TCONS_00071873 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071873
Unique NameTCONS_00071873
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2223

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071873 ID=TCONS_00071873|Name=TCONS_00071873|organism=Clytia hemisphaerica|type=transcript|length=2223bp
AACCtgacagaaaatttcaaacgaCAGACAACGATTCAACACAAGGAAAA
CCAGTCGATCTCAAAACGTAGAGACAATCTGACAGAtttgaaaaaacatt
caaataacAAACAAGATGGTCATCAAACCAATTCTACTAAACGGCAAACA
ATCACACACCAGGAGAATCTCATCAAACGATCATTCATTATACACGATGA
AGACGAGGTGTTGAAAAGGTCATTGGTATCAACCATGTATGACTATTTAg
ccgaagatgaaaatgaagtgGCCGCAACCGATAATTGCCATGACGACGCA
CTCCAGAAACGTGTAGCTGAAATCATCAACGGTGGACcggaaaaattaaa
acaagccTGGATGAAACGTCTGCATTTCGTCAACGAGTCTGTATTAGACG
TTGGTAATTTCATCCCGTTAGTGTTATCTAGATGGTATTGTTCTGGTCAT
GGTTGTGGCCTGGACCAAGTTGCAGTCGAAGGGAAAGAGGaaGGTTCAGT
GAAGCTAGTAAGCAAGCGATTGGACGGACGATACGATTGGTTGACTTCGC
CGTATAGTATCAAACAAAAACGTGCGAAAATTGTGGACATAGGTGACGGA
TGTGACAACTCTACCAGTACTAAGTACACCAATACTGTTGTCTTGATCTC
CAATAATAACACTTGCACATATTTCCAAAAGCTGAAGAATGCACAGGAGA
AGGGGGCATTGTGTGCAGTCATTTATGCCAATAATGGAGAAACGTTATTC
GATATGACTTGTCAGAATGCTGAGTGTGAGGTGGAGATGAAGATCCCAGG
AACCATGATTCCTTATGAAGATGGAATCAAAATCAAAGACTTGATCAAAA
ATAACAAAGAGATCAATGTTCACTTTCAACACACACCCTGGTGGAATTTC
TTTTTCGGCATCGATGAACAAGGAAAACTACAAGAAGTTGGTTGGCTAGT
CTATCCATCCATGATTTTCCTCAGTTACCAGGCTAAATGGTTGAATTACG
TGACCAATCTTCTTCATGACATCAGTTCAATGAAGCAAAAATCTGATAAT
GAAGAGTTAACAATATTTCAAGGGAAGATTATGCAAGGAAACCACGGTGT
TGTGGCATGTCATGAAATCAAAGACAGTGTATTCAaagATTTATCAAAAT
TCGGGCACGTATATTTGGACATGGCTTTAGGATGTCCTGGTTCAACGGAT
TTCACTTGTCCGCATTGGGACCATACCGTACAATTATATTTGAATTGCGG
CGAGAGTCGTGTACAATGTaaagaaaataagaagaaaaaaaggaatcaCC
ATCAAGTTCGTTTGGGTCCTGAAATTGGACGTTGGATAACACCATTTAGA
AGACGTATTGGACGTTGGCTGACCGACATTCGACCACTTGCACCTTTATT
CACATCGAAATCGTGCACTTTTACCATGAAGACAGTGCCTTGGGCAATGC
CATGGAAACCATCCTTAAAACTATGGCTGACTGATAAAAAATCTGgaaAT
ATTGACCAACCGACTATGTTTGAAGAGCTGTTCAGAGGTGGGACGTTCAA
CGGCTCGTATAACTTAGATTCGCCGAAAGGGCGCCGTGAGAAAACCATTA
ACGTCCCTAAGAACGTGACCAAAGCTATGCTGTTTGCAACCATCACGGGC
CACGGAAGTGATGATAATAATTGTGCCGAATTTTGTGTGACATCACACCA
TTTCCAAATTAACGAAAACGATAATGAACGAGTGTTTGATAATGCCGGTA
CAGCAACGGGATGCGCGGACCGAGTTTCCGAAGGCTCGGAACCGAATGAA
CACGGAACGTGGCTTTACGGCCGGAATGGATGGTGTGACGGAGAGAACGT
CGGACCGTGGATCGAAGACGTTACAAAACAAATACGCCCTGGCGAAGAGA
ACACTATCAAATATAATGGATTTTTTAATAGTAAAGACCCAGCACCGAAA
AGGGATCCAGGAAATATTATTATGTACTCTTACTTGATTTTTTATACTAA
AAGTGGTGGTGGCCAGGCTAGTGATGACACAAAGAATAATCGTTGAACTT
TTTAAACCAAAATTATGATGAGAGATAACTTTGATCAGTATTTCATATCT
TATATCATGAGatcatttttataaaatttcgtATAGGATTATTTTTAGAT
TGTAGCTTTTATTGTAAATAGATTGAAATGCTATGAACTaggaattgaaa
gaaaaaataaaattaaaatgtcT
Run BLAST on NCBI

protein sequence of TCONS_00071873-protein

>TCONS_00071873-protein ID=TCONS_00071873-protein|Name=TCONS_00071873-protein|organism=Clytia hemisphaerica|type=polypeptide|length=681bp
NLTENFKRQTTIQHKENQSISKRRDNLTDLKKHSNNKQDGHQTNSTKRQT
ITHQENLIKRSFIIHDEDEVLKRSLVSTMYDYLAEDENEVAATDNCHDDA
LQKRVAEIINGGPEKLKQAWMKRLHFVNESVLDVGNFIPLVLSRWYCSGH
GCGLDQVAVEGKEEGSVKLVSKRLDGRYDWLTSPYSIKQKRAKIVDIGDG
CDNSTSTKYTNTVVLISNNNTCTYFQKLKNAQEKGALCAVIYANNGETLF
DMTCQNAECEVEMKIPGTMIPYEDGIKIKDLIKNNKEINVHFQHTPWWNF
FFGIDEQGKLQEVGWLVYPSMIFLSYQAKWLNYVTNLLHDISSMKQKSDN
EELTIFQGKIMQGNHGVVACHEIKDSVFKDLSKFGHVYLDMALGCPGSTD
FTCPHWDHTVQLYLNCGESRVQCKENKKKKRNHHQVRLGPEIGRWITPFR
RRIGRWLTDIRPLAPLFTSKSCTFTMKTVPWAMPWKPSLKLWLTDKKSGN
IDQPTMFEELFRGGTFNGSYNLDSPKGRREKTINVPKNVTKAMLFATITG
HGSDDNNCAEFCVTSHHFQINENDNERVFDNAGTATGCADRVSEGSEPNE
HGTWLYGRNGWCDGENVGPWIEDVTKQIRPGEENTIKYNGFFNSKDPAPK
RDPGNIIMYSYLIFYTKSGGGQASDDTKNNR
Run BLAST on NCBI

transcript from alignment at scaffold_64:75525..82911-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071873 ID=TCONS_00071873|Name=TCONS_00071873|organism=Clytia hemisphaerica|type=transcript|length=7387bp|location=Sequence derived from alignment at scaffold_64:75525..82911- (Clytia hemisphaerica)
AACCTGACAGAAAATTTCAAACGACAGACAACGATTCAACACAAGGAAAA
CCAGTCGATCTCAAAACGTAGAGACAATCTGACAGATTTGAAAAAACATT
CAAATAACAAACAAGATGGTCATCAAACCAATTCTACTAAACGGCAAACA
ATCACACACCAGGAGAATCTCATCAAACGATCATTCATTATACACGATGA
AGACGAGGTGTTGAAAAGGTCATTGGTATCAACCATGTATGACTATTTAG
CCGAAGATGAAAATGAAGTGGCCGCAACCGATAATTGCCATGACGACGCA
CTCCAGGTGAGTAAATTAGAATTCACCCGTGGAAAAAAAGGTTGATAATC
ACAATGTACGAACGCCCCTAAAGACCCTTACTATCGGTCATTTATTGTAA
CTCTCGGGATCAAACCCTGCCACTAACTGATGATAACTTAACCCCTGTCT
TCCAGGGTAAATCTTAGCGACCCATGAATAATGAATAAGTATTTGGTGAT
CCTATAGGTATATGAGTTACTACTTAGTTTACACAATAGGTTTACACAAT
CAGGCTTTTAGACCTTACTTTTGGAGAGTAGGAGTTTTACGCTCGAAACG
AAGATATGACGTAGCCTATATAAGAGTATCCTTTTCAACCTCACAGAAAC
GTGTAGCTGAAATCATCAACGGTGGACCGGAAAAATTAAAACAAGCCTGG
ATGAAACGTCTGCATTTCGTCAACGAGTCTGTATTAGACGTTGGTAATTT
CATCCCGTTAGTGTTATCTAGATGGTATTGTTCTGGTCATGGTTGTGGCC
TGGACCAAGTTGCAGTCGAAGGGAAAGAGGGTAGGTACTAAATCTTAAGT
TTTTACCCTTTTTGTTACGCACGTTTTTTGTTGTTTTTTTTAGTATAAGA
GCAATTTTATAAGAAACATGAGACTCCAAACAAAAGTTAAAATGTGTTAG
CCTATTTCATTACAAAAACCAGTTTTGATGGCAAGCAAGAAAGTTACCTT
GTTCGCATTTTATGAAATGAAGACTCTCGTCCCGAAGACTAAAATACACA
AGAAGAAAAAACATTTGATAGTCGCATTCTTTTTGTAATCCGAGTTAATT
TTTTTAATAGAAGGTTCAGTGAAGCTAGTAAGCAAGCGATTGGACGGACG
ATACGATTGGTTGACTTCGCCGTATAGTATCAAACAAAAACGTGCGAAAA
TTGTGGACATAGGTGACGGATGTGACAACTCTACCAGTACTAAGTACACC
AATACTGTTGTCTTGATCTCCAATAATAACACTTGCACATATTTCCAAAA
GGTAATCGACTAAGATATAAGTCAACTCCCTCTAATTCGAACCTCTCTAA
TTCGAACCTCTATAAATCGAATCTTTCTATAGTTCAAATTAAAATATTGG
TCCCCTTAACTGGTCAGTCGTTATAAAATATTTTACGTAATTCGAAATTC
TCTGTAATTTGAAGAACATTTTTGGTTCCATCAAGACCGGATTAGACAGA
GTCAACGTACTGCTAGTCTGAATCGCAGACCTCTATAGATATACTTCCTA
TATGTATATGAGAAACTCTTTTCGCTAGAGGATGAGCAGAAGCCTAACGT
ACTGTGGTAACATTTTCTGGTGTGGTCAAGTAGTTAGCGGTCTTTTTAAA
GAATTTCGCACCCCTCATTATATATTTTTTACACTGGCTCTGATTACTGT
GGGCGCGTTCACACTGGAAAGTTTACCTAATTAAATCTATCAAAGTTAAA
CAAAGAGATTTATGATGGATGAATACACTGGTTTATTACAGTTCTTTGTA
GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAA
TTGATTTTGCTTAAGGCTTCTCATTGGTTGATTTTTTATTGAGAGTTTCG
ATTTCACCTGTGATTGGTTGATATTGGTATCCATACATCACTTGAAATCC
GCAAGCATATTTGTTCTAATGATTTTACTCATTAATTGCATTAATCTTAC
ACATCAACAACACCGTTTGCACTATTTCTAATTTTTTTCTTAGTTCATTC
GTTTTTGAAATCGTAAAACTTTTTTTTCACTGCACGCATTCTTTGTTTAT
GCTTCCTTAATAAAATCTTTTGTTTTAAGGGTNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNACGCGTTCGACTCTTTGTTAAATGCACGTTCTGTATTGTAGTCAA
CAAAAGATTCTCCTAACTACATTTTTATTAAGGAAGGTCTGTAGTGTGAA
CACGACCTGTATCTTACTAAAAGGGTATAACATGTTAGTGGAGAAAGAAA
TGAAACGATAAATGTAATTAATTTACTTTTTGGAACCCAACAGAATCATC
AATTAAGTGGATGTGTTAAATTATGGTCACACTTTTTAAAACTTAAAGAC
CATTTAAAGTTTACAGCATTAGAACCTTAACAATTTATTTTAGCTGAAGA
ATGCACAGGAGAAGGGGGCATTGTGTGCAGTCATTTATGCCAATAATGGA
GAAACGTTATTCGATATGACTTGTCAGAATGCTGAGTGTGAGGTATAACA
TGCTTTATATACATCTGTTTACTACGCGTTTTTTATAAGAATAAACTATC
TAAGAACACAAGGCTTCGATGTCCAAAATGCTGTTAAGAACATTTTAAGC
TTTGCAGACTCTAAAACACCCGATTTCTTAGTAAAATAGACAAATATACT
CAAAAAATGGCGAAAATAAGAACATGTTAAAAGAACATTTTTAAGAACAT
CCAAAGGCTNAAAAGAACATTTTTAGGCTTAAATCTAAAAAAGTTAAGAA
CATCCATAGGCGTCAAAAATTTTGGATGTTCTTATAAGAAAACGTGTATT
ACAATTGGACCACTATCCATCTAACCATGGGTAAACGACAGGATGATACA
AATTCAGCCTCGACCTCGTCCCCGCGTATCCATGGCTTTATTTACGCTAC
GGATGGTCGTCAGAGAATAACTTACGTTGGCTTATGCGAGTTCAGTGCAC
AGAGAGGGGGAGGGGATACTTTTAAGTCATTAAAAACCTGACGATCTAGC
TTCTGGTATGAGAGGCTTCTGAGCACCATTTAGAAAGATCGAACTTTTTT
CCATATCGGGCTTACGCGCGTTTTCATACGTCAACGACATCCAAAAGTAA
TTTAAGTGAATCAGACTTAATTGATTAATTCTCGAATGTGGAATATTCAA
ATTGGCGGGGGTTCACTAAAGTTTCCAGAGAACCAATCATTTACTTTCTG
AAATCAGGTGGAGATGAAGATCCCAGGAACCATGATTCCTTATGAAGATG
GAATCAAAATCAAAGACTTGATCAAAAATAACAAAGAGATCAATGTTCAC
TTTCAACACACACCCTGGTGGAATTTCTTTTTCGGCATCGATGAACAAGG
AAAACTACAAGAAGTTGGTTGGCTAGTCTATCCATCCATGATTTTCCTCA
GTTACCAGGCTAAATGGTATGTATATGATTTCTTTCGATTAGTAAATTAA
ATGCCAGAACACTCAAAATCAAATCATAATACGACTTTACACAACAATTT
CGCCAAGATTCAGAAATGCTGTTCTAAAATCTGACTGATATGGAGACGGA
AGGAAGAAAGGCTTAAAATCTCGCCGGAAAGCCTCACTTTTGAATTTTTT
TTGCTTGACCATGAAGCTTTATCCAACTTCTACGAGTTAGACCAAAAATG
ACGATTTCTAACTCAAACTTGGCATTACAGGAGGATTTCGCCCTCCTATA
TAGCCTTGACATGGACAGGGAAAGGGTTAAATATACGCACCGGACTGTGT
CAAGGCATTTCAAACGGATATATAAACAGTGTTGAATGCATTGTGCTTTG
CTCCTTTATATTTTCTACAAAAAAAAACAGAATTCTCCCTCGAAATTTTG
ATATCACTTTGTTGCTTTTCCAGTTACTTTATTTTGAGTCTCTTCAACTC
ATAAAAACTAAGGAATGGTCACATGGCAGAACCCTTTTGTTGTATATACC
CCTAATAAAATAAAGTATAAACTTACAGATCAATGTTGTTCTCTTTCCCA
TCCATGGTTTGATCTTTGTTTACTTCCCATCCTGATTTGATCTTTTATTT
TTCACTCAGGTTGAATTACGTGACCAATCTTCTTCATGACATCAGTTCAA
TGAAGCAAAAATCTGATAATGAAGAGTTAACAATATTTCAAGGGAAGATT
ATGCAAGGAAACCACGGTGTTGTGGCATGTCATGAAATCAAAGACAGTGT
ATTCAAAGGTACATGTTTTTTTTAGACATTTAAAGACTTTGAAGCTTTTG
GATGTCTAACATACTAATTAGAAGAAAATTCTTGCTGCCTTGAAAATCAA
TTTAAGACAGTCAACTGTCAAATTTTATTTGCTTTTACAGATTTATCAAA
ATTCGGGCACGTATATTTGGACATGGCTTTAGGATGTCCTGGTTCAACGG
ATTTCACTTGTCCGCATTGGGACCATACCGTACAATTATATTTGAATTGC
GGCGAGAGTCGTGTACAATGTAAAGAAAATAAGAAGAAAAAAAGGAATCA
CCATCAAGTTCGTTTGGGTCCTGAAATTGGACGTTGGATAACACCATTTA
GAAGGTAAATAATTATTTCATTTTCCACGTAAAGTAAAATTACGCTTGAA
AAGGGGCTTTCTAAATGGGAAGCATTGGGTTTAAAGCCCAAAGAAGAGTA
GAATCTCTGACCTTTCCCAGGCAAAAAAAGTGAAACCAGATATTTTTCAT
CCAGAACGCGCCTAGAACGCGCTGTAATCATGACGACGGGTTGTATCTAG
TGGTTCCTTTGTTTTTGTGGACTTTTGTGGCGTTTTTTGAAATCTAGCGA
TAGATTTTACCTTCAGTCCGGTATTTGTGTAAAAGCTACGAGCAGGAGTT
CTGGATGGGAATAAGTAGCTTCATTTCCCATCCAGGAGTCTCGAGTCTAG
TCCTTCGCCCTTGGAAGTCAATGATGGGAAGGTAAGTTGACCAAGCTAGT
TGTTGAAAATAAATGAAATATCAAGCACCCTGCGCGTTATCTTTTTTGAG
CTATTTGATTGGTTGTTAGGATACCAATGAAGTAATTCGAGTTGTGAAAC
TTGAATTTCTAGTGACCAAAAATAAAAAAACACAGGTGTTATAATCGCTT
TGTAATATTGACAGAACCATTGCCATTCATATTTATCTGAAACCTGCTTA
GGCAGGTAGTCTTTTAAGTTGACATGGACAAGTATGTCAATATATTAAGG
GCTCTGGTCATAGTGAAAAATCAATGTCAGAATTTGAAGATAAAACCTTC
TATTTTCGCTTCTTTGGCATGTTTAAGAACAAACTGCTTTTGAAAGAATG
AATTTAAGTAATTACATCATGAGTAATTAAGAAATAAGTGTGGCATGGAC
TTTAATACAGGGTGTCCCTAATTAAAGTATCGAGTTTGAACATGCGATTG
AGTAGAAAAGTTTGTGTGTGTTATCGCTAAAATATAAGAACGTTCTCCAT
CACACAGGCTTATTACAAAAGGTAGTTACAACGTATAAATTAATCGTAAT
GACAAAAAAAAAGAGGGAGAGCTTAAAATACAATTTTTTCAAGTTAATGA
CAAATAATGTTTCTTTATTTAGATTTTTTCGGAAAAATTTTCTATTTGGC
TACATCCCAAGTTATAGCTGTTTTCGTATGAAAATTTAATGGAGAAAATT
GCCAAACATGAGGTCTTTTGGAGATTTTAAAGGAAATTTAATTCCACAAA
AATTTTCCGAAATTGTATTTTTAGATACTAAATAGATACATCACCTAAAC
CAAAAAAAATTCCAAAATGTTTGATTTTTACCGGGATAAGGGCTTTGAAA
GGTGAAATACTCTTCTTCGAAAAGCTCTTCGTTTTCTTCTTCATTTATTT
TTTTCATCTCAATTTTTCGATTTTTAATTTAAAATGCAGAAATTGCCATT
CATTCATCAGTTTTGTTTATCAATTTCAGACGTATTGGACGTTGGCTGAC
CGACATTCGACCACTTGCACCTTTATTCACATCGAAATCGTGCACTTTTA
CCATGAAGACAGTGCCTTGGGCAATGCCATGGAAACCATCCTTAAAACTA
TGGCTGACTGATAAAAAATCTGGTAACATGCTTATCTCATCTTATATATA
ACTCAGCGAAAGCTTTTTTACGGAGTAAGGCTCAAATGTCAAAAAATAAC
CTCAATCTAATTTTGTATTATTGATGTTATCGTTCGTTACAGGAAATGCA
AACGTGGGAAAATATATACGCGCATAATTTACAGTAAGAGATGATATAAA
GTTGGTATAAAGTCTCAAAACCATAATACTGAAATCTTAAGTCCTAGGAT
TTAAATTTTAAATCAATGATTAGTATTAATTATTCAGAGTATGTTTTTGT
ATTTTTTAGGAAATATTGACCAACCGACTATGTTTGAAGAGCTGTTCAGA
GGTGGGACGTTCAACGGCTCGTATAACTTAGATTCGCCGAAAGGGCGCCG
TGAGAAAACCATTAACGTCCCTAAGAACGTGACCAAAGCTATGCTGTTTG
CAACCATCACGGGCCACGGAAGTGATGATAATAATTGTGCCGAATTTTGT
GTGACATCACACCATTTCCAAATTAACGAAAACGATAATGAACGAGTGTT
TGATAATGCCGGTACAGCAACGGGATGCGCGGACCGAGTTTCCGAAGGCT
CGGAACCGAATGAACACGGAACGTGGCTTTACGGCCGGAATGGATGGTGT
GACGGAGAGAACGTCGGACCGTGGATCGAAGACGTTACAAAACAAATACG
CCCTGGCGAAGAGAACACTATCAAATATAATGGATTTTTTAATAGTAAAG
ACCCAGCACCGAAAAGGGATCCAGGAAATATTATTATGTACTCTTACTTG
ATTTTTTATACTAAAAGTGGTGGTGGCCAGGCTAGTGATGACACAAAGAA
TAATCGTTGAACTTTTTAAACCAAAATTATGATGAGAGATAACTTTGATC
AGTATTTCATATCTTATATCATGAGATCATTTTTATAAAATTTCGTATAG
GATTATTTTTAGATTGTAGCTTTTATTGTAAATAGATTGAAATGCTATGA
ACTAGGAATTGAAAGAAAAAATAAAATTAAAATGTCT

Coding sequence (CDS) from alignment at scaffold_64:75525..82911-

>TCONS_00071873 ID=TCONS_00071873|Name=TCONS_00071873|organism=Clytia hemisphaerica|type=CDS|length=2046bp|location=Sequence derived from alignment at scaffold_64:75525..82911- (Clytia hemisphaerica)
AACCTGACAGAAAATTTCAAACGACAGACAACGATTCAACACAAGGAAAA
CCAGTCGATCTCAAAACGTAGAGACAATCTGACAGATTTGAAAAAACATT
CAAATAACAAACAAGATGGTCATCAAACCAATTCTACTAAACGGCAAACA
ATCACACACCAGGAGAATCTCATCAAACGATCATTCATTATACACGATGA
AGACGAGGTGTTGAAAAGGTCATTGGTATCAACCATGTATGACTATTTAG
CCGAAGATGAAAATGAAGTGGCCGCAACCGATAATTGCCATGACGACGCA
CTCCAGAAACGTGTAGCTGAAATCATCAACGGTGGACCGGAAAAATTAAA
ACAAGCCTGGATGAAACGTCTGCATTTCGTCAACGAGTCTGTATTAGACG
TTGGTAATTTCATCCCGTTAGTGTTATCTAGATGGTATTGTTCTGGTCAT
GGTTGTGGCCTGGACCAAGTTGCAGTCGAAGGGAAAGAGGAAGGTTCAGT
GAAGCTAGTAAGCAAGCGATTGGACGGACGATACGATTGGTTGACTTCGC
CGTATAGTATCAAACAAAAACGTGCGAAAATTGTGGACATAGGTGACGGA
TGTGACAACTCTACCAGTACTAAGTACACCAATACTGTTGTCTTGATCTC
CAATAATAACACTTGCACATATTTCCAAAAGCTGAAGAATGCACAGGAGA
AGGGGGCATTGTGTGCAGTCATTTATGCCAATAATGGAGAAACGTTATTC
GATATGACTTGTCAGAATGCTGAGTGTGAGGTGGAGATGAAGATCCCAGG
AACCATGATTCCTTATGAAGATGGAATCAAAATCAAAGACTTGATCAAAA
ATAACAAAGAGATCAATGTTCACTTTCAACACACACCCTGGTGGAATTTC
TTTTTCGGCATCGATGAACAAGGAAAACTACAAGAAGTTGGTTGGCTAGT
CTATCCATCCATGATTTTCCTCAGTTACCAGGCTAAATGGTTGAATTACG
TGACCAATCTTCTTCATGACATCAGTTCAATGAAGCAAAAATCTGATAAT
GAAGAGTTAACAATATTTCAAGGGAAGATTATGCAAGGAAACCACGGTGT
TGTGGCATGTCATGAAATCAAAGACAGTGTATTCAAAGATTTATCAAAAT
TCGGGCACGTATATTTGGACATGGCTTTAGGATGTCCTGGTTCAACGGAT
TTCACTTGTCCGCATTGGGACCATACCGTACAATTATATTTGAATTGCGG
CGAGAGTCGTGTACAATGTAAAGAAAATAAGAAGAAAAAAAGGAATCACC
ATCAAGTTCGTTTGGGTCCTGAAATTGGACGTTGGATAACACCATTTAGA
AGACGTATTGGACGTTGGCTGACCGACATTCGACCACTTGCACCTTTATT
CACATCGAAATCGTGCACTTTTACCATGAAGACAGTGCCTTGGGCAATGC
CATGGAAACCATCCTTAAAACTATGGCTGACTGATAAAAAATCTGGAAAT
ATTGACCAACCGACTATGTTTGAAGAGCTGTTCAGAGGTGGGACGTTCAA
CGGCTCGTATAACTTAGATTCGCCGAAAGGGCGCCGTGAGAAAACCATTA
ACGTCCCTAAGAACGTGACCAAAGCTATGCTGTTTGCAACCATCACGGGC
CACGGAAGTGATGATAATAATTGTGCCGAATTTTGTGTGACATCACACCA
TTTCCAAATTAACGAAAACGATAATGAACGAGTGTTTGATAATGCCGGTA
CAGCAACGGGATGCGCGGACCGAGTTTCCGAAGGCTCGGAACCGAATGAA
CACGGAACGTGGCTTTACGGCCGGAATGGATGGTGTGACGGAGAGAACGT
CGGACCGTGGATCGAAGACGTTACAAAACAAATACGCCCTGGCGAAGAGA
ACACTATCAAATATAATGGATTTTTTAATAGTAAAGACCCAGCACCGAAA
AGGGATCCAGGAAATATTATTATGTACTCTTACTTGATTTTTTATACTAA
AAGTGGTGGTGGCCAGGCTAGTGATGACACAAAGAATAATCGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044616XLOC_044616Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071873-proteinTCONS_00071873-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071873-exon-scaffold_64-1575043694:82606..82911TCONS_00071873-exon-scaffold_64-1575043694:82606..82911Clytia hemisphaericaexon
TCONS_00071873-exon-scaffold_64-1575043694:82082..82265TCONS_00071873-exon-scaffold_64-1575043694:82082..82265Clytia hemisphaericaexon
TCONS_00071873-exon-scaffold_64-1575043694:81611..81801TCONS_00071873-exon-scaffold_64-1575043694:81611..81801Clytia hemisphaericaexon
TCONS_00071873-exon-scaffold_64-1575043694:80120..80218TCONS_00071873-exon-scaffold_64-1575043694:80120..80218Clytia hemisphaericaexon
TCONS_00071873-exon-scaffold_64-1575043694:79196..79404TCONS_00071873-exon-scaffold_64-1575043694:79196..79404Clytia hemisphaericaexon
TCONS_00071873-exon-scaffold_64-1575043694:78404..78552TCONS_00071873-exon-scaffold_64-1575043694:78404..78552Clytia hemisphaericaexon
TCONS_00071873-exon-scaffold_64-1575043694:78058..78271TCONS_00071873-exon-scaffold_64-1575043694:78058..78271Clytia hemisphaericaexon
TCONS_00071873-exon-scaffold_64-1575043694:76540..76682TCONS_00071873-exon-scaffold_64-1575043694:76540..76682Clytia hemisphaericaexon
TCONS_00071873-exon-scaffold_64-1575043694:75525..76252TCONS_00071873-exon-scaffold_64-1575043694:75525..76252Clytia hemisphaericaexon
TCONS_00071873-exon-scaffold_64-1510915933:82606..82911TCONS_00071873-exon-scaffold_64-1510915933:82606..82911Clytia hemisphaericaexon
TCONS_00071873-exon-scaffold_64-1510915933:82082..82265TCONS_00071873-exon-scaffold_64-1510915933:82082..82265Clytia hemisphaericaexon
TCONS_00071873-exon-scaffold_64-1510915933:81611..81801TCONS_00071873-exon-scaffold_64-1510915933:81611..81801Clytia hemisphaericaexon
TCONS_00071873-exon-scaffold_64-1510915933:80120..80218TCONS_00071873-exon-scaffold_64-1510915933:80120..80218Clytia hemisphaericaexon
TCONS_00071873-exon-scaffold_64-1510915933:79196..79404TCONS_00071873-exon-scaffold_64-1510915933:79196..79404Clytia hemisphaericaexon
TCONS_00071873-exon-scaffold_64-1510915933:78404..78552TCONS_00071873-exon-scaffold_64-1510915933:78404..78552Clytia hemisphaericaexon
TCONS_00071873-exon-scaffold_64-1510915933:78058..78271TCONS_00071873-exon-scaffold_64-1510915933:78058..78271Clytia hemisphaericaexon
TCONS_00071873-exon-scaffold_64-1510915933:76540..76682TCONS_00071873-exon-scaffold_64-1510915933:76540..76682Clytia hemisphaericaexon
TCONS_00071873-exon-scaffold_64-1510915933:75525..76252TCONS_00071873-exon-scaffold_64-1510915933:75525..76252Clytia hemisphaericaexon
TCONS_00071873-exon-scaffold_64-1491911889:82606..82911TCONS_00071873-exon-scaffold_64-1491911889:82606..82911Clytia hemisphaericaexon
TCONS_00071873-exon-scaffold_64-1491911889:82082..82265TCONS_00071873-exon-scaffold_64-1491911889:82082..82265Clytia hemisphaericaexon
TCONS_00071873-exon-scaffold_64-1491911889:81611..81801TCONS_00071873-exon-scaffold_64-1491911889:81611..81801Clytia hemisphaericaexon
TCONS_00071873-exon-scaffold_64-1491911889:80120..80218TCONS_00071873-exon-scaffold_64-1491911889:80120..80218Clytia hemisphaericaexon
TCONS_00071873-exon-scaffold_64-1491911889:79196..79404TCONS_00071873-exon-scaffold_64-1491911889:79196..79404Clytia hemisphaericaexon
TCONS_00071873-exon-scaffold_64-1491911889:78404..78552TCONS_00071873-exon-scaffold_64-1491911889:78404..78552Clytia hemisphaericaexon
TCONS_00071873-exon-scaffold_64-1491911889:78058..78271TCONS_00071873-exon-scaffold_64-1491911889:78058..78271Clytia hemisphaericaexon
TCONS_00071873-exon-scaffold_64-1491911889:76540..76682TCONS_00071873-exon-scaffold_64-1491911889:76540..76682Clytia hemisphaericaexon
TCONS_00071873-exon-scaffold_64-1491911889:75525..76252TCONS_00071873-exon-scaffold_64-1491911889:75525..76252Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_64supercontigscaffold_64:75525..82911 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0858897	0.219398	0.0780532	4.56107	4.12983	16.3063	17.3436	12.588	9.85546	10.5654	7.77823	11.575	9.36838	12.1933	18.9463	13.5149	13.1746	6.04841	5.03595	13.6594	12.9846	11.1491	12.0275	12.615	13.3516	3.91302	3.58318	8.05538	6.45417
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR015196PngaseF_N
IPR014784Cu2_ascorb_mOase-like_C
IPR015197PngaseF_C
IPR008977PHM/PNGase_F_dom
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0016715oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen
GO:0003824catalytic activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0003824 catalytic activity
molecular_function GO:0016715 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071873 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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