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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072211 ID=TCONS_00072211|Name=TCONS_00072211|organism=Clytia hemisphaerica|type=transcript|length=2588bpRun BLAST on NCBI protein sequence of TCONS_00072211-protein >TCONS_00072211-protein ID=TCONS_00072211-protein|Name=TCONS_00072211-protein|organism=Clytia hemisphaerica|type=polypeptide|length=833bp MLEGYITPLFMGYVDKYIKNLKPEDLSLSLWGGDVVLQNLELNLDVLQKERun BLAST on NCBI transcript from alignment at scaffold_71:1117185..1125670- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072211 ID=TCONS_00072211|Name=TCONS_00072211|organism=Clytia hemisphaerica|type=transcript|length=8486bp|location=Sequence derived from alignment at scaffold_71:1117185..1125670- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_71:1117185..1125670- >TCONS_00072211 ID=TCONS_00072211|Name=TCONS_00072211|organism=Clytia hemisphaerica|type=CDS|length=2499bp|location=Sequence derived from alignment at scaffold_71:1117185..1125670- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00072211 vs. Swiss-Prot (Human)
Match: VP13B (Vacuolar protein sorting-associated protein 13B OS=Homo sapiens GN=VPS13B PE=1 SV=2) HSP 1 Score: 278.485 bits (711), Expect = 2.283e-77 Identity = 184/509 (36.15%), Postives = 266/509 (52.26%), Query Frame = 2
Query: 89 MLEGYITPLFMGYVDKYIKNLKPEDLSLSLWGGDVVLQNLELNLDVLQKELNLPVTFLSGKIHKLQLHVPWTRLIYEPVVVTIKTMEFIIKLNDSGAQAEPEKTDVETENQTQ----------NKMDQTTTPSEDLPPGYVQSLLNKVVNNICFKVENVIIKYVEDDIVFSLNAKSVDYFCVDSDWKAAFIDLVQPELLLRRMCTITDLTICLDQRTTSGKIDLYQDPVLYKCSLTSRIVMRHRSVNSTKPIEQKFDVSCESLDFSLADLQIPMVLRLIKLVIGLFYGTL----------------DLPGCNFKKHSAPIAIEKQKNASNKSLVALTESKEISANDXXXXXXXXMLPVAS--DGPSE---------------QSFEENITSFGLFIKQVNLTLKRTSFL--PNMLSGQRIEFSPVMGFELNGCNLNFTSIGDSIVNVNLGLKMLTGFLFGKNCLCAMDGIKVAEISEDSNLEHELFLKIGVESSQD---YLKGSLFENK 1471
MLE Y+TP+ M YV++YIKNLKP DL LSLWGGDVVL LEL LDVL++EL LP TFLSG IH+L++HVPWT+L EPVV+TI TME I+KL D G Q + E + N++ +M Q DLPPGYVQSL+ +VVNN+ + N+I+KYVEDDIV S+N S + + V W AF+D+ +L+LR++ +D T+CLD+R SGKI+ YQDP+LYKCS +R+ + ++NS P K ESL S+ D Q+PM +R+++L I L+YG + D+ G N I+ Q A +K ++ E S + + S DG + Q+ ++ I S G + + +T K T + S Q+++ V+ +E G + +G+ + +G CL + G+K E + + + F G S YL SLF+ +
Sbjct: 1 MLESYVTPILMSYVNRYIKNLKPSDLQLSLWGGDVVLSKLELKLDVLEQELKLPFTFLSGHIHELRIHVPWTKLGSEPVVITINTMECILKLKD-GIQDDHESCGSNSTNRSTAESTKSSIKPRRMQQAAPTDPDLPPGYVQSLIRRVVNNVNIVINNLILKYVEDDIVLSVNITSAECYTVGELWDRAFMDISATDLVLRKVINFSDCTVCLDKRNASGKIEFYQDPLLYKCSFRTRLHFTYENLNSKMPSVIKIHTLVESLKLSITDQQLPMFIRIMQLGIALYYGEIGNFKEGEIEDLTCHNKDMLG-NITGSEDETRIDMQYPAQHKGQELYSQQDEEQPQGWVSWAWSFVPAIVSYDDGEEDFVGNDPASTMHQQKAQTLKDPIVSIGFYCTKATVTFKLTEMQVESSYYSPQKVKSKEVLCWEQEGTTVEALMMGEPFFDCQIGFVGCRAM-----CLKGIMGVKDFEENMNRSETEACFFICGDNLSTKGFTYLTNSLFDYR 502 The following BLAST results are available for this feature:
BLAST of TCONS_00072211 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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