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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072093 ID=TCONS_00072093|Name=TCONS_00072093|organism=Clytia hemisphaerica|type=transcript|length=1572bpRun BLAST on NCBI protein sequence of TCONS_00072093-protein >TCONS_00072093-protein ID=TCONS_00072093-protein|Name=TCONS_00072093-protein|organism=Clytia hemisphaerica|type=polypeptide|length=524bp VTEGVDALFFNVVILGMLQTPLGKVWHKNQQDYVIIEMTTTHTNSVSNFMRun BLAST on NCBI transcript from alignment at scaffold_71:40820..54253+ Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072093 ID=TCONS_00072093|Name=TCONS_00072093|organism=Clytia hemisphaerica|type=transcript|length=13434bp|location=Sequence derived from alignment at scaffold_71:40820..54253+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_71:40820..54253+ >TCONS_00072093 ID=TCONS_00072093|Name=TCONS_00072093|organism=Clytia hemisphaerica|type=CDS|length=1572bp|location=Sequence derived from alignment at scaffold_71:40820..54253+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00072093 vs. Swiss-Prot (Human)
Match: RN213 (E3 ubiquitin-protein ligase RNF213 OS=Homo sapiens GN=RNF213 PE=1 SV=3) HSP 1 Score: 341.658 bits (875), Expect = 3.587e-102 Identity = 212/554 (38.27%), Postives = 296/554 (53.43%), Query Frame = 1
Query: 1 VTEGVDALFFNVVILGMLQTPLGKVWHKNQQDYVIIEMTTTHTNSVS-------------NFMAMLPQTRCATPQETINFYKNDEVISPTKYCQLNLLSLEPFRRVHTYLEAYVAGEEILNQLAYFVASEEALTILQKVAMLEMFVRKCGVLNPTWMEIRNFVYFFNMQLMDSENCIYTSVE-CSEMFPGFKNFVLKFLLRMAKDFSTRSLGDDDTNK----------LESGGFLLELKTKWEQSHHPYLFFNKDGGTFTFFGL----NINQAGDLVHKRPNGSNEIVEPQLMNSKLH-GILSENMKFDIVNFASDYQKLPREKKLTILYRVLIGGSDFNFDPDPNYQLTVDNMKKMLAIFTRIKCSIPVILMGETGCGKTSLITFMCKILAKSKEASNLVLVKIHGGVTKQHIMQHV---QNAXXXXXXXXXXXTILFFDEANTTDAIGLIKEIIIDKSXXXXXXXXXXXXMVVIAACNPYRRHSQDMIERLESAGLGYHVGTDQTYEKIGQIPLRQLVYRVHPLPESMKPLVWDFGQLDDVTEELYTREIVN 1566
V G+ F ++IL L GK+W +N I+E+ T+ S +F+ + P+ C P+E I+ + L E F+R + YL + ++ L+ Y S E L+ F+ CGV+NP+W E+RNF F N QL D E ++ + + GFK FV+ F++ MA+DF+T SL D + E L+ +WE HPY+FFN D T TF G NIN + D + + + ++++ +M L+ G+L + + F++ D+ KLPR KKL L L G DPD Y+LT DNM K+LAI R +C IPVI+MGETGCGKT LI F+ + A + LVK+HGG T I V +N K TILFFDEANTT+AI IKE++ D + E++ + +IAACNPYR+HS++MI RLESAGLGY V ++T +++G IPLRQLVYRVH LP S+ PLVWDFGQL DV E+LY ++IV
Sbjct: 2062 VQTGIWVFLFKLLILQYLMDINGKMWLRNPCHLYIVEILERRTSVPSRSSSALRTRVPQFSFLDIFPKVTCRPPKEVIDMELSALRSDTEPGMDLWEFCSETFQRPYQYLRRFNQNQD-LDTFQYQEGSVEGTP----EECLQHFLFHCGVINPSWSELRNFARFLNYQLRDCEASLFCNPSFIGDTLRGFKKFVVTFMIFMARDFATPSLHTSDQSPGKHMVTMDGVREEDLAPFSLRKRWESEPHPYVFFNDDHTTMTFIGFHLQPNINGSVDAIS---HLTGKVIKRDVMTRDLYQGLLLQRVPFNV-----DFDKLPRHKKLERL--CLTLGIPQATDPDKTYELTTDNMLKILAIEMRFRCGIPVIIMGETGCGKTRLIKFLSDLRRGGTNADTIKLVKVHGGTTADMIYSRVREAENVAFANKDQHQLDTILFFDEANTTEAISCIKEVLCDH-MVDGQPLAEDSGLHIIAACNPYRKHSEEMICRLESAGLGYRVSMEETADRLGSIPLRQLVYRVHALPPSLIPLVWDFGQLSDVAEKLYIQQIVQ 2599 The following BLAST results are available for this feature:
BLAST of TCONS_00072093 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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