TCONS_00072011 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072011
Unique NameTCONS_00072011
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length704

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072011 ID=TCONS_00072011|Name=TCONS_00072011|organism=Clytia hemisphaerica|type=transcript|length=704bp
GCATGTTGTAGAATTTCGGTGAATTCTAATGGTAGATCCAATCATCTGTT
GGTCGAAGAGCCAAGAGTTAAGGATTCTGGAATTGAGAATATGCTTAAGA
ACCTATTTTCTATTGAAACTGTGCCTGAAACTCGCATGTCTGATTATGAG
GTATTTTCACAAGATGATCTGCATTTCCTTGAAATAGTTGAGTCTGCAGA
GTTCATTGATGGTCATTATCATGTTCCACTACCATTTAGAAATAAGAATC
AGTCCTTCCCTGACAATTTTCCACAAGCTTTGAAAAGAATGGATtcgttg
aaaagaaaatttcaatcttCTGCGCAGTTTCACTCTGATTATGTTAGTTT
CATGAAGAATATCATCGAGAAAGGTTATGCTCAAGAGGTTACGTCATCGT
ATCCTGAGGGCCAGAATTGGTACATTCCACatcatggtgtataccaccct
acgaaaaataaaatcagaGTTGTTTTTGATTGTAGTTCGTCATACAAAGG
TTTCTGTATGAACAAAGAGCTTGTGCAAGGTCCTGATCTAGCTAACCATT
TGATTGGAGTTTTGATGAGATTTCGCCAGGAACATGTTGCTTTCACAGCT
GATATTGAATCCATgtttttccaaatcaaaattCCTGAAAGTCAACGTCg
gtttcatcaatttttgtgGTGGAGGGATGGTGACTATTCCAAGCCACCTG
TCAC
Run BLAST on NCBI

protein sequence of TCONS_00072011-protein

>TCONS_00072011-protein ID=TCONS_00072011-protein|Name=TCONS_00072011-protein|organism=Clytia hemisphaerica|type=polypeptide|length=234bp
ACCRISVNSNGRSNHLLVEEPRVKDSGIENMLKNLFSIETVPETRMSDYE
VFSQDDLHFLEIVESAEFIDGHYHVPLPFRNKNQSFPDNFPQALKRMDSL
KRKFQSSAQFHSDYVSFMKNIIEKGYAQEVTSSYPEGQNWYIPHHGVYHP
TKNKIRVVFDCSSSYKGFCMNKELVQGPDLANHLIGVLMRFRQEHVAFTA
DIESMFFQIKIPESQRRFHQFLWWRDGDYSKPPV
Run BLAST on NCBI

transcript from alignment at scaffold_68:109061..109879+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072011 ID=TCONS_00072011|Name=TCONS_00072011|organism=Clytia hemisphaerica|type=transcript|length=819bp|location=Sequence derived from alignment at scaffold_68:109061..109879+ (Clytia hemisphaerica)
GCATGTTGTAGAATTTCGGTGAATTCTAATGGTAGATCCAATCATCTGTT
GGTCGAAGAGCCAAGAGTTAAGGATTCTGGAATTGAGAATATGCTTAAGA
ACCTATTTTCTATTGAAACTGTGCCTGAAACTCGCATGTCTGATTATGAG
GTATTTTCACAAGATGATCTGCATTTCCTTGAAATAGTTGAGTCTGCAGA
GTTCATTGATGGTCATTATCATGTTCCGCTACCATTTAGAAATAAGAATC
AGTCCTTCCCTGACAATTTTCCACAAGCTTTGAAAAGAATGGATtcgttg
aaaagaaaatttcaatcttCTGCGCAGTTTCACNCATGTTCCACTACCAT
TTAGAAATAAGAATCAGTCCTTCCCTGACAATTTTCCACAAGCTTTGAAA
AGAATGGATtcgttgaaaagaaaatttcaatcttCTGCGCAGTTTCACTC
TGATTATGTTAGTTTCATGAAGAATATCATCGAGAAAGGTTATGCTCAAG
AGGTTACGTCATCGTATCCTGAGGGCCAGAATTGGTACATTCCACatcat
ggtgtataccaccctacgaaaaataaaatcagaGTTGTTTTTGATTGTAG
TTCGTCATACAAAGGTTTCTGTATGAACAAAGAGCTTGTGCAAGGTCCTG
ATCTAGCTAACCATTTGATTGGAGTTTTGATGAGATTTCGCCAGGAACAT
GTTGCTTTCACAGCTGATATTGAATCCATgtttttccaaatcaaaattCC
TGAAAGTCAACGTCggtttcatcaatttttgtgGTGGAGGGATGGTGACT
ATTCCAAGCCACCTGTCAC

Coding sequence (CDS) from alignment at scaffold_68:109061..109879+

>TCONS_00072011 ID=TCONS_00072011|Name=TCONS_00072011|organism=Clytia hemisphaerica|type=CDS|length=702bp|location=Sequence derived from alignment at scaffold_68:109061..109879+ (Clytia hemisphaerica)
GCATGTTGTAGAATTTCGGTGAATTCTAATGGTAGATCCAATCATCTGTT
GGTCGAAGAGCCAAGAGTTAAGGATTCTGGAATTGAGAATATGCTTAAGA
ACCTATTTTCTATTGAAACTGTGCCTGAAACTCGCATGTCTGATTATGAG
GTATTTTCACAAGATGATCTGCATTTCCTTGAAATAGTTGAGTCTGCAGA
GTTCATTGATGGTCATTATCATGTTCCACTACCATTTAGAAATAAGAATC
AGTCCTTCCCTGACAATTTTCCACAAGCTTTGAAAAGAATGGATtcgttg
aaaagaaaatttcaatcttCTGCGCAGTTTCACTCTGATTATGTTAGTTT
CATGAAGAATATCATCGAGAAAGGTTATGCTCAAGAGGTTACGTCATCGT
ATCCTGAGGGCCAGAATTGGTACATTCCACatcatggtgtataccaccct
acgaaaaataaaatcagaGTTGTTTTTGATTGTAGTTCGTCATACAAAGG
TTTCTGTATGAACAAAGAGCTTGTGCAAGGTCCTGATCTAGCTAACCATT
TGATTGGAGTTTTGATGAGATTTCGCCAGGAACATGTTGCTTTCACAGCT
GATATTGAATCCATgtttttccaaatcaaaattCCTGAAAGTCAACGTCg
gtttcatcaatttttgtgGTGGAGGGATGGTGACTATTCCAAGCCACCTG
TC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044711XLOC_044711Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072011-proteinTCONS_00072011-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072011-exon-scaffold_68-1491911889:109061..109280TCONS_00072011-exon-scaffold_68-1491911889:109061..109280Clytia hemisphaericaexon
TCONS_00072011-exon-scaffold_68-1510915933:109061..109280TCONS_00072011-exon-scaffold_68-1510915933:109061..109280Clytia hemisphaericaexon
TCONS_00072011-exon-scaffold_68-1575043694:109061..109280TCONS_00072011-exon-scaffold_68-1575043694:109061..109280Clytia hemisphaericaexon
TCONS_00072011-exon-scaffold_68-1491911889:109396..109879TCONS_00072011-exon-scaffold_68-1491911889:109396..109879Clytia hemisphaericaexon
TCONS_00072011-exon-scaffold_68-1510915933:109396..109879TCONS_00072011-exon-scaffold_68-1510915933:109396..109879Clytia hemisphaericaexon
TCONS_00072011-exon-scaffold_68-1575043694:109396..109879TCONS_00072011-exon-scaffold_68-1575043694:109396..109879Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_68supercontigscaffold_68:109061..109879 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.673688	0	0.492441	0.620302	0.307739	0.179197	0.252361	0.214996	0	0	0	0	0.0616837	0.19801	0.0705495	0.189246	0	0.0926058	0.0966032	0.107494	0	0.450236	0.806955	0.418329	0.177074	0.265776	0	0.194362	0.92025	0.377644
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072011 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top