TCONS_00071884 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071884
Unique NameTCONS_00071884
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1365

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071884 ID=TCONS_00071884|Name=TCONS_00071884|organism=Clytia hemisphaerica|type=transcript|length=1365bp
ATTAGGAATGAAATCCTATAAATAATGAGAATGAGGCTTTTCATTACCTT
CAAACATTGGACACGTATTGTGAAAGGATAAACATTCACAGTTCACGCAG
GAAGGATNATTGGACACGTATTGGGAAAGGATAAACATTCACAGTTCACG
CAGGAAGGATGAAAACCgttatctttttttcatttttcgttgCTGTCATC
AGCGCAGAATGCGACGTCAGCAAATACAAGAAAATTGGTTGCTTTCAGAT
CGAGGATGAAGTTCGACCAGATTCTTTCCATGAAGTCATCGATTTGGATG
AAACTTTTGACATCGACAACTATGAGGAACAACTTCCAAAATTAGTATGC
GAATGCTTCAGCAAAACGAAAGATGATTACAAATACTTCTCAATTGGACA
TAACGGTCATTGCCATGGTGGCAAATCTTTCCATGCATCAAACCGTACCA
ACAATGAAGCAGGATGCATCGATGTTGGTCATCATAGTGCTGGAGATGAA
GAACACGAATATGTTTACCAAATCAAAGCTGATGCAGCAACACCAATTGA
TGGTGGAGTCAGTGATTTTGGTCCATGGTCACAATGTTCCAAATCATGTG
GTGGTGGTAGAAAATCACGTGAGCGCGCATGCGTAGATCCCATCCCAAAC
GACCCTGGAAAAGGTTGTGAAAATTTGACTCAAGTCGAAGAATGCAACAC
TCAAAACTGCCCAATTAACGGAGCCTGGGGAGGGTGGTCGGAATTCAGCC
AATGTAGCAAGTCTTGTGGAATGGGTTCACAATCACGAAGCCGTAAATGC
AATAGTCCAAAAGAACAATTTGGTGGGAAGAAATGCGTTGGCAAACACAC
AGAAACCCAAAGTTGCATGCCACAAATGTgtgtCAAGGGTAAATCTGATG
TTCGAATCTGTGAAGATAAAGCAGAAACTCTTTCTTGCCCTGCTAACTGG
TCAGTTCAAATCCAATCTGGTTCCTACTATGGTCGCAAAAACACATCTGT
ATGCAAACGATTCTACAACATCAATTGGTCAACTACATGCGAAGCTAACG
GTGGCAAAGACAAGATGGCTGAATTATGTGATGGCAAAAGGTCGTGTAGT
ATCGATTGCAACAATGATCGATTTGGTGATCCTTGTTGGGGAACTAAGAA
GTATTGTTTAGTCAAATACAAATGTGTTGGTTATgatttgtaaaaaatca
ttattttgacATACTGTTTTACTATTTGTATGAACTTTTATTTATGAGAA
GAAAATTTGAGATTGAATCtaactttcaaaatattattacacccctgtct
ctgtgccccAGTGGGTGTTGATTACCCAGTGGGGTGAGAAtcaaaaaacc
tgaaattaactGGGG
Run BLAST on NCBI

protein sequence of TCONS_00071884-protein

>TCONS_00071884-protein ID=TCONS_00071884-protein|Name=TCONS_00071884-protein|organism=Clytia hemisphaerica|type=polypeptide|length=344bp
MKTVIFFSFFVAVISAECDVSKYKKIGCFQIEDEVRPDSFHEVIDLDETF
DIDNYEEQLPKLVCECFSKTKDDYKYFSIGHNGHCHGGKSFHASNRTNNE
AGCIDVGHHSAGDEEHEYVYQIKADAATPIDGGVSDFGPWSQCSKSCGGG
RKSRERACVDPIPNDPGKGCENLTQVEECNTQNCPINGAWGGWSEFSQCS
KSCGMGSQSRSRKCNSPKEQFGGKKCVGKHTETQSCMPQMCVKGKSDVRI
CEDKAETLSCPANWSVQIQSGSYYGRKNTSVCKRFYNINWSTTCEANGGK
DKMAELCDGKRSCSIDCNNDRFGDPCWGTKKYCLVKYKCVGYDL
Run BLAST on NCBI

transcript from alignment at scaffold_64:217467..222157-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071884 ID=TCONS_00071884|Name=TCONS_00071884|organism=Clytia hemisphaerica|type=transcript|length=4691bp|location=Sequence derived from alignment at scaffold_64:217467..222157- (Clytia hemisphaerica)
ATTAGGAATGAAATCCTATAAATAATGAGAATGAGGCTTTTCATTACCTT
CAAACATTGGACACGTATTGTGAAAGGATAAACATTCACAGTTCACGCAG
GAAGGATNATTGGACACGTATTGGGAAAGGATAAACATTCACAGTTCACG
CAGGAAGGATGAAAACCGTTATCTTTTTTTCATTTTTCGTTGCTGTCATC
AGCGCAGGTAAGCTTAAAAGTTCTTATTGCCTTATTCTGTTAGGTAATCC
CCCGGGGGGGGGGCACTGACCTTGACGGCCGACGGGGACGTACCGCTGGA
GTTTGAAAAGTGGACCCTGTCAGATATGAATGTTTGGTAAATTTGGGACC
CTGTCGGAAAAAAAATCGTAAACCAGTGCCTTTTTTGAAAAGTATGAACC
ATAATAAAGATGTTCCTCTGATCTATGCTTTTTTATAAGAACACGATGCT
AAATTACGGCAAAAACCTTAGACCAAATTAAGCCTATCCCGGCGAAAACC
CTAACTAACACTAACCCTAACATTTTAAGAACATATTAACCTGAAAAACA
CAAAATAAGAATTGGGTTCGGTTGAGCCTCATCCAAGATTTACTAGTACT
TATAAGAAATTGCGTATAGCAGTCAGGCCAGTATGACTCCGTTTTCGATA
CATGTCTAGAATTCAGCAAGGCAGAATTTTATTTTTCAGATAATCTCCCT
CTGTATGGAAAATTATCCTCCAATTGTTATCCCCACTGAAAATTTTAAAA
TAAACCAATCCCCACTACGAAATATTTTGCTATTTCCCCCCCCCCCCCCC
CTTTTTTTTTTGCTTAAAAAAAAAAAAATTAAAAAAAAAACCCCCCCCCA
AAAAAATTTTTTTTTTCCCCCCCCCCCCACTGAATTTTCTAACTTGAAAA
CAAAAGAATTGAAATCGAAATCCCCAGCCATAAAAAGTATGGGAATATCA
ATCCCCATCGAGTTTCATATTTGTATCCACACTGGCTGAAAAAATCCTAC
TGGGTCTGTGAGAAGGGGGTGTCTCTGTTAAATACATATGACATACTGAC
CTAGGTGGTCTTTCGTTACAGAATGCGACGTCAGCAAATACAAGAAAATT
GGTTGCTTTCAGATCGAGGATGAAGTTCGACCAGATTCTTTCCATGAAGT
CATCGATTTGGATGAAACTTTTGACATCGACAACTATGAGGAACAACTTC
CAAAGTAAGATATTTATTAGGCTAATATTTCTAATCCTCCTGGTAGTACA
GCCGGAGATTTGATTTAAGAATACTTCTAACGAGCGTGATGCAAACTTGC
CCAAAAGAAGGTGAGATATTGCACATTTTGAGTAAATATCTAGCTCCCTC
AGGTGTTCTTGTAGCCCGGGGCCACTTGCAGCTTTTTGATAGACTGGATG
GCGCTGATAAGTGGCCCAGTGTAATTTTGCAGGCTCCATTTTTTGGCTTT
GCTTGAGGTGGTAGCAAATCCATGCCACTAGACCTACAGCCAATTCGATT
GACTTCAAAATATGCCATTTTTGCCCTGATTGCCAATTATTTTGCATTCG
ATTGACAAAAATTTGGCAAATGTGGCAAAATTTGAGTGCCATAAATGTCT
CCATACAAAACACTGTTCCCACGAGACCTGTGTTCTTTTCGCTCCAATTT
TGCCAAAGATTTTGAAAAATAGAAGACCTTCCAATGCTAAAACAAAACCA
TGCCGATCGGCAATTTGGTTGGTTAAAAAATTCACCCGGGCGTATAAACA
CTTCGCGTTCTACAAACGCCAAAAGAAAACTGCTGACGAAGCACCACAAA
ACAGAAATCAAAATGGCGGCGTAGCGGTGTACAAATTTGCCATGAAACTA
TGATCTTTTGACATTGAAAATGTGGATTTGGTAAAGTTGGTGAGTATGGC
AAATTTTGAAGTCAATCAAATTGGCTGCTAGTCCCTTTTTGAAGAAAAAC
AAACAGAAAACTATCGTAGTTTCATAAACTTTGATGGGATTTTAGAAAAC
ATTTTATTGTTTTGATATTTTTATATAATTTTTGAAAACAAAAGTGAAAA
AATTCAAGATGGAGAAATTCTCCAGTCTACTTCACTGGACTCAGCGCCAT
CAAAATCGTCAGAAAGCAAAGTTCAGTCAGAAGTAAGCTCTATAGTCTAG
TGTTCCTGTAGACGAACTTTTTCAGTAGCGTGTCGTCTTATTTGTTCGTT
AGTATACCGTGTATAAGGCCTTCTACACAGTGGCAGAACAGTTCTTAGAA
AATTCTGGTCTAGACGAGGATCACTTTAATATCAATTCTCCATGTCTCCA
GATTAGTATGCGAATGCTTCAGCAAAACGAAAGATGATTACAAATACTTC
TCAATTGGACATAACGGTCATTGCCATGGTGGCAAATCTTTCCATGCATC
AAACCGTACCAACAATGAAGCAGGATGCATCGATGTTGGTCATCATAGTG
CTGGAGATGAAGAACACGAATATGTTTACCAAATCAAAGCTGATGCAGCA
ACACGTACGTTTCTTTTTAAGAGATTTTTAAGAGTCAAATATTATTCGGA
ATTATCGAGCAAATTATAATGGTTGCAAGTTTTCTTTTTGGGTGCTTTGT
TACTTTCAGTAGGTCATGAAGCCACAAAAGATCTGGGAATATGTATATTT
TTTGAGGAAGAAAAATCAGAAGAAAAAAAATTTATAAATGCCATACATTC
ACTCTTGTGAATATAATGAGCTATCCTATTAATGTTTAAGGGAGTTTGGG
TAATCTGATTTAAGTAAAAGTGAAAAAATAAGCTTACACTGGCACTTGGG
TACTTGTTTCCTTCCTTATGAATTTTCATCTAAATTTCAGCAATTGATGG
TGGAGTCAGTGATTTTGGTCCATGGTCACAATGTTCCAAATCATGTGGTG
GTGGTAGAAAATCACGTGAGCGCGCATGCGTAGATCCCATCCCAAACGAC
CCTGGAAAAGGTTGTGAAAATTTGACTCAAGTCGAAGAATGCAACACTCA
AAACTGCCCAAGTAAGTAAAATGAAGTCTTTTCAAGGTAATATGATAGAC
TTGATAAGAATATCAAAAGATTCAGAAATTTTAGCTGACCCGGTTGCAAG
ACTCTCAGAAGGTTTGTTAGTAACTAAATAGTATCATTGTTTTATTCTCT
GCTGACGTCAATCTCCTAAGTTTTATTCCTGAAAAAACCATCCCAGTTCA
ACAGAATGCCCTAAAATATCATTAAACTGAGACTTATGCTATACTAAACA
CAGGAAAAAAACTCCATAATTTTCAGTGATCTTTATAATTTGAAATCCTA
AAATAAAAACAGAGATACTCCGTCCCTCACCGTATTATTTTAGTCGCTTT
ACAGCCGTGTAAGAGCCTCTAGAGAAACTCAACGACCTACTGAGACAATG
GTTCATTAAAATTACGTAATAATAGACCTTTTCATAATTTGCGTCACGAA
CATAACTTGCCTCGTTTTGAAATTATTGCCAAGGTGATTAACTCCCAGCG
GATTTTATTAGAACTTCTTTCGATTTATAAAAAAATCATTTAATGTCTCA
AGGGACAAAATCACCATGATTTATGAAAAGGTCTATTCTTAATCTTAATT
TTAATCCATCCTTTTATAGTTAACGGAGCCTGGGGAGGGTGGTCGGAATT
CAGCCAATGTAGCAAGTCTTGTGGAATGGGTTCACAATCACGAAGCCGTA
AATGCAATAGTCCAAAAGAACAATTTGGTGGGAAGAAATGCGTTGGCAAA
CACACAGAAACCCAAAGTTGCATGCCACAAATGTGTACGTATCTTTTGGA
TTATTTAACAATTATCGTTCGGCAAACCCGAACCGAGTCCCCTAGTCCGC
TTTTTTACGATTCTTATATTACTCAAGAAAGATTTTATTGCATCCAATAT
AGACTGGAATCGTTTATAATGCGTGTAATTCAGTAGTATAGGCGCTATAT
GATAATAATTCTATTGTTACGGGATTTAGTTCGAATAAACTAAAATTGTT
CCCTCCATTACTTTTTGCTTTATTTCTACTATGTCTGAATTAGTCGTCTA
GCTTGCAGAACTACATCCAATAGAAATATTTAAAGATGGTGCAAGTGATA
CTGGGGATTAAAATCCCTGTAAAACTTAAATTATAGTTTCTAACACCTTG
CCTGAGTTTTTGACACAGAATCCATTGTATGGTAAAATTTCTTTTCTTTG
AAAAGGTGTCAAGGGTAAATCTGATGTTCGAATCTGTGAAGATAAAGCAG
AAACTCTTTCTTGCCCTGCTAACTGGTCAGTTCAAATCCAATCTGGTTCC
TACTATGGTCGCAAAAACACATCTGTATGCAAACGATTCTACAACATCAA
TTGGTCAACTACATGCGAAGCTAACGGTGGCAAAGACAAGATGGCTGAAT
TATGTGATGGCAAAAGGTCGTGTAGTATCGATTGCAACAATGATCGATTT
GGTGATCCTTGTTGGGGAACTAAGAAGTATTGTTTAGTCAAATACAAATG
TGTTGGTTATGATTTGTAAAAAATCATTATTTTGACATACTGTTTTACTA
TTTGTATGAACTTTTATTTATGAGAAGAAAATTTGAGATTGAATCTAACT
TTCAAAATATTATTACACCCCTGTCTCTGTGCCCCAGTGGGTGTTGATTA
CCCAGTGGGGTGAGAATCAAAAAACCTGAAATTAACTGGGG

Coding sequence (CDS) from alignment at scaffold_64:217467..222157-

>TCONS_00071884 ID=TCONS_00071884|Name=TCONS_00071884|organism=Clytia hemisphaerica|type=CDS|length=1035bp|location=Sequence derived from alignment at scaffold_64:217467..222157- (Clytia hemisphaerica)
ATGAAAACCGTTATCTTTTTTTCATTTTTCGTTGCTGTCATCAGCGCAGA
ATGCGACGTCAGCAAATACAAGAAAATTGGTTGCTTTCAGATCGAGGATG
AAGTTCGACCAGATTCTTTCCATGAAGTCATCGATTTGGATGAAACTTTT
GACATCGACAACTATGAGGAACAACTTCCAAAATTAGTATGCGAATGCTT
CAGCAAAACGAAAGATGATTACAAATACTTCTCAATTGGACATAACGGTC
ATTGCCATGGTGGCAAATCTTTCCATGCATCAAACCGTACCAACAATGAA
GCAGGATGCATCGATGTTGGTCATCATAGTGCTGGAGATGAAGAACACGA
ATATGTTTACCAAATCAAAGCTGATGCAGCAACACCAATTGATGGTGGAG
TCAGTGATTTTGGTCCATGGTCACAATGTTCCAAATCATGTGGTGGTGGT
AGAAAATCACGTGAGCGCGCATGCGTAGATCCCATCCCAAACGACCCTGG
AAAAGGTTGTGAAAATTTGACTCAAGTCGAAGAATGCAACACTCAAAACT
GCCCAATTAACGGAGCCTGGGGAGGGTGGTCGGAATTCAGCCAATGTAGC
AAGTCTTGTGGAATGGGTTCACAATCACGAAGCCGTAAATGCAATAGTCC
AAAAGAACAATTTGGTGGGAAGAAATGCGTTGGCAAACACACAGAAACCC
AAAGTTGCATGCCACAAATGTGTGTCAAGGGTAAATCTGATGTTCGAATC
TGTGAAGATAAAGCAGAAACTCTTTCTTGCCCTGCTAACTGGTCAGTTCA
AATCCAATCTGGTTCCTACTATGGTCGCAAAAACACATCTGTATGCAAAC
GATTCTACAACATCAATTGGTCAACTACATGCGAAGCTAACGGTGGCAAA
GACAAGATGGCTGAATTATGTGATGGCAAAAGGTCGTGTAGTATCGATTG
CAACAATGATCGATTTGGTGATCCTTGTTGGGGAACTAAGAAGTATTGTT
TAGTCAAATACAAATGTGTTGGTTATGATTTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044622XLOC_044622Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071884-proteinTCONS_00071884-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071884-exon-scaffold_64-1575043694:221951..222157TCONS_00071884-exon-scaffold_64-1575043694:221951..222157Clytia hemisphaericaexon
TCONS_00071884-exon-scaffold_64-1575043694:220954..221086TCONS_00071884-exon-scaffold_64-1575043694:220954..221086Clytia hemisphaericaexon
TCONS_00071884-exon-scaffold_64-1575043694:219654..219856TCONS_00071884-exon-scaffold_64-1575043694:219654..219856Clytia hemisphaericaexon
TCONS_00071884-exon-scaffold_64-1575043694:219147..219317TCONS_00071884-exon-scaffold_64-1575043694:219147..219317Clytia hemisphaericaexon
TCONS_00071884-exon-scaffold_64-1575043694:218374..218538TCONS_00071884-exon-scaffold_64-1575043694:218374..218538Clytia hemisphaericaexon
TCONS_00071884-exon-scaffold_64-1575043694:217467..217952TCONS_00071884-exon-scaffold_64-1575043694:217467..217952Clytia hemisphaericaexon
TCONS_00071884-exon-scaffold_64-1510915933:221951..222157TCONS_00071884-exon-scaffold_64-1510915933:221951..222157Clytia hemisphaericaexon
TCONS_00071884-exon-scaffold_64-1510915933:220954..221086TCONS_00071884-exon-scaffold_64-1510915933:220954..221086Clytia hemisphaericaexon
TCONS_00071884-exon-scaffold_64-1510915933:219654..219856TCONS_00071884-exon-scaffold_64-1510915933:219654..219856Clytia hemisphaericaexon
TCONS_00071884-exon-scaffold_64-1510915933:219147..219317TCONS_00071884-exon-scaffold_64-1510915933:219147..219317Clytia hemisphaericaexon
TCONS_00071884-exon-scaffold_64-1510915933:218374..218538TCONS_00071884-exon-scaffold_64-1510915933:218374..218538Clytia hemisphaericaexon
TCONS_00071884-exon-scaffold_64-1510915933:217467..217952TCONS_00071884-exon-scaffold_64-1510915933:217467..217952Clytia hemisphaericaexon
TCONS_00071884-exon-scaffold_64-1491911889:221951..222157TCONS_00071884-exon-scaffold_64-1491911889:221951..222157Clytia hemisphaericaexon
TCONS_00071884-exon-scaffold_64-1491911889:220954..221086TCONS_00071884-exon-scaffold_64-1491911889:220954..221086Clytia hemisphaericaexon
TCONS_00071884-exon-scaffold_64-1491911889:219654..219856TCONS_00071884-exon-scaffold_64-1491911889:219654..219856Clytia hemisphaericaexon
TCONS_00071884-exon-scaffold_64-1491911889:219147..219317TCONS_00071884-exon-scaffold_64-1491911889:219147..219317Clytia hemisphaericaexon
TCONS_00071884-exon-scaffold_64-1491911889:218374..218538TCONS_00071884-exon-scaffold_64-1491911889:218374..218538Clytia hemisphaericaexon
TCONS_00071884-exon-scaffold_64-1491911889:217467..217952TCONS_00071884-exon-scaffold_64-1491911889:217467..217952Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_64supercontigscaffold_64:217467..222157 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0920703	0.0299277	0.138996	0.0339964	0.206937	0.228934	0.315656	0.110817	0.465515	0.704752	0.932795	0.183955	232.114	233.803	0.261403	0.635857	1.61273	1.46408	766.735	779.289	12.789	12.2879	30.1567	30.7119	20.7589	29.6723	0.0841644	0.314379	1.1241	1.2494
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000884TSP1_rpt
IPR000922Lectin_gal-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0030246carbohydrate binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0030246 carbohydrate binding
Blast
[Close]
BLAST of TCONS_00071884 vs. Swiss-Prot (Human)
Match: TSP1 (Thrombospondin-1 OS=Homo sapiens GN=THBS1 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 6.421e-25
Identity = 57/112 (50.89%), Postives = 65/112 (58.04%), Query Frame = 3 
Query:  549 DGGVSDFGPWSQCSKSCGGGRKSRERACVDPIPNDPGKGCE-NLTQVEECNTQNCPINGAWGGWSEFSQCSKSCGMGSQSRSRKCNSPKEQFGGKKCVGKHTETQSCMPQMC 881
            DGG S + PWS CS +CG G  +R R C  P P   GK CE    + + C    CPING WG WS +  CS +CG G Q RSR CN+P  QFGGK CVG  TE Q C  Q C
Sbjct:  435 DGGWSHWSPWSSCSVTCGDGVITRIRLCNSPSPQMNGKPCEGEARETKACKKDACPINGGWGPWSPWDICSVTCGGGVQKRSRLCNNPTPQFGGKDCVGDVTENQICNKQDC 546
The following BLAST results are available for this feature:
BLAST of TCONS_00071884 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TSP16.421e-2550.89Thrombospondin-1 OS=Homo sapiens GN=THBS1 PE=1 SV=... [more]
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