TCONS_00071887 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071887
Unique NameTCONS_00071887
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length363

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071887 ID=TCONS_00071887|Name=TCONS_00071887|organism=Clytia hemisphaerica|type=transcript|length=363bp
TTCAGTGTCTTCTTCGAAGGTGAAGATTATTACACCAGAGTAGAGGATTT
CAATGAAGGCGATCGAGCTCTTTCCGTTATTACTGGCGAAAAGGTCGTTC
AAGTGAATCCTGAATGTCATGAAGTGACTTTGGCGAGTGGAGAAAGTATC
AAATATGGAAAGCTACTCATAGCAACAGgTGGAACTCCACGTGGGCTCAG
CGTTTTCGATACTCAAGGCGTCAAAGATAAATTAACTCTCTTCAGAAATA
TAGCAGACTTCCAGAGTTTGACATCAGCGGTGAGTGAAGCAGAGCATGTG
GCCGTTGTTGGTGGAGGTTTCTTAGGAAGTGAATTAGCATGTGCCCTCGC
CTCCCATGGTAGG
Run BLAST on NCBI

protein sequence of TCONS_00071887-protein

>TCONS_00071887-protein ID=TCONS_00071887-protein|Name=TCONS_00071887-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
FSVFFEGEDYYTRVEDFNEGDRALSVITGEKVVQVNPECHEVTLASGESI
KYGKLLIATGGTPRGLSVFDTQGVKDKLTLFRNIADFQSLTSAVSEAEHV
AVVGGGFLGSELACALASHGR
Run BLAST on NCBI

transcript from alignment at scaffold_64:329079..329915-

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071887 ID=TCONS_00071887|Name=TCONS_00071887|organism=Clytia hemisphaerica|type=transcript|length=837bp|location=Sequence derived from alignment at scaffold_64:329079..329915- (Clytia hemisphaerica)
TTCAGTGTCTTCTTCGAAGGTGAAGATTATTACACCAGAGTAGAGGATTT
CAATGAAGGCGATCGAGCTCTTTCCGTTATTACTGGCGAAAAGGTAAACA
TATCTCAGTTTGTAAACCCTTTTACCTTCCTTTTTCATCAAGTTGGCAGT
ACGCGTCTTGTCTACTTTCATTCACCGTAGGATAACAAATCACATTTTTT
AATATTATGATTCTTTTTTTAAGGTCGTTCAAGTGAATCCTGAATGTCAT
GAAGTGACTTTGGCGAGTGGAGAAAGTATCAAATATGGAAAGCTACTCAT
AGCAACAGGTTCCCAGCATATCATGTTTCTTTGTTTCAAGCTGTGTTCTG
TTAGCGAACTTTTTGAGGTTTAACTCTTTTCTTGGTCTCTTTGATTCAAA
TTTTTGTCTAAATATTTTGCATGTTATTTTTTTCTTCCAGGTGGAACTCC
ACGTGGGCTCAGCGTTTTCGATACTCAAGGCGTCAAAGATAAATTAACTC
TCTTCAGAAATGTAAGATCTTTCTTTTTGTCTTCGAAAATCATATTATTT
GCGATTTAAGCCAGTAAGGATTTGTTTGTTTATTTACTGAATTCTCTTGG
TTACCATACAANCATTTGCGATTTAAGCCAGTAAGGATTTGTTTGTCTGT
TTACTGAATTCTCTTGGTTACCATCAGCTGTCTTTCGAAGTTTCTCTTCC
ATCTACTTTCTCTTCCTTTACAGATAGCAGACTTCCAGAGTTTGACATCA
GCGGTGAGTGAAGCAGAGCATGTGGCCGTTGTTGGTGGAGGTTTCTTAGG
AAGTGAATTAGCATGTGCCCTCGCCTCCCATGGTAGG

Coding sequence (CDS) from alignment at scaffold_64:329079..329915-

>TCONS_00071887 ID=TCONS_00071887|Name=TCONS_00071887|organism=Clytia hemisphaerica|type=CDS|length=363bp|location=Sequence derived from alignment at scaffold_64:329079..329915- (Clytia hemisphaerica)
TTCAGTGTCTTCTTCGAAGGTGAAGATTATTACACCAGAGTAGAGGATTT
CAATGAAGGCGATCGAGCTCTTTCCGTTATTACTGGCGAAAAGGTCGTTC
AAGTGAATCCTGAATGTCATGAAGTGACTTTGGCGAGTGGAGAAAGTATC
AAATATGGAAAGCTACTCATAGCAACAGGTGGAACTCCACGTGGGCTCAG
CGTTTTCGATACTCAAGGCGTCAAAGATAAATTAACTCTCTTCAGAAATA
TAGCAGACTTCCAGAGTTTGACATCAGCGGTGAGTGAAGCAGAGCATGTG
GCCGTTGTTGGTGGAGGTTTCTTAGGAAGTGAATTAGCATGTGCCCTCGC
CTCCCATGGTAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044625XLOC_044625Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071887-proteinTCONS_00071887-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071887-exon-scaffold_64-1575043694:329823..329915TCONS_00071887-exon-scaffold_64-1575043694:329823..329915Clytia hemisphaericaexon
TCONS_00071887-exon-scaffold_64-1575043694:329608..329692TCONS_00071887-exon-scaffold_64-1575043694:329608..329692Clytia hemisphaericaexon
TCONS_00071887-exon-scaffold_64-1575043694:329405..329475TCONS_00071887-exon-scaffold_64-1575043694:329405..329475Clytia hemisphaericaexon
TCONS_00071887-exon-scaffold_64-1575043694:329079..329192TCONS_00071887-exon-scaffold_64-1575043694:329079..329192Clytia hemisphaericaexon
TCONS_00071887-exon-scaffold_64-1510915933:329823..329915TCONS_00071887-exon-scaffold_64-1510915933:329823..329915Clytia hemisphaericaexon
TCONS_00071887-exon-scaffold_64-1510915933:329608..329692TCONS_00071887-exon-scaffold_64-1510915933:329608..329692Clytia hemisphaericaexon
TCONS_00071887-exon-scaffold_64-1510915933:329405..329475TCONS_00071887-exon-scaffold_64-1510915933:329405..329475Clytia hemisphaericaexon
TCONS_00071887-exon-scaffold_64-1510915933:329079..329192TCONS_00071887-exon-scaffold_64-1510915933:329079..329192Clytia hemisphaericaexon
TCONS_00071887-exon-scaffold_64-1491911889:329823..329915TCONS_00071887-exon-scaffold_64-1491911889:329823..329915Clytia hemisphaericaexon
TCONS_00071887-exon-scaffold_64-1491911889:329608..329692TCONS_00071887-exon-scaffold_64-1491911889:329608..329692Clytia hemisphaericaexon
TCONS_00071887-exon-scaffold_64-1491911889:329405..329475TCONS_00071887-exon-scaffold_64-1491911889:329405..329475Clytia hemisphaericaexon
TCONS_00071887-exon-scaffold_64-1491911889:329079..329192TCONS_00071887-exon-scaffold_64-1491911889:329079..329192Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_64supercontigscaffold_64:329079..329915 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
184.42	176.305	160.481	161.554	52.4791	41.7677	52.4275	57.6247	38.2793	53.2712	45.7846	39.1246	20.9062	19.3824	42.2204	44.8769	117.364	104.751	10.3901	15.8419	20.3162	31.4361	69.9159	55.1997	22.1212	25.2031	46.9891	36.3479	51.3443	39.1918
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR023753FAD/NAD-binding_dom
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0016491 oxidoreductase activity
Blast
[Close]
BLAST of TCONS_00071887 vs. Swiss-Prot (Human)
Match: AIFM1 (Apoptosis-inducing factor 1, mitochondrial OS=Homo sapiens GN=AIFM1 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.457e-22
Identity = 56/123 (45.53%), Postives = 75/123 (60.98%), Query Frame = 1 
Query:    4 SVFFEGEDYYTRVEDFNEGDRA-LSVITGEKVVQVNPECHEVTLASGESIKYGKLLIATGGTPRGLSVFDTQG--VKDKLTLFRNIADFQSLTXXXXXXXXXXXXXXXFLGSELACALASHGR 363
            S++F+   +Y   +D    +   ++V+TG+KVVQ++   + V L  G  I Y K LIATGGTPR LS  D  G  VK + TLFR I DF+SL     E + + ++GGGFLGSELACAL    R
Sbjct:  202 SIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKAR 324
The following BLAST results are available for this feature:
BLAST of TCONS_00071887 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AIFM17.457e-2245.53Apoptosis-inducing factor 1, mitochondrial OS=Homo... [more]
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