TCONS_00072191 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072191
Unique NameTCONS_00072191
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length786

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072191 ID=TCONS_00072191|Name=TCONS_00072191|organism=Clytia hemisphaerica|type=transcript|length=786bp
ctttctttttctatcaatttcagggAATTCGAGGTGAAGAGGGCCAACCA
GGCTTCCAAGGACAGAGAGGAAACCGAGGGCAACCTGGGCCACCAGGTCC
TCGAGGTGCTCCGCCAATTGAAAGTTTGATTCCAAGCAGCTCATGGAGAG
ATTATTACAAGGAGAATCCTAACCAGTTTTACcgaGCAGTTGCAGGGGAC
TATTTATCTTACCTCAGAGAAGAAGTCGATGATTTGCAATATCCACGTGG
TACACGCGATAATTCTGCATTGAATTGTCAAGAACTATTGGATAATCGAA
ATGATATTCAAAATGGTCATTATTGGATCGATCCAAATCGAGGTTGTGCT
TGGGATGCTTTTGAAACGAAATGTCTTTTCAAAGGAGATGCTGGCTACAC
TTGTATAAAGCCTCAACCCAAAAcgGTGCATCTCCGGAAATTTGGCATAA
CCAGACACCAGGAAATGGTCTTGTCCAAATTTGTGAAGgtcAAAGCATCA
GTACGCCGTCCGCAATTAAATTTCGTCCGATTGTTAGCATCAGACGGTTA
TCAAGATGTGACGTTAAGATGTTTCAGACCACTCTACAATATCAAGAACT
TCTCGTTTGTTGGTCACAATAAGATCGAGATAAATGGACGTGATAGAACA
CAAGTCAAGATTATCGCAAATTCCTGCAGGAGGGCAAACAAGAGACGACT
AGGGAGAATCACTTTCCGTATATTCACTGACGGTAATTTGAATTTGTTCC
CTATAAAAGATGTTCGGATCCGATACGAGGCTATTG
Run BLAST on NCBI

protein sequence of TCONS_00072191-protein

>TCONS_00072191-protein ID=TCONS_00072191-protein|Name=TCONS_00072191-protein|organism=Clytia hemisphaerica|type=polypeptide|length=261bp
FFFYQFQGIRGEEGQPGFQGQRGNRGQPGPPGPRGAPPIESLIPSSSWRD
YYKENPNQFYRAVAGDYLSYLREEVDDLQYPRGTRDNSALNCQELLDNRN
DIQNGHYWIDPNRGCAWDAFETKCLFKGDAGYTCIKPQPKTVHLRKFGIT
RHQEMVLSKFVKVKASVRRPQLNFVRLLASDGYQDVTLRCFRPLYNIKNF
SFVGHNKIEINGRDRTQVKIIANSCRRANKRRLGRITFRIFTDGNLNLFP
IKDVRIRYEAI
Run BLAST on NCBI

transcript from alignment at scaffold_71:780710..787785-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072191 ID=TCONS_00072191|Name=TCONS_00072191|organism=Clytia hemisphaerica|type=transcript|length=7076bp|location=Sequence derived from alignment at scaffold_71:780710..787785- (Clytia hemisphaerica)
CTTTCTTTTTCTATCAATTTCAGGGAATTCGAGGTGAAGAGGTAAAGGAA
TAATTCTATTAGTTGAAAACTGCCGAAACTCTTAATACAAAAAATATTTA
GAAATCATGTTTTAACCATTAATCTTGATCTCAAATTTATAATCACTTTG
TTTTTTCTTTCGTCAAAGGGGGTATGTATGGAATTTAATTGAAGATTCTA
CTCCTCTTTCTTTATTTCATATTCTTTTTTAACCTCTTTAGGGCCAACCA
GGCTTCCAAGGACAGAGAGGAAACCGAGGGCAACCTGGGCCACCAGGTCC
TCGAGGTGCTCCGCCAATTGAAAGTTTGATTGTAAGCACCGTTCTCTAAC
TATTTGACTGGATCGGGCTACCCGTTCATCGAGGAAGGGTGTCTAGATTT
AAGAGCTGACTAGTCCGCCATCTTGTTTTCAATTCTGGTTGTCAACAGCA
CGATTCGAATGTTTTCTAATTCGAACGTTCGAAAATCTAAAGTAAATTGG
AAAAAAAACATGTTAGACTAGTCGACTTCAAAACTGTACACACTTCCACG
GGAAATCTGTGAGCAGTTAGCCTAGCTAGTGAAAACACCCACGATTTTTC
GGGGTGGTACAGGCTAGTTAAAATTTTAGACGAACAATAGCGAGTTTATT
TATCTAACTCTTTCTAAGAAACGAGGAGCAACTGAAACAATTGACAATAA
CCTGCAAGATAGGGGAAGTCTAAAGGGCTTGCTTGCCGTTTTACTCAGTC
AGGATCCAAAACATTGATGATAATCAAAATACATAAAATCTCCATAACGC
TATTTTAGCATGCTAGACAACAAGCTGTAGTTTATACAAACTCATACTAT
CCCATTACAATGCTCGTATTATCGTATAACACCCGTATTACTGTATTAGA
CATAAAGGACTCCAGTTTACCATAACGTTTAAAAAGGTGTACTCTAAAAA
TCAAAGAAGTTCATTTTCCACGTGTCTGTGAAAAACCTTACAATTAACAA
TACCCTTTGCTAGTTTGTAAGTAAGTAAGTTTGCGACCGCGGTCGAGGGT
GACCCAAAGGCCTTTTCTCTAGCTGTTTACCCGAAGGTAGGGGAGGGCGC
CACTCCTTTTCCTGGGTTTCTATATTTACCCTTGATCCGTCTCTTAAGTT
GCTGAGCATAGATGTGACCCAGCTGGGGATCGAACCCACAACCTTGCGCT
CCGTAGCAGGATGCTCTACCTTCATGCTACGGCCGCTTTGCTAGCTTGAC
TAATGTTCACGTTTGAATGTTTTAGCCAAGCAGCTCATGGAGAGATTATT
ACAAGGAGAATCCTAACCAGTTTTACGTAAGTTTTTTATTTACCCCATAA
TGATTTTATGGCTGACTTCCACTTGGCTTGCAGATGTAGAAAACANTCCT
AACCAGTTCTACGTAAGTTTTTTATTTACCCCATAATGATTTTATGGCTG
ACTTCCACTTGGCTTGCAGATGTAGAAAACATTCTATTACATCTAATCTA
ATACAATACAACTTGCATAACTGTCTTAGACAAGCCCCGGGTCCCTTCTA
GGAGTGATCCCAATATGTTCTACCACACTTGTATATAGCATTCCTGAAAT
ATACTTTAGAATACATATAATAAGGTGGAAGGCTCACTCTGTGTCAATTT
CTTGTCTCCCGCCCACTAGCGTTTATCATCAGTCCTAAATCTTTTGATTT
TAGCGAGCAGTTGCAGGGGACTATTTATCTTACCTCAGAGAAGAAGTCGA
TGATTTGCAATATCCACGTGGTACACGCGATAATTCTGCATTGAATTGTC
AAGAACTATTGGATAATCGAAATGATATTCAAAATGGTGAGAAGTTATGC
CTAGTTTTATAACTACCAAGAGAAAAAATTTGGCGGGAAGAAACTTTTGC
GGATTCACTTAAAATCTGCTAAATTTATTCCTTTTTTTTTTTTCGACTGA
CCACGGAACTGGACGGTCATGCTCATGTAGCGTGTTGATTGCGAAGGGCG
ATTGCAATTTTTGGCTGATGTTTTGCTTTTTTGATTGAATTTACTGATTT
ATTTTGCTGTTTTAACTGGTTTAAAGTTGTTGTTTCATTATGAGTCAAGG
AAGAGTCCTCAGAAATTCCTCTGAAGCTGCCAAACAAGAGGAGATCCTGG
AACAAAAATTGCTCGAGTTTGGAAAGAAACTGGCAACAAAAGAGGACATT
AATGATATTAAAACTTTATTCACCAAGCTACACGAACGTCTTGACGCACA
AGAAAAAAGAATCACCTCTCTCGAAGAAGACAGTATGCATCACGAAGAAN
AATGGCCTCATTTTTTGGGAATTTGGCTTTTACATTGAGTCCTGATGTCT
AATCTCTCCCTTGAAATAAAATTAAAGCTTTTTCTAATGGCTTTTTCCAG
GTTTCTCCCTATTTCCTTCAGATATATACAGTAGACTCTCGCTTATTCGA
ACTACTATTATTCGAATCTTTCTATAATTCGAACTTATTCTCGGTCCAGG
TCAAGGATAAACCGTTTTAATATACTTTCGATCTCTCGCTAATTCGAACA
AATAATATTCCCTTTTCGAGTTCGAATTAGCAAGAGTCAACTGTGAAGGA
TGTCCTCGATGACAGTAGAATAGGGATTACGTTATTGTTACTCTTCTCGT
TTTAGGTCATTATTGGATCGATCCAAATCGAGGTTGTGCTTGGGATGCTT
TTGAAACGAAATGTCTTTTCAAAGGAGATGCTGGCTACACTTGTATAAAG
CCTCAACCCAAAACGGTATATATATTTTTAACTATCTTTTCTATCGAATC
TAATTTCTTGGTCGGTTTTTGGTTTTTGGTATCCTCGAGGCTCGACACAG
ATTGTCTAAAATTCCTCGAACTTTTATTTTGTAGACACTTCACTCTACAT
CCCTTCTCCTTCCATAGTATACCGATATAACCGAAAGAATCTATTTTCAT
TGTTTTCTTCATTTTTTAATTGATTTGTTTGACATTTGCAAACCAAAGAA
AGAATGTCACTTGTCCGACTTGTCTGACTTGTCAAAGAGCGCCTAGAATC
GATTATGAGACGGCGCATTTTAGAATAGCATTTTATTTGCTTAATTCATT
ACTTCAGTGGCTATCAAAATTCTTTATTAGGAAATCTTTGACACCCATCA
TTCAATCATCCAATTAATCATCTTAAAATTATTCGGTTAATTTCAATCAA
ACATTTTTTTTGATTTGTTTTTCTTGACATTGTTTTATAGGTGCATCTCC
GGAAATTTGGCATAACCAGACACCAGGAAATGGTCTTGTCCAAATTTGTG
AAGGTAAAGTGATAAACGCCCTTTTGTCGTGAATTACATGTCTTTTTCTT
GTAAGCAAGTCTTTGCTCCTGGTTGTCCTGGGCTCGGCATATGCTTACAA
TTCCCTTATAGTCTGGCAGAAATAAAAGTTGACCTGGAAAAAAATTCCGC
GTAAACTTTCTTGGTATCGTTGGAAGCGGAATTTTACGAGGTTTAACANT
TTTTCTCTATCTACTTTTTATAATGTATACATACTGTTTTTTCGTTTATA
TGTGTTTTTTAATATGGAGCTACTTTTGTAACGGGATGTTTGGTTTTGGA
TTTGTCGAACCGGTTGACTTGATATGGGAATAAGTCTACAGCAGTATAGA
GCGTGCGTTGGAAATTTTAACTCTNAAATTGGTGAAATAAAACACTTAGG
ACCCATTTTCGATATAAAATGCCTTGAAAAGTGCTACCCTTGCAATGGTA
GGTGTCTTTCAAAACACTCAAATATGTATACCCCTGTCTCAAAAATCTGG
GGGGGGGGATTTCCCAACCACAAGCAATTAAACAGTGTTATCCATGATAT
GAAATGGGTCAAGTGCAAGGCGAAAGCCCTTGGGCAAAACCAAAAGTTTT
CCCCAAGGGCCTCATCATGAGGCTCTGAGTATGATAATCTACATAAAATT
TCGCTTCCAACGGTACCAAGAAAGTCTACGCGGAATTTTTTTCTACGTTC
ACCCCTATTTTGTTGTATTTCGGCCAGACTATTATCAGTCCTTTAATTCT
TCAAACACATTTATCAGTATCTATATATGCTTTTAAAAGAAAAGAACATT
TACCTTTAAAGCCATGGCTAGGCATAGACTTCTGGGTAATATCTAGGATA
TCCGGGAAAGTAATTTTGCCTTACGTAATTGTCTGGAAGCCTTCACTCAA
AAACGACTCTTGTCCATATTTCTGATGAACATTATCCTTAGATTCTCGCT
CTTTGTCCTGATTTCATAAATTAAATTGATTTTGTGTACATTTTTCTATG
AAAGTGTTCTGGGGTCAAATAAATTTCAAAATCTTCTATTGAATATCTGA
GAGATATGCGNTTCTGGGGTCAAATAAATTTCAAATTCTTCTATCTTCTA
TTGAGAGATATGCGTTGATTGGCCAAACTACTTGGTATAGATGTTTAGCT
TTCAAATATACCCCTGTGTCACACGAGAACCCCGCCAAACTGGAAAATCT
GGCCAAAATTTCGTACCCAGTAGGGAAATACCCTTCAGCTCCACTTGGAA
ATTAACTTTCATTCCATCCCCATGTAAAAAATTCAATACAAAAAATTGCA
GTCCGAAACCATCCCCTGTGGATTTTTTAGCTTGGAACGATAGAATTTCT
ATCCCCATTGGGATTTTTATCCCAACTGCGGGAAAAGGTTCCACCGGAGC
TGTGATACAGGGGAGTTTGAGTGGGTTTTAGCGTTTTTTTACGATGGAGT
TATTCGTAATAACCTCATTTTCATTGTAACTTCCCGAAGGGGCAATCAAG
TTACAAACCTGTTGCTTCAACAATGAAATTTCTTGTCGCTGATGTTCAAT
TCTATACTACAAATATCATTTAAGTTTATCTGGAAAGAGACCCGGCAATT
ATTATTATCGTCCTTGTATGATCCTTTTTAGATTCCTTGGTTTTCTATCC
TCATTATTTTCTTCTCTGCTTTGCTATAAAAGCCATTTTACAGGTAGTTT
GTTGCACGAACGAACGCTCTCGCTTAACTCGACATTTGTTTTGATGCGAT
TTTAATGACTATTGTGGTTAGACCGTGGAGCCATATTAATATAATTTTTT
TAATGTGATACGTTATAAATATGTTGCGTAATTCAAATTGTCAATTTCAC
ATGATATTTCTTCAAGTCAAATGATTCATTACGCTAGGTTGCCAAGTTGA
TGATTTAAAATAGCTTCACATCTTTTCCGCTTACGCTTAAACCAGTTATT
ACCAAGGAACCTGGAGACTAGGTATGGAGAATATCGGCTATGTGCAGGCC
GGTTTAAATTGTACCAAAAAAGCAACTTAGAGCTTGAAGTGATTGAAGAA
AGAATGTTAATATTCCAATAGTTTTCCACCTTAAGAGAGAGTTTTAATTG
CTGTCCGTGGTTTTCATACTCCTTAGAGAGCACCCTAGTGAGTGAGAATT
CTGACCTTCGTAGACTATTTATACTTTTCTTGTTACTAAGCCCTTCGAGG
GACTGGGGAAGGAATAAACCCAGCACCTGTTTTTGCCAGGGATTTTTCCG
GACAAGGTTTCATAGAAATGCAATAAAATTCAGGCGTGGTTTTAAAATAG
AGAATAAATTCAGCTCAAGCCATTGTGTAATTCTAAAATATTCATATCAT
TATAATCAACATCTTATCAATATCAAATGATGCATTCTTTCGTCTGGGCC
CACGAAAGTAGGTGGAGCTTCGTGTGGGAAGGTTAAATTCTAAACTATTA
ACTGGAAATTATTCTAAATTATTTTAGAGACCACATAAGTCTCTTTTCTT
ACCGCTGTTAATACAGGATAGTACTCTTCTTATTTTGTTTTGCTAATATT
ATGGAAACCTTTTTTGGACCTACCTGGAGGTCCTATAGATTAACCATTGT
CCGTTCGTTCGTTAGTTCGTTCGTCCGTTCGTCTGTTACAAGCTTTTCTC
AAGATTGGCTTAGAAAGATGCAAAATGGAGATACCGATGATGTGATAGCA
TAGGATTGAAACCAAAAAGTGCGATTGCAGCGCGCTTATTTCTTATCGAC
TTAAGAGTGGCTTAAAATCATCATTTTCTTTACCGTTTTAGAAATCTGAG
GCTTAGAGTGTTCTCAATTTGTTCTTAGATTATGGTCTCGTGTTTTTATA
GAATTATTCTTATAAAAATCTATGACTTTTTTGTTTTCAGGTCAAAGCAT
CAGTACGCCGTCCGCAATTAAATTTCGTCCGATTGTTAGCATCAGACGGT
TATCAAGATGTGACGTTAAGATGTTTCAGACCACTCTACAATATCAAGAA
CTTCTCGTTTGTTGGTCACAATAAGATCGAGATAAATGGACGTGATAGAA
CACAAGTCAAGATTATCGCAAATTCCTGCAGGAGGGTAAGAGTTTTCTTC
TCACATATTAAATCTAGACTATACTCTATCTGATATAAGACAGTTAATAT
CCAATTAAAAACAATCATTTTTGTTAACTCCGACTTTTGAAAAATCGCTG
TAATCATTTTTAAGGGTAGGGTGTTTGTTTCTTCCGCTATTTTTGTTATC
GTTCTAGACTACTTTCGAACGTGTCGCATGCGGTTGCGTCCACTGACCTT
ATATATATCTCTGGACAAAACTATATCCGCCATCTTTGATCGAAGTTTTT
TTCAATTGGTACCCGTAAAGAAGCCATTGCAGTGTTAAAAAATTAACGTT
TAACGGCGCTACATCAGCAAAAGTTTTCGAGGGAAAGTAGATCTAGCGCT
CTCGATGCATTTACACCGCTATTGAGAAGTGCAACCATTAGGCCACCACT
TTTCAAAGAACTCCGATCAAAGATTTTGCTTGGCCGAGATTGAGAAGCTT
GGTCCAGGGTATATAAAGGCCAGCGGTTGCGTCCCGCGAAATATGTTACG
GATCCAAAGTGTTGGCTCCCTACTATTAGTCAACAAGAAACTAAAACTCT
CAAATCTTCCTTTTTCCCCATAGGCAAACAAGAGACGACTAGGGAGAATC
ACTTTCCGTATATTCACTGACGGTAATTTGAATTTGTTCCCTATAAAAGA
TGTTCGGATCCGATACGAGGCTATTG

Coding sequence (CDS) from alignment at scaffold_71:780710..787785-

>TCONS_00072191 ID=TCONS_00072191|Name=TCONS_00072191|organism=Clytia hemisphaerica|type=CDS|length=783bp|location=Sequence derived from alignment at scaffold_71:780710..787785- (Clytia hemisphaerica)
TTCTTTTTCTATCAATTTCAGGGAATTCGAGGTGAAGAGGGCCAACCAGG
CTTCCAAGGACAGAGAGGAAACCGAGGGCAACCTGGGCCACCAGGTCCTC
GAGGTGCTCCGCCAATTGAAAGTTTGATTCCAAGCAGCTCATGGAGAGAT
TATTACAAGGAGAATCCTAACCAGTTTTACCGAGCAGTTGCAGGGGACTA
TTTATCTTACCTCAGAGAAGAAGTCGATGATTTGCAATATCCACGTGGTA
CACGCGATAATTCTGCATTGAATTGTCAAGAACTATTGGATAATCGAAAT
GATATTCAAAATGGTCATTATTGGATCGATCCAAATCGAGGTTGTGCTTG
GGATGCTTTTGAAACGAAATGTCTTTTCAAAGGAGATGCTGGCTACACTT
GTATAAAGCCTCAACCCAAAACGGTGCATCTCCGGAAATTTGGCATAACC
AGACACCAGGAAATGGTCTTGTCCAAATTTGTGAAGGTCAAAGCATCAGT
ACGCCGTCCGCAATTAAATTTCGTCCGATTGTTAGCATCAGACGGTTATC
AAGATGTGACGTTAAGATGTTTCAGACCACTCTACAATATCAAGAACTTC
TCGTTTGTTGGTCACAATAAGATCGAGATAAATGGACGTGATAGAACACA
AGTCAAGATTATCGCAAATTCCTGCAGGAGGGCAAACAAGAGACGACTAG
GGAGAATCACTTTCCGTATATTCACTGACGGTAATTTGAATTTGTTCCCT
ATAAAAGATGTTCGGATCCGATACGAGGCTATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044823XLOC_044823Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072191-exon-scaffold_71-1575043694:787745..787785TCONS_00072191-exon-scaffold_71-1575043694:787745..787785Clytia hemisphaericaexon
TCONS_00072191-exon-scaffold_71-1575043694:787455..787544TCONS_00072191-exon-scaffold_71-1575043694:787455..787544Clytia hemisphaericaexon
TCONS_00072191-exon-scaffold_71-1575043694:786460..786510TCONS_00072191-exon-scaffold_71-1575043694:786460..786510Clytia hemisphaericaexon
TCONS_00072191-exon-scaffold_71-1575043694:785950..786082TCONS_00072191-exon-scaffold_71-1575043694:785950..786082Clytia hemisphaericaexon
TCONS_00072191-exon-scaffold_71-1575043694:785021..785130TCONS_00072191-exon-scaffold_71-1575043694:785021..785130Clytia hemisphaericaexon
TCONS_00072191-exon-scaffold_71-1575043694:784483..784545TCONS_00072191-exon-scaffold_71-1575043694:784483..784545Clytia hemisphaericaexon
TCONS_00072191-exon-scaffold_71-1575043694:781401..781595TCONS_00072191-exon-scaffold_71-1575043694:781401..781595Clytia hemisphaericaexon
TCONS_00072191-exon-scaffold_71-1575043694:780710..780812TCONS_00072191-exon-scaffold_71-1575043694:780710..780812Clytia hemisphaericaexon
TCONS_00072191-exon-scaffold_71-1510915933:787745..787785TCONS_00072191-exon-scaffold_71-1510915933:787745..787785Clytia hemisphaericaexon
TCONS_00072191-exon-scaffold_71-1510915933:787455..787544TCONS_00072191-exon-scaffold_71-1510915933:787455..787544Clytia hemisphaericaexon
TCONS_00072191-exon-scaffold_71-1510915933:786460..786510TCONS_00072191-exon-scaffold_71-1510915933:786460..786510Clytia hemisphaericaexon
TCONS_00072191-exon-scaffold_71-1510915933:785950..786082TCONS_00072191-exon-scaffold_71-1510915933:785950..786082Clytia hemisphaericaexon
TCONS_00072191-exon-scaffold_71-1510915933:785021..785130TCONS_00072191-exon-scaffold_71-1510915933:785021..785130Clytia hemisphaericaexon
TCONS_00072191-exon-scaffold_71-1510915933:784483..784545TCONS_00072191-exon-scaffold_71-1510915933:784483..784545Clytia hemisphaericaexon
TCONS_00072191-exon-scaffold_71-1510915933:781401..781595TCONS_00072191-exon-scaffold_71-1510915933:781401..781595Clytia hemisphaericaexon
TCONS_00072191-exon-scaffold_71-1510915933:780710..780812TCONS_00072191-exon-scaffold_71-1510915933:780710..780812Clytia hemisphaericaexon
TCONS_00072191-exon-scaffold_71-1491911889:787745..787785TCONS_00072191-exon-scaffold_71-1491911889:787745..787785Clytia hemisphaericaexon
TCONS_00072191-exon-scaffold_71-1491911889:787455..787544TCONS_00072191-exon-scaffold_71-1491911889:787455..787544Clytia hemisphaericaexon
TCONS_00072191-exon-scaffold_71-1491911889:786460..786510TCONS_00072191-exon-scaffold_71-1491911889:786460..786510Clytia hemisphaericaexon
TCONS_00072191-exon-scaffold_71-1491911889:785950..786082TCONS_00072191-exon-scaffold_71-1491911889:785950..786082Clytia hemisphaericaexon
TCONS_00072191-exon-scaffold_71-1491911889:785021..785130TCONS_00072191-exon-scaffold_71-1491911889:785021..785130Clytia hemisphaericaexon
TCONS_00072191-exon-scaffold_71-1491911889:784483..784545TCONS_00072191-exon-scaffold_71-1491911889:784483..784545Clytia hemisphaericaexon
TCONS_00072191-exon-scaffold_71-1491911889:781401..781595TCONS_00072191-exon-scaffold_71-1491911889:781401..781595Clytia hemisphaericaexon
TCONS_00072191-exon-scaffold_71-1491911889:780710..780812TCONS_00072191-exon-scaffold_71-1491911889:780710..780812Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072191-proteinTCONS_00072191-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_71supercontigscaffold_71:780710..787785 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.3946	6.23574	4.11997	3.33742	11.3598	9.76292	16.2054	17.4655	6.1326	14.1837	10.9638	7.90329	27.2755	25.1833	7.74824	13.3012	21.7403	30.1366	37.2561	26.3114	17.8346	15.4452	10.0814	11.4727	12.3449	13.4331	6.23896	6.11844	16.1588	9.25834
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000885Fib_collagen_C
Vocabulary: Molecular Function
TermDefinition
GO:0005201extracellular matrix structural constituent
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005201 extracellular matrix structural constituent
Blast
[Close]
BLAST of TCONS_00072191 vs. Swiss-Prot (Human)
Match: COBA1 (Collagen alpha-1(XI) chain OS=Homo sapiens GN=COL11A1 PE=1 SV=4)

HSP 1 Score: 85.5001 bits (210), Expect = 2.535e-18
Identity = 58/207 (28.02%), Postives = 105/207 (50.72%), Query Frame = 3 
Query:  204 LSYLREEVDDLQYPRGTRDNSALNCQELLDNRNDIQNGHYWIDPNRGCAWDAFETKCLFKGDAGYTCIKPQPKTVHLR-------KFG--ITRHQEMVLSKFVKVKA-SVRRPQLNFVRLLASDGYQDVTLRCFRPL--YNI------KNFSFVGHNKIEINGRDRTQVKIIANSCRRANKRRLGRITFRIFTDGNLNLFPIKDVRI 770
            L+ L+++++ +++P GT+ N A  C++L  +  D  +G YWIDPN+GC+ D+F+  C F    G TCI P  K+  +R       K G   +  +   L  ++ V+  S+   Q+ F++LL +   Q+ T  C +    Y++      K   F+G N  E++  +   +K + + C  A+++   +    I T   ++  PI DV I
Sbjct: 1583 LNSLKQDIEHMKFPMGTQTNPARTCKDLQLSHPDFPDGEYWIDPNQGCSGDSFKVYCNFT-SGGETCIYPDKKSEGVRISSWPKEKPGSWFSEFKRGKLLSYLDVEGNSINMVQMTFLKLLTASARQNFTYHCHQSAAWYDVSSGSYDKALRFLGSNDEEMSYDNNPFIKTLYDGC--ASRKGYEKTVIEINTP-KIDQVPIVDVMI 1785
The following BLAST results are available for this feature:
BLAST of TCONS_00072191 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
COBA12.535e-1828.02Collagen alpha-1(XI) chain OS=Homo sapiens GN=COL1... [more]
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