttttaaaagctCTGAAATACGGTGGTCATTCAGAATTA
CTGTGCCTAGGGTATTTTTCGCATCGGGGACTATTTTCATGCAAGTTTTC
CAACGAGGAGGGTTCGTTCTGTGTCAGTGAAACAGGGATGTATAAGTAGA
GCACACATTTTTAACTCTCTTGTTAGTAAACTTTTTTATCACTTCAAATA
CGAGGCCAGTGTTCTTGACTTTAAGAATTATTGGATCAGGTTGACATTAC
AGGGCCCATGGACGCAAAGCGTATCAGTCATTCTCACTGATAGGCTAAGC
CTTGTCAACCTGATACGAATTACTTTAACTATGTGAAAATAGTAGATACG
ACTGTGCAAAATATTGGATATTCTATAAAGAATACTTGCTCTAGCGTTTT
AGCATAATACCAGACGAATAATGTCTACCCGTTTAAAACCTTgagtgtaa
aattttaaaatattttctgctCTTAGCTAATGATCAAGCTGGGACAGACA
ACCAAGCATCATCCAACGACGGCCAATTCTTTCAAACCACGACCAATATC
ATTCTCATTGCAATCACCCTGGTTGTGTTGACTTTCGTTTGTGTTCTCTT
GGTTTTTGTTGGTTTGCGTCGTCATCGAAATGGTTCAAGAAAGAATGGTA
CTAAAATGGAGATGAATTGAATCGAGGTGAAAATGAACATTGTCCCGAGC
AAATGTGGGTTGTTCTGATAAACCTTTACAATCAGAACAGAGATTGGACA
CTACGAGTGTAGTACTACACGGTGATGTTACGGTTCAGTTTAATTTGATC
AATTTAGTCTTTGTATATTCAAATAcctagaaaaatatttttaattgtaa
atttaatgataatgatgaaaaaaaatgattttatacTTGAATATACTAAA
cacgaaaataattttcattaacaCTTTTTAAGTCGGTACTTTTCCATGCG
CCT

Coding sequence (CDS) from alignment at scaffold_63:1178178..1183430+

>TCONS_00071695 ID=TCONS_00071695|Name=TCONS_00071695|organism=Clytia hemisphaerica|type=CDS|length=1185bp|location=Sequence derived from alignment at scaffold_63:1178178..1183430+ (Clytia hemisphaerica)
ATGAACTCAAgcagAAACATGAAGATTTTATGGTTGTCAATCATTTGTAT
CTCGTATTTATCGATGGTCGTCCAAGCCAAATCAAACTTCTCAATAGAAT
GTGATACCCAAAAGATGACTATTTACATTCTTAAAGATACAATTTCAATC
CCTGAAAGTGATCTTTCTCAATACAATATTTCATGGTATGATTCTACTTG
TGGACCAAGTGGAAAGTCCAATGAAACGCATTTGATTTTGGAGGCTGGTT
ATTCGTCTTGTGGGACTCGAGCTATCGACAATGGCAATGACGTGACTTTT
AAAAATCAGGTTTCGGTCAATTTGAACGCTACAAACGCATATAAAAACAA
CTTATTGGAAAGGATTGATACCTTTGCCACATATTCTGTTGAATGCAATG
TCCCACAAGGTGTGAATGTAACACATGAATATGGAGCCAATATCACCAAA
GCTGATTTGGTCGAAGGAGTATCAAGTTCGACCGACCAATTCACTGTCTC
AATGAATCTACATAAAGACTCAAACTTCAATAAAAGTCTTCAATATCCTG
CAGTTATTGATAGATTGGGACGTTTCAATTTGGAACTTGAAATTGACACT
GTTGCTGAACTGTCAATTATTCCACGAAACTGTCATGGTACTTTAACTTC
AAGCCGAGACGATGGTATTCGGGAAGATCTTATCACTGACGGATGCCCCA
ATGCTGaccatgttttcaaaaaagaaactgCAGCTGACAGTGGAAAGAAA
TTCCGATTTTCATTGAACGTATTCCGATTCAAAAACTCAAACGGCATGGT
CTACATTCATTGCTCCGCTCACGTCTGTTTGAAAAACAGCAACGAAACAA
ACTGTCAATTTGGTTGTGAGCAAAATAGCAGACGGCGAAGACGTTCAGTG
GAGGATAATGCTTTGACAACACTTGATCATAATCTTTCCAAAGATTATGA
CATCCGAACTGGATTAATTATTGTCACTGAAAACTCTAAAGCTAATGATC
AAGCTGGGACAGACAACCAAGCATCATCCAACGACGGCCAATTCTTTCAA
ACCACGACCAATATCATTCTCATTGCAATCACCCTGGTTGTGTTGACTTT
CGTTTGTGTTCTCTTGGTTTTTGTTGGTTTGCGTCGTCATCGAAATGGTT
CAAGAAAGAATGGTACTAAAATGGAGATGAATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044536XLOC_044536Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071695-proteinTCONS_00071695-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071695-exon-scaffold_63-1491911889:1178178..1178369TCONS_00071695-exon-scaffold_63-1491911889:1178178..1178369Clytia hemisphaericaexon
TCONS_00071695-exon-scaffold_63-1510915933:1178178..1178369TCONS_00071695-exon-scaffold_63-1510915933:1178178..1178369Clytia hemisphaericaexon
TCONS_00071695-exon-scaffold_63-1575043694:1178178..1178369TCONS_00071695-exon-scaffold_63-1575043694:1178178..1178369Clytia hemisphaericaexon
TCONS_00071695-exon-scaffold_63-1491911889:1179140..1179210TCONS_00071695-exon-scaffold_63-1491911889:1179140..1179210Clytia hemisphaericaexon
TCONS_00071695-exon-scaffold_63-1510915933:1179140..1179210TCONS_00071695-exon-scaffold_63-1510915933:1179140..1179210Clytia hemisphaericaexon
TCONS_00071695-exon-scaffold_63-1575043694:1179140..1179210TCONS_00071695-exon-scaffold_63-1575043694:1179140..1179210Clytia hemisphaericaexon
TCONS_00071695-exon-scaffold_63-1491911889:1179964..1180187TCONS_00071695-exon-scaffold_63-1491911889:1179964..1180187Clytia hemisphaericaexon
TCONS_00071695-exon-scaffold_63-1510915933:1179964..1180187TCONS_00071695-exon-scaffold_63-1510915933:1179964..1180187Clytia hemisphaericaexon
TCONS_00071695-exon-scaffold_63-1575043694:1179964..1180187TCONS_00071695-exon-scaffold_63-1575043694:1179964..1180187Clytia hemisphaericaexon
TCONS_00071695-exon-scaffold_63-1491911889:1180972..1181137TCONS_00071695-exon-scaffold_63-1491911889:1180972..1181137Clytia hemisphaericaexon
TCONS_00071695-exon-scaffold_63-1510915933:1180972..1181137TCONS_00071695-exon-scaffold_63-1510915933:1180972..1181137Clytia hemisphaericaexon
TCONS_00071695-exon-scaffold_63-1575043694:1180972..1181137TCONS_00071695-exon-scaffold_63-1575043694:1180972..1181137Clytia hemisphaericaexon
TCONS_00071695-exon-scaffold_63-1491911889:1181360..1181576TCONS_00071695-exon-scaffold_63-1491911889:1181360..1181576Clytia hemisphaericaexon
TCONS_00071695-exon-scaffold_63-1510915933:1181360..1181576TCONS_00071695-exon-scaffold_63-1510915933:1181360..1181576Clytia hemisphaericaexon
TCONS_00071695-exon-scaffold_63-1575043694:1181360..1181576TCONS_00071695-exon-scaffold_63-1575043694:1181360..1181576Clytia hemisphaericaexon
TCONS_00071695-exon-scaffold_63-1491911889:1181918..1182216TCONS_00071695-exon-scaffold_63-1491911889:1181918..1182216Clytia hemisphaericaexon
TCONS_00071695-exon-scaffold_63-1510915933:1181918..1182216TCONS_00071695-exon-scaffold_63-1510915933:1181918..1182216Clytia hemisphaericaexon
TCONS_00071695-exon-scaffold_63-1575043694:1181918..1182216TCONS_00071695-exon-scaffold_63-1575043694:1181918..1182216Clytia hemisphaericaexon
TCONS_00071695-exon-scaffold_63-1491911889:1182954..1183430TCONS_00071695-exon-scaffold_63-1491911889:1182954..1183430Clytia hemisphaericaexon
TCONS_00071695-exon-scaffold_63-1510915933:1182954..1183430TCONS_00071695-exon-scaffold_63-1510915933:1182954..1183430Clytia hemisphaericaexon
TCONS_00071695-exon-scaffold_63-1575043694:1182954..1183430TCONS_00071695-exon-scaffold_63-1575043694:1182954..1183430Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_63supercontigscaffold_63:1178178..1183430 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1642.65	1626.51	1829.03	1768.09	0.457603	0.278794	0.25393	0.438422	0.230154	1.67586	0.050026	0.110064	0.197037	0.426301	0.0560764	0.481428	0.196969	0.208962	0.83983	0.951001	2.10182	1.51635	424.007	334.47	0.265072	0.260228	17.2132	24.1576	206.536	244.346
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001507ZP_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071695 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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