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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071709 ID=TCONS_00071709|Name=TCONS_00071709|organism=Clytia hemisphaerica|type=transcript|length=4462bpRun BLAST on NCBI protein sequence of TCONS_00071709-protein >TCONS_00071709-protein ID=TCONS_00071709-protein|Name=TCONS_00071709-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1040bp MSKNLGFIKLLFTFLLIRGIHGESCSVINKVTLNNYPSSKIGEQKWANGCRun BLAST on NCBI transcript from alignment at scaffold_63:224561..244036- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00071709 ID=TCONS_00071709|Name=TCONS_00071709|organism=Clytia hemisphaerica|type=transcript|length=19476bp|location=Sequence derived from alignment at scaffold_63:224561..244036- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_63:224561..244036- >TCONS_00071709 ID=TCONS_00071709|Name=TCONS_00071709|organism=Clytia hemisphaerica|type=CDS|length=3123bp|location=Sequence derived from alignment at scaffold_63:224561..244036- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00071709 vs. Swiss-Prot (Human)
Match: EPHA2 (Ephrin type-A receptor 2 OS=Homo sapiens GN=EPHA2 PE=1 SV=2) HSP 1 Score: 222.631 bits (566), Expect = 3.018e-59 Identity = 118/270 (43.70%), Postives = 172/270 (63.70%), Query Frame = 1
Query: 2824 KIIGQGAFGLVKLGDLYSTYGTSKVAVKMLKSRPGTQITQCDRVKFYQEAAIMSQFENDNVIALFGVLVGKRPCMVI-EHMARGNLWKYLNMIRRAREKENVTDISRKLHGLFLQMARDIASGMTYLASLDFVHRDLACRNILLDNKWRCKISDFGLSRHFLKDD--HYYTSKGGQIPVKWTAPEALNYKRYSTKSDVWSFGIVLWEIWSLGKRPYGNWDNDRVLKEVCENKYRLPSPEQTPILIYRLMLDCWCNDKNDRPNFSKILYCL 3624
K+IG G FG V G L ++ G +V V + + G T+ RV F EA IM QF + N+I L GV+ +P M+I E+M G L K+L REK+ + + + M R IA+GM YLA++++VHRDLA RNIL+++ CK+SDFGLSR L+DD YT+ GG+IP++WTAPEA++Y+++++ SDVWSFGIV+WE+ + G+RPY N V+K + + +RLP+P P IY+LM+ CW ++ RP F+ I+ L
Sbjct: 617 KVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAG--YTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMIITEYMENGALDKFL------REKDGEFSVLQ-----LVGMLRGIAAGMKYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSR-VLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHEVMKAI-NDGFRLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSIL 871 The following BLAST results are available for this feature:
BLAST of TCONS_00071709 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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